Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vaccinium_20macrocarpon_20[genbank_20GCA_5F000775335.1_202014-09-04] 200,203 sequences; 414,621,889 total letters Query= AAMG01002193.1 Length=560 Score E Sequences producing significant alignments: (Bits) Value seq199398 179 1e-42 seq198921 127 7e-27 seq198050 105 2e-20 seq199318 104 8e-20 seq198938 86.0 2e-14 seq199064 82.4 3e-13 >seq199398 Length=3331 Score = 179 bits (198), Expect = 1e-42 Identities = 322/461 (70%), Gaps = 26/461 (6%) Strand=Plus/Minus Query 35 GACCCGAAACCAAGTGATCTACCCATGGCCAGGATGAAG-GTGCGGTAACACGCCCTGGA 93 ||||||||||| | |||||| ||||| |||| ||||| | || ||||| ||| |||| Sbjct 2502 GACCCGAAACCGATCGATCTAGCCATGAGCAGGTTGAAGAGAGCTCTAACAGGCCTTGGA 2443 Query 94 GGTCCGAACCCACTAATGTTGAAAAATTAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCT 153 || |||||||||| |||| | ||||| |||||||| ||||| |||||||||||||| Sbjct 2442 GGACCGAACCCACGTATGTGGCAAAATACGGGGATGACTTGTGGCTAGGGGTGAAAGGCC 2383 Query 154 AAACAAACTTGGAAATAGCTGGTTCTCTCCGAAAACTATTTAGGTAGTGCCTCAAGTATC 213 || ||| | ||| |||||||||| || ||||| |||||| |||| || | | || Sbjct 2382 AACCAAGATCGGATATAGCTGGTTTTCCGCGAAATCTATTTCAGTAGAGCGT--ATGATG 2325 Query 214 ACCAT---CGGGGGTAGAGCACTGTTATGGCTAGGGGG---TCATTGCGACTTACCAAAC 267 | || | | ||||||||||| |||||||| | |||| | |||||||| | Sbjct 2324 TCGATGGCCCGAGGTAGAGCACTCAATGGGCTAGGGTGGCCCCATTTAGCCTTACCAACC 2265 Query 268 CATTGCAAACTCCGAATGC--GC----ATCAGTTTTACCGCGGGAGTGAGGGCATGGGTG 321 | | ||||||||||| | || ||| || ||| || || |||||| Sbjct 2264 CCAGGGAAACTCCGAATACAGGCCTAGATCGTTTGTAC----AGACAGACTTTTTGGGTG 2209 Query 322 CTAAGGTCCGTGCCCGAGAGGAGAAGAATCCGGACTATCAGCTAAGGCCCCGAAATGACA 381 ||||| ||| ||||||| || | || || | ||||||| ||| || | Sbjct 2208 CTAAGATCCAAAGTCGAGAGGGAAACAGCCCAGATCGTACGCTAAGGTCCCTAAGCAATC 2149 Query 382 GCTAAGTTAAACTAACGAAGTCTGAT--TGCTAAGACAGCTAGGATGTTGGCTTGGAAGC 439 || ||| || || |||| |||| || | |||| | |||| || ||||||||||| Sbjct 2148 ACTTAGTGGAA--AAGGAAG--TGATCGAGCGATGACAACCAGGAGGTGGGCTTGGAAGC 2093 Query 440 AGCCATTCATTTAAAGAGTGCGTAACAGCTCACTAGTCGAG 480 ||||| || ||| |||| |||||| |||||||| ||| || Sbjct 2092 AGCCA-TCCTTTGAAGAAAGCGTAATAGCTCACTGGTCTAG 2053 >seq198921 Length=780 Score = 127 bits (140), Expect = 7e-27 Identities = 173/235 (74%), Gaps = 10/235 (4%) Strand=Plus/Plus Query 41 AAACCAAGTGATCTACCCATGGCCAGGATGAAG-GTGCGGTAACACGCCCTGGAGGTCCG 99 ||||| | |||||| ||||| |||| ||||| | || ||||| ||| | |||| ||| Sbjct 547 AAACCGATCGATCTAGCCATGAGCAGGTTGAAGAGAGCTCTAACAAGCCTTCGAGGACCG 606 Query 100 AACCCACTAATGTTGAAAAATTAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCTAAACAA 159 ||||||| |||| | ||||| |||||||| ||||| |||||||||||||| || ||| Sbjct 607 AACCCACGTATGTGGCAAAATACGGGGATGACTTGTGGCTAGGGGTGAAAGGCCAACCAA 666 Query 160 ACTTGGAAATAGCTGGTTCTCTCCGAAAACTATTTAGGTAGTGCCTCAAGTATCACCAT- 218 | ||| |||||| ||| || |||||| |||||| |||| || | | || | || Sbjct 667 GATCGGATATAGCTAGTTTTCCCCGAAATCTATTTCAGTAGAGCAT--ATGATGTCGATG 724 Query 219 --CGGGGGTAGAGCACTGTTATGG-CTAGG--GGGTCATTGCGACTTACCAAACC 268 | | ||||||||||| |||| ||||| || |||| | |||||||| || Sbjct 725 GCCCGAGGTAGAGCACT-CAATGGACTAGGGTGGCCCATTTAGCCTTACCAACCC 778 >seq198050 Length=2310 Score = 105 bits (116), Expect = 2e-20 Identities = 135/186 (73%), Gaps = 5/186 (3%) Strand=Plus/Plus Query 2 CGAGTCCGAACAGGGCGACAGTCGCTGGGTGTAGACCCGAAACCAAGTGATCTACCCATG 61 |||||| | ||||| | ||| ||| | | |||||||| | |||||||| ||||| Sbjct 1782 CGAGTCTTCATAGGGCAATTGTCACTGCTTATGGACCCGAACCTGGGTGATCTATCCATG 1841 Query 62 GCCAGGATGAAGGTGCGGTAACACGCCCTGGAGGTCCGAACCCACTAATGTTGAAAAATT 121 ||||||||||| | ||| | || |||||||||||||| ||| || || | Sbjct 1842 ACCAGGATGAAGCTTGGGTGAAACTAAGTGGAGGTCCGAACCGACTGATCTT-----CTC 1896 Query 122 AGGGGATGAGCTGTGGGTAGGGGTGAAAGGCTAAACAAACTTGGAAATAGCTGGTTCTCT 181 || ||||||| ||||| ||||||||||| || | | ||| || |||||||||||| Sbjct 1897 AGCGGATGAGTTGTGGTTAGGGGTGAAATGCCACTCGAACCCAGAGCTAGCTGGTTCTCC 1956 Query 182 CCGAAA 187 |||||| Sbjct 1957 CCGAAA 1962 >seq199318 Length=2869 Score = 104 bits (114), Expect = 8e-20 Identities = 120/160 (75%), Gaps = 4/160 (3%) Strand=Plus/Minus Query 35 GACCCGAAACCAAGTGATCTACCCATGGCCAGGATGAAG-GTGCGGTAACACGCCCTGGA 93 ||||| ||||| | |||||| ||||| |||| ||||| | || ||||| ||| |||| Sbjct 812 GACCCAAAACCGATCGATCTAGCCATGAGCAGGTTGAAGAGAGCTCTAACAGGCCTTGGA 753 Query 94 GGTCCGAACCCACTAATGTTGAAAAATTAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCT 153 || || ||||||| |||| || | ||||||| ||||| ||||||||||| || Sbjct 752 GGACCAAACCCACGTATGTGCAATACA---GGGATGAATTGTGGCTAGGGGTGAAATGCC 696 Query 154 AAACAAACTTGGAAATAGCTGGTTCTCTCCGAAAACTATT 193 || ||| | ||| |||||||||| || ||||| ||||| Sbjct 695 AACCAAGATCGGATATAGCTGGTTTTCCGCGAAATCTATT 656 >seq198938 Length=863 Score = 86.0 bits (94), Expect = 2e-14 Identities = 176/257 (68%), Gaps = 15/257 (6%) Strand=Plus/Minus Query 35 GACCC-GAAACCAAGTGATCTACCCATGGCCAGGATGAAG-GTGCGGTAACACGCCCTGG 92 ||||| |||||||| ||||||| ||||| |||| | ||| | | ||||||||| ||| Sbjct 554 GACCCAGAAACCAATTGATCTAGCCATGAGCAGGTTAAAGAGAGATCTAACACGCCTTGG 495 Query 93 AGGTCCGAACCCACTAATGTTGAAAAATTAGGGGATGAGCTGTGGGTAGGGGTGAAAGGC 152 ||| || || |||| | ||||| ||||||| ||| ||||| |||||||| Sbjct 494 AGGACCAAAT------ATGTGGCAAAATACAGGGATGACTCATGGCTAGGGTTGAAAGGC 441 Query 153 TAAACAAACTTGGAAATAGCTGGTTCTCTCCGAAAACTATTTAGGTAGTGCCTCAAGTAT 212 || ||| | || |||||||||| || |||| |||||| ||| || | | | Sbjct 440 CAACCAAGATCAGATATAGCTGGTTTTCCGGGAAATCTATTTTCATAGAGCGTATGATGT 381 Query 213 CACCATCG---GGGGTAGAGCACTGTTATGGCTAGGGGGTCA--TTGCGACTTACCAAAC 267 || || | | ||||||||||| |||||| | | | || | |||||||| | Sbjct 380 CA--ATGGCCCGAGGTAGAGCACTCAATGGGCTAGAGTGGCCCCTTTAGCCTTACCAACC 323 Query 268 CATTGCAAACTCCGAAT 284 | | ||||||||||| Sbjct 322 CCAGGAAAACTCCGAAT 306 >seq199064 Length=1494 Score = 82.4 bits (90), Expect = 3e-13 Identities = 127/178 (71%), Gaps = 15/178 (8%) Strand=Plus/Minus Query 35 GACCCG-AAACCAAGTGATCTACCCATG-GC------CAGGATGAAG-GTGCGGTAACAC 85 |||||| ||||||| |||||| ||||| || |||| ||||| | || |||||| Sbjct 1033 GACCCGGAAACCAATCGATCTAGCCATGAGCATTGAGCAGGTTGAAGAGAGCTCTAACAC 974 Query 86 GCCCTGGAGGTCCGAACCCACTAATGTTGAAAAATTAGGGGATGAGCTGTGGGTAGGGGT 145 ||| |||||| ||||| ||| | ||||| ||||||| ||| ||||||| Sbjct 973 GCCTTGGAGGACCGAAT------ATGCGGCAAAATACAGGGATGACTCATGGCTAGGGGT 920 Query 146 GAAAGGCTAAACAAACTTGGAAATAGCTGGTTCTCTCCGAAAACTATTTAGGTAGTGC 203 ||||||| || ||| | || |||||||||| || |||| |||||| |||| || Sbjct 919 GAAAGGCCAACCAAGATCAGATATAGCTGGTTTTCCGGGAAATCTATTTTCGTAGAGC 862 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1686217370112