Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vaccinium_20macrocarpon_20[genbank_20GCA_5F000775335.1_202014-09-04] 200,203 sequences; 414,621,889 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq199139 197 3e-48 seq177271 161 2e-37 seq111387 161 2e-37 seq149216 158 2e-36 seq200031 147 4e-33 seq184452 143 5e-32 seq191775 140 6e-31 seq175741 140 6e-31 seq186642 118 2e-24 seq169758 118 2e-24 seq89404 118 2e-24 seq185858 116 7e-24 seq86128 104 4e-20 seq97523 87.8 3e-15 seq196062 84.2 4e-14 seq126514 84.2 4e-14 seq171844 78.8 2e-12 seq120437 77.0 6e-12 >seq199139 Length=1910 Score = 197 bits (218), Expect = 3e-48 Identities = 166/199 (83%), Gaps = 5/199 (3%) Strand=Plus/Minus Query 71 GCTTCTTAGAGGGACTATCGGCT--CAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTG 128 |||||||| ||||||||| | || || ||| |||||||||||||||||||||| || || Sbjct 196 GCTTCTTAAAGGGACTATGGTCTTTCAGGCC-ATGGAAGTTTGAGGCAATAACATGTTTG 138 Query 129 TGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCAT 188 ||||||| |||||||||||||||||||||||||||| ||||| | ||||||||| || Sbjct 137 TGATGCCGTTAGATGTTCTGGGCCGCACGCGCGCTA-ACTGATGTATTCAACGAGTTTAT 79 Query 189 CACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCAT 248 ||||||| | |||||| |||||||||| | ||| | ||||| |||||||||| ||| Sbjct 78 AGCCTTGGCTGAAAGGTCCGGGTAATCTT-TGAAATTTCATCGTGATGGGGATAGATCAT 20 Query 249 TGCAATTATTGCTCTTCAA 267 ||||||| ||| |||| || Sbjct 19 TGCAATTGTTGGTCTTAAA 1 >seq177271 Length=5127 Score = 161 bits (178), Expect = 2e-37 Identities = 123/144 (85%), Gaps = 1/144 (1%) Strand=Plus/Plus Query 177 CAACGAGTTCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTG 236 ||||||||| || ||||||| | |||||| |||||||||| | ||| | ||||| || Sbjct 4985 CAACGAGTTTATAGCCTTGGCTGAAAGGTCCGGGTAATCTT-TGAAATTTCATCGTGATG 5043 Query 237 GGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATC 296 |||||||| |||||||||| ||| |||| |||||||||| ||||||||||||| |||||| Sbjct 5044 GGGATAGATCATTGCAATTGTTGGTCTTAAACGAGGAATTCCTAGTAAGCGCGAGTCATC 5103 Query 297 AGCACGCGTTGATTACGTCCCTGC 320 ||| |||||||| ||||||||||| Sbjct 5104 AGCTCGCGTTGACTACGTCCCTGC 5127 >seq111387 Length=1287 Score = 161 bits (178), Expect = 2e-37 Identities = 118/136 (87%), Gaps = 1/136 (1%) Strand=Plus/Minus Query 193 TTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCA 252 ||||| | |||||| |||||||||| | ||| | ||||| |||||||||| ||||||| Sbjct 1287 TTGGCTGAAAGGTCCGGGTAATCTT-TGAAATTTCATCGTGATGGGGATAGATCATTGCA 1229 Query 253 ATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTAC 312 ||| ||| |||| |||||||||| ||||||||||||| ||||||||| |||||||| ||| Sbjct 1228 ATTGTTGGTCTTAAACGAGGAATTCCTAGTAAGCGCGAGTCATCAGCTCGCGTTGACTAC 1169 Query 313 GTCCCTGCCCTTTGTA 328 |||||||||||||||| Sbjct 1168 GTCCCTGCCCTTTGTA 1153 >seq149216 Length=2654 Score = 158 bits (174), Expect = 2e-36 Identities = 115/131 (88%), Gaps = 3/131 (2%) Strand=Plus/Minus Query 71 GCTTCTTAGAGGGACTATCGGCT--CAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTG 128 |||||||||||||||||| | || || ||| | |||||||||||||||||||||||||| Sbjct 2630 GCTTCTTAGAGGGACTATGGCCTTTCAGGCC-ACGGAAGTTTGAGGCAATAACAGGTCTG 2572 Query 129 TGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCAT 188 |||||||||||||||||||||||||||||||||||||||||| | ||||||||| || Sbjct 2571 TGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGATGTATTCAACGAGTTTAT 2512 Query 189 CACCTTGGCCG 199 |||| |||| Sbjct 2511 AGCCTTAGCCG 2501 >seq200031 Length=10744 Score = 147 bits (162), Expect = 4e-33 Identities = 148/190 (78%), Gaps = 2/190 (1%) Strand=Plus/Plus Query 71 GCTTCTTAGAGGGACTATCGGCTCA-AGCCGATGGAAGTTTGAGGCAATAACAGGTCTGT 129 ||| |||||||||| ||| | || || | | |||| |||| |||||||| |||| ||| Sbjct 6647 GCTCCTTAGAGGGAATATGGCCTTTTAGTCCACGGAAATTTGGGGCAATAATAGGTTTGT 6706 Query 130 GATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATC 189 |||||||||||||||||||| |||||||||||||||||||| | |||| | || Sbjct 6707 GATGCCCTTAGATGTTCTGGACCGCACGCGCGCTACACTGATGCATTCAACAATGCGATA 6766 Query 190 ACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATT 249 ||||||| | ||||| ||||||||||| | ||| | | ||| ||||||| || |||| Sbjct 6767 GCCTTGGCTGAAAGGTATGGGTAATCTT-TGAAATTTCATTGTGATGGGGATCGATCATT 6825 Query 250 GCAATTATTG 259 ||| || ||| Sbjct 6826 GCATTTGTTG 6835 >seq184452 Length=6451 Score = 143 bits (158), Expect = 5e-32 Identities = 143/184 (78%), Gaps = 1/184 (1%) Strand=Plus/Plus Query 145 TCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACCTTGGCCGGAAGG 204 |||| | ||| |||||||||||||| | ||| ||||| || ||||||| | |||| Sbjct 6097 TCTGTGATGCATGCGCGCTACACTGATGAATTCAATGAGTTTATAGCCTTGGCTGAAAGG 6156 Query 205 TCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTT 264 || ||||||| || | ||| | || || ||||||| || |||||||||| ||| |||| Sbjct 6157 TCCGGGTAATGTT-TGAAATTTCATCATGATGGGGATGGATCATTGCAATTGTTGGTCTT 6215 Query 265 CAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTT 324 |||| |||||| |||||||||||| | ||||||| | |||| ||||| |||||||| Sbjct 6216 CAACAAGGAATTTCTAGTAAGCGCGAGCCATCAGCTTGTGTTGGCGACGTCACTGCCCTT 6275 Query 325 TGTA 328 |||| Sbjct 6276 TGTA 6279 >seq191775 Length=8922 Score = 140 bits (154), Expect = 6e-31 Identities = 91/100 (91%), Gaps = 0/100 (0%) Strand=Plus/Minus Query 229 TCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGC 288 ||||| |||||||||| |||||||||| ||| |||| |||||||||| |||||||||||| Sbjct 8908 TCGTGATGGGGATAGATCATTGCAATTGTTGGTCTTAAACGAGGAATTCCTAGTAAGCGC 8849 Query 289 GTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 | ||||||||| |||||||| ||||||||||||||||||| Sbjct 8848 GAGTCATCAGCTCGCGTTGACTACGTCCCTGCCCTTTGTA 8809 >seq175741 Length=4904 Score = 140 bits (154), Expect = 6e-31 Identities = 91/100 (91%), Gaps = 0/100 (0%) Strand=Plus/Plus Query 229 TCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGC 288 ||||| |||||||||| |||||||||| ||| |||| |||||||||| |||||||||||| Sbjct 1 TCGTGATGGGGATAGATCATTGCAATTGTTGGTCTTAAACGAGGAATTCCTAGTAAGCGC 60 Query 289 GTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 | ||||||||| |||||||| ||||||||||||||||||| Sbjct 61 GAGTCATCAGCTCGCGTTGACTACGTCCCTGCCCTTTGTA 100 >seq186642 Length=7014 Score = 118 bits (130), Expect = 2e-24 Identities = 76/83 (92%), Gaps = 0/83 (0%) Strand=Plus/Minus Query 246 CATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGT 305 |||||||||| ||| |||| |||||||||| ||||||||||||| ||||||||| ||||| Sbjct 7014 CATTGCAATTGTTGGTCTTAAACGAGGAATTCCTAGTAAGCGCGAGTCATCAGCTCGCGT 6955 Query 306 TGATTACGTCCCTGCCCTTTGTA 328 ||| ||||||||||||||||||| Sbjct 6954 TGACTACGTCCCTGCCCTTTGTA 6932 >seq169758 Length=4193 Score = 118 bits (130), Expect = 2e-24 Identities = 67/68 (99%), Gaps = 0/68 (0%) Strand=Plus/Minus Query 103 GGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGC 162 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 119 GGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATATTCTGGGCCGCACGCGCGC 60 Query 163 TACACTGA 170 |||||||| Sbjct 59 TACACTGA 52 >seq89404 Length=849 Score = 118 bits (130), Expect = 2e-24 Identities = 96/114 (84%), Gaps = 3/114 (3%) Strand=Plus/Minus Query 83 GACTATCGGCT--CAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAG 140 |||||| | || || ||| | | |||||||||||||||||||||||||||||||||||| Sbjct 113 GACTATGGCCTTTCAGGCC-ACGAAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAG 55 Query 141 ATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACCTT 194 ||||||| |||| ||||||||||||||||| | ||||||||| || |||| Sbjct 54 ATGTTCTAGGCCACACGCGCGCTACACTGATGTATTCAACGAGTTTATAGCCTT 1 >seq185858 Length=6796 Score = 116 bits (128), Expect = 7e-24 Identities = 137/182 (75%), Gaps = 5/182 (3%) Strand=Plus/Plus Query 20 GAGCGAGACCTTAACCTGCTAAATAGCCAGGCCCGCTT--TGGCGGGTCGCCGGCTTCTT 77 || ||||| |||| ||||| || |||||| || | || || || ||||||| Sbjct 1008 GAACGAGATCTTAGCCTGCCAACTAGCCATGCAGAGGTAATGCTTGGCAGCTAGCTTCTT 1067 Query 78 AGAGGGACTATCGGCT--CAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCC 135 ||||| || || | || || ||| ||| ||||||||||||||||||||| ||| ||||| Sbjct 1068 AGAGGAACCATGGCCTTTCAGGCC-ATGAAAGTTTGAGGCAATAACAGGTTTGTAATGCC 1126 Query 136 CTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACCTTG 195 |||||||||||||||| ||| ||| |||||||| | ||||||||| || |||| Sbjct 1127 CTTAGATGTTCTGGGCTGCATGCGAAATACACTGATGTATTCAACGAGTTTATAGTCTTG 1186 Query 196 GC 197 || Sbjct 1187 GC 1188 >seq86128 Length=798 Score = 104 bits (114), Expect = 4e-20 Identities = 84/102 (82%), Gaps = 0/102 (0%) Strand=Plus/Plus Query 105 AAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTA 164 |||||||||||||||||| ||||||||||||||||||||||||||| | | | | | ||| Sbjct 129 AAGTTTGAGGCAATAACAAGTCTGTGATGCCCTTAGATGTTCTGGGTCACTCACTCACTA 188 Query 165 CACTGACAGAGCCAACGAGTTCATCACCTTGGCCGGAAGGTC 206 |||||| | |||| |||| || ||||||| | |||||| Sbjct 189 CACTGATGTATTCAACTAGTTTATGGCCTTGGCTGAAAGGTC 230 >seq97523 Length=990 Score = 87.8 bits (96), Expect = 3e-15 Identities = 80/101 (79%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 117 ATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGC 176 |||| |||| |||||| ||| |||||||| |||||||||||| |||||||| | | Sbjct 873 ATAATAGGTTTGTGATTCCCATAGATGTTTGGGGCCGCACGCGTGCTACACTTATGTATT 932 Query 177 CAACGAGTTCATCACCTTGGCCGGAAGGTCTGGGTAATCTT 217 |||||| || || ||||||| | ||||| |||||||||| Sbjct 933 CAACGAATTTATAGCCTTGGCTGAAAGGTTCGGGTAATCTT 973 >seq196062 Length=13094 Score = 84.2 bits (92), Expect = 4e-14 Identities = 104/139 (75%), Gaps = 4/139 (3%) Strand=Plus/Plus Query 191 CCTTGGCCGGA-AGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATT 249 ||||| |||| ||| || ||||| ||| | ||| || || | |||||||||| | || Sbjct 10508 CCTTG--CGGACAGGCCTAGGTAACCTT-TGAAATTCCATCACGATGGGGATAGATCTTT 10564 Query 250 GCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGAT 309 || ||| || ||||||| || ||| ||| | || | | ||| || || || ||||| Sbjct 10565 GCTATTGCTGGTCTTCAATAAGAAATTCCTTATGAGTGTGAGTCGTCTGCTCGAGTTGAA 10624 Query 310 TACGTCCCTGCCCTTTGTA 328 ||||||||||||||||||| Sbjct 10625 TACGTCCCTGCCCTTTGTA 10643 >seq126514 Length=1715 Score = 84.2 bits (92), Expect = 4e-14 Identities = 72/86 (84%), Gaps = 5/86 (6%) Strand=Plus/Minus Query 71 GCTTCTTAGAGGGACTATCGGCT--CAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTG 128 |||||||| ||||||||| | || || | || ||||||||||||||||| ||||||| Sbjct 1661 GCTTCTTATAGGGACTATGGCCTTTCAGG--GAAGGAAGTTTGAGGCAATAT-AGGTCTG 1605 Query 129 TGATGCCCTTAGATGTTCTGGGCCGC 154 | || |||||||||||||| |||||| Sbjct 1604 TTATACCCTTAGATGTTCTAGGCCGC 1579 >seq171844 Length=4421 Score = 78.8 bits (86), Expect = 2e-12 Identities = 63/76 (83%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 253 ATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTAC 312 ||| ||| |||| || ||||||| | || ||||| || ||||||||| |||||| | ||| Sbjct 574 ATTGTTGGTCTTAAATGAGGAATTCTTAATAAGCACGAGTCATCAGCTCGCGTTAACTAC 515 Query 313 GTCCCTGCCCTTTGTA 328 ||||||||||||| || Sbjct 514 GTCCCTGCCCTTTATA 499 >seq120437 Length=1527 Score = 77.0 bits (84), Expect = 6e-12 Identities = 60/71 (85%), Gaps = 2/71 (3%) Strand=Plus/Plus Query 127 TGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTC 186 ||||||||||||||||||| ||||||| ||||||||||||||| | ||||||||| Sbjct 1455 TGTGATGCCCTTAGATGTTATGGGCCG--CGCGCGCTACACTGATGTATTCAACGAGTTT 1512 Query 187 ATCACCTTGGC 197 || ||||||| Sbjct 1513 ATAGCCTTGGC 1523 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 945303677184