Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vaccinium_20macrocarpon_20[genbank_20GCA_5F000775335.1_202014-09-04] 200,203 sequences; 414,621,889 total letters Query= AAMG01002194.1 Length=319 Score E Sequences producing significant alignments: (Bits) Value seq198635 95.1 2e-17 seq199873 80.6 5e-13 seq197721 80.6 5e-13 seq199433 77.0 6e-12 >seq198635 Length=10497 Score = 95.1 bits (104), Expect = 2e-17 Identities = 133/182 (73%), Gaps = 11/182 (6%) Strand=Plus/Plus Query 55 GCGATAAGCTGCGGGGAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAA 114 |||| | ||| |||||||| | ||| | | | |||||| ||||| |||||| || || Sbjct 5067 GCGAAATGCTTCGGGGAGTT-GAAAATAAGCATAGATCCGGAGATTCCCGAATAGGTCAA 5125 Query 115 CCCGGCCCTTTGGGTCATTGCATGCTGAATACATAGGTATGCAA-AGCGAACGCGGCGAA 173 || ||| | | ||| |||||||| ||| || | ||| || ||| |||||| Sbjct 5126 CC------TTTCGAAC--TGC-TGCTGAATCCATGGGCAGACAAGAGACAACCTGGCGAA 5176 Query 174 CTGAAACATCTAAGTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGA 233 ||||||||||| |||||| ||||||||||| ||| | ||||||| ||||| ||||| Sbjct 5177 CTGAAACATCTTAGTAGCCAGAGGAAAAGAAAGCAAAAGCGATTCCCGTAGTAGCGGCGA 5236 Query 234 GC 235 || Sbjct 5237 GC 5238 >seq199873 Length=7618 Score = 80.6 bits (88), Expect = 5e-13 Identities = 59/69 (86%), Gaps = 0/69 (0%) Strand=Plus/Minus Query 169 GCGAACTGAAACATCTAAGTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGT 228 |||||||||||||||| ||||||| |||||| |||||||||||||| || ||||| Sbjct 3277 GCGAACTGAAACATCTGAGTAGCTAAAGGAAAGGAAATCAACCGAGACCCCGTTAGTAGC 3218 Query 229 GGCGAGCGA 237 ||||||||| Sbjct 3217 GGCGAGCGA 3209 >seq197721 Length=472 Score = 80.6 bits (88), Expect = 5e-13 Identities = 64/77 (83%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 175 TGAAACATCTAAGTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAG 234 |||||||||| |||||| ||||||||||| ||| | ||||||| ||||| |||||| Sbjct 321 TGAAACATCTTAGTAGCCAGAGGAAAAGAAAGCAAAAGCGATTCCCGTAGTAGCGGCGAG 380 Query 235 CGAAATGGGATGAGCCT 251 |||||||||| ||||| Sbjct 381 CGAAATGGGAGCAGCCT 397 >seq199433 Length=3539 Score = 77.0 bits (84), Expect = 6e-12 Identities = 59/69 (86%), Gaps = 1/69 (1%) Strand=Plus/Plus Query 169 GCGAACTGAAACATCTAAGTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGT 228 |||||||||||||||| ||||||| |||||| |||||||||||||| || ||||| Sbjct 1459 GCGAACTGAAACATCTGAGTAGCTAAAGGAAAGGAAATCAACCGAGA-CCCGTTAGTAGC 1517 Query 229 GGCGAGCGA 237 ||||||||| Sbjct 1518 GGCGAGCGA 1526 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 916561335648