Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vaccinium_20macrocarpon_20[genbank_20GCA_5F000775335.1_202014-09-04] 200,203 sequences; 414,621,889 total letters Query= AAMG01002183.1 Length=408 Score E Sequences producing significant alignments: (Bits) Value seq197859 95.1 3e-17 seq198174 89.7 1e-15 seq199483 80.6 6e-13 seq199322 75.2 3e-11 >seq197859 Length=1131 Score = 95.1 bits (104), Expect = 3e-17 Identities = 111/149 (74%), Gaps = 7/149 (5%) Strand=Plus/Plus Query 264 ACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATTAGATACCCTGGTAGTCCAC 323 ||||||||| || ||||||| ||||||| | | |||||||| |||| ||||||| Sbjct 936 ACTGACACTAAGAGACGAAAGCTAGGGGAGCGAGCGGGATTAGAGACCCCAGTAGTCCTA 995 Query 324 GCCGTAAACGATGAATACTAGGTGTCGGGGCGCATAAGTGCTCCG----GTGCCGCAGCA 379 ||||||||||||| |||||||| || | || ||| ||| |||| | ||| Sbjct 996 GCCGTAAACGATGGATACTAGG---CGCTGTGCGTAATCCACCCGTGCAGTGCTGTAGCT 1052 Query 380 AACGCAATAAGTATTCCACCTGGGGAGTA 408 ||||| ||||||| || ||||||||||| Sbjct 1053 AACGCGTTAAGTATCCCGCCTGGGGAGTA 1081 >seq198174 Length=3166 Score = 89.7 bits (98), Expect = 1e-15 Identities = 134/189 (71%), Gaps = 1/189 (1%) Strand=Plus/Minus Query 59 GCTAGCGTTATCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAG 118 || ||||||||||||||| | ||||||||||| || |||||||| || ||||||| Sbjct 3156 GCAAGCGTTATCCGGAATGATTGGGCGTAAAGCGTCTGTAGGTGGCTTTTTAAGTCCACT 3097 Query 119 GTGAAAGGCTATGGCTCAACCCCGGGACTGCTTTTGAAACTGCAGGGCTAGAGTGCAGGA 178 || ||| | | || |||||| || | | |||||| | | | |||| || | Sbjct 3096 GTCAAATCCCAGGGATCAACCTTGGACAGGGGATGGAAACTACCAAGTTGGAGTACAATA 3037 Query 179 GGGGCAAGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGT 238 |||||| |||||| | |||| ||| ||||||||||| |||| | | ||| |||| Sbjct 3036 GGGGCACAGGGAATTTCCAGTGGAGCAATGAAATGCGTAAATATCATAAAGAA-ACCAAC 2978 Query 239 GGCGAAGGC 247 || ||| || Sbjct 2977 GGTGAAAGC 2969 >seq199483 Length=3922 Score = 80.6 bits (88), Expect = 6e-13 Identities = 88/116 (76%), Gaps = 1/116 (1%) Strand=Plus/Plus Query 223 TAGGAGGAACACCAGTGGCGAAGGCGGCTTGCTGGACTGTAACTGACACTGAGGCTCGAA 282 || ||||||| ||| |||||||| ||| |||| | | ||| || || || || Sbjct 32 TACGAGGAACGCCAAAAGCGAAGGCAGCTCTCTGGGGTCCTATCGACGCTAGGGGTCCAA 91 Query 283 A-GCGTGGGGAGCAAACAGGATTAGATACCCTGGTAGTCCACGCCGTAAACGATGA 337 | || ||| |||||||| |||||||||||||| ||||| || |||||||| ||||| Sbjct 92 AAGCATGGAGAGCAAACGGGATTAGATACCCTAGTAGTACATGCCGTAAATGATGA 147 >seq199322 Length=2879 Score = 75.2 bits (82), Expect = 3e-11 Identities = 52/59 (88%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 279 CGAAAGCGTGGGGAGCAAACAGGATTAGATACCCTGGTAGTCCACGCCGTAAACGATGA 337 ||||||| |||||||||||| |||||||||||||| |||||||| | |||||| |||| Sbjct 790 CGAAAGCATGGGGAGCAAACGGGATTAGATACCCTAGTAGTCCATGTAGTAAACAATGA 732 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1200791157504