Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vaccinium_20macrocarpon_20[genbank_20GCA_5F000775335.1_202014-09-04] 200,203 sequences; 414,621,889 total letters Query= AAMG01002180.1 Length=500 Score E Sequences producing significant alignments: (Bits) Value seq177630 122 3e-25 seq184018 93.3 1e-16 seq145216 91.5 4e-16 seq189747 86.0 2e-14 seq132674 78.8 3e-12 seq113069 78.8 3e-12 seq150839 77.0 1e-11 >seq177630 Length=5178 Score = 122 bits (134), Expect = 3e-25 Identities = 161/222 (73%), Gaps = 11/222 (5%) Strand=Plus/Minus Query 222 GAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCA 281 |||||| ||||| |||||| |||||||| | | ||| ||||||| ||||||||||| Sbjct 4782 GAGAGGATGATC-----CATTGGGACTGAGACGCTGCCCAGACTCCTATGGGAGGCAGCA 4728 Query 282 GTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGAAG 341 | ||||||| | | ||| |||||||||||||||| ||||| ||| |||| | ||| Sbjct 4727 GGGGGGAATTTCCCGCAAAGGGCAAAAGCCTGATGGAGCAATGCCACGTGGAAGTAGAAA 4668 Query 342 GCCTTCGGGTCGTAAAGCTCTGTCCTCAAGGAAGA--TAATGACGGTACTTGAGGAGGAA 399 ||| ||| | || ||| | | || ||||| |||||||||| | ||| || Sbjct 4667 GCC----AGTCATGAACTTCTTTTCACAGAGAAGAAGCAATGACGGTATCTAGGGAATAA 4612 Query 400 GCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGG 441 | ||||||||| ||||||||| ||| ||| ||| ||| Sbjct 4611 GTATCGGCTAACTCTATGCCAGCAGACGCAATAAGACGGAGG 4570 >seq184018 Length=6353 Score = 93.3 bits (102), Expect = 1e-16 Identities = 97/125 (78%), Gaps = 2/125 (2%) Strand=Plus/Plus Query 238 ACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCAGTGGGGAATATTGCAC 297 ||| ||| |||||||||||| | ||||| ||||| ||||||||| |||| ||| || Sbjct 1 ACACTGGGACTGAGACACGGCCTGGACTCCCACGGGGAGCAGCAGTGATGAATCTTGGAC 60 Query 298 AATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGAA-GGC-CTTCGGGTCGTA 355 ||||||| |||||||||| |||||| ||||||| || ||| ||| | | | | ||| Sbjct 61 AATGGGCGAAAGCCTGATCCAGCAATATCGCGTGACTGAAGAATGGCGATGCTGCTTGTA 120 Query 356 AAGCT 360 ||||| Sbjct 121 AAGCT 125 >seq145216 Length=2450 Score = 91.5 bits (100), Expect = 4e-16 Identities = 79/97 (81%), Gaps = 1/97 (1%) Strand=Plus/Plus Query 226 GGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCAGTGG 285 || ||||| || || ||||||||||||||| ||||||||| | ||| ||||||||||| Sbjct 2313 GGTTGATCAGCTACTCTGGAACTGAGACACGACCCAAACTCCCATGGGGGGCAGCAGTGG 2372 Query 286 GGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAA 322 ||||| ||| ||||| || ||||||| || || ||| Sbjct 2373 GGAATCTTGGACAAT-GGAAAAAGCCCAATCCATCAA 2408 >seq189747 Length=8024 Score = 86.0 bits (94), Expect = 2e-14 Identities = 107/145 (74%), Gaps = 5/145 (3%) Strand=Plus/Plus Query 168 ATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACCTGAGAGG 227 ||||| |||||||| |||||| |||| ||||| | ||| |||| | || || Sbjct 3348 ATTAGTTAGTTGGTCAGGTAAAGGCTGGCCAAGACTGTGATGCTTAGCTGGTCTTTTCGG 3407 Query 228 GTGATCGGCCACA-TTGGAACTGAGACACGGTCCAAACTCCTACGG----GAGGCAGCAG 282 ||||| |||||| |||| |||||| ||| | || ||||| || | | |||||||| Sbjct 3408 ATGATCAGCCACACTTGGGACTGAGTCACAGCCCGGACTCCAACAGACGCGGGGCAGCAG 3467 Query 283 TGGGGAATATTGCACAATGGGCAAA 307 ||| |||| ||| |||||||||||| Sbjct 3468 TGGAGAATCTTGGACAATGGGCAAA 3492 >seq132674 Length=1927 Score = 78.8 bits (86), Expect = 3e-12 Identities = 104/142 (73%), Gaps = 3/142 (2%) Strand=Plus/Plus Query 193 TTACCAAGGCGACGATCAGTAGC--CGAC-CTGAGAGGGTGATCGGCCACATTGGAACTG 249 ||||||| |||| ||| |||| | | | ||| || |||| | || |||||||| Sbjct 711 TTACCAAAGCGATGATTAGTATCATCTAGACTGGAAGAATGATAAACAGCACTGGAACTG 770 Query 250 AGACACGGTCCAAACTCCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGCAAAAG 309 ||||||| ||| |||| ||| ||||| | ||||||||| || | ||| ||| |||| Sbjct 771 AGACACGACCCAGACTCTTACAATAGGCAACGGTGGGGAATTTTTCGCAAATGGCGAAAG 830 Query 310 CCTGATGCAGCAACGCCGCGTG 331 | ||||| ||||| || ||||| Sbjct 831 CGTGATGGAGCAATGCTGCGTG 852 >seq113069 Length=1329 Score = 78.8 bits (86), Expect = 3e-12 Identities = 58/68 (85%), Gaps = 0/68 (0%) Strand=Plus/Minus Query 275 GGCAGCAGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGC 334 |||||||||||||||| ||| ||||||||| |||| ||||| |||||| |||||||| Sbjct 578 GGCAGCAGTGGGGAATTTTGGACAATGGGCGAAAGGCTGATCCAGCAATATCGCGTGAGT 519 Query 335 GATGAAGG 342 || ||||| Sbjct 518 GAAGAAGG 511 >seq150839 Length=2746 Score = 77.0 bits (84), Expect = 1e-11 Identities = 120/170 (71%), Gaps = 10/170 (6%) Strand=Plus/Plus Query 163 GTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACCTG 222 |||| ||||||||||| || ||| || |||||| ||||| | |||| || | Sbjct 279 GTCTCATTAGCTAGTTTGTGAGGCAATAGCTTACTAAGGCTATGATC-GT-------TCG 330 Query 223 AGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCAG 282 ||||| |||| |||| | ||| || || |||| | | | | |||| |||| || || Sbjct 331 AGAGGATGATTAGCCATACTGGGACCAAGGCACGACCTAGAATGCTACATGAGGTAGTAG 390 Query 283 TGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGA 332 ||||| || || | |||||| ||| ||||||| ||| | || |||||| Sbjct 391 TGGGGGATTTTCCTCAATGGACAATAGCCTGA--CAGAGAAGCTGCGTGA 438 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1494601759872