Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vaccinium_20macrocarpon_20[genbank_20GCA_5F000775335.1_202014-09-04] 200,203 sequences; 414,621,889 total letters Query= AAMG01002223.1 Length=366 Score E Sequences producing significant alignments: (Bits) Value seq184018 82.4 2e-13 seq145216 77.0 7e-12 >seq184018 Length=6353 Score = 82.4 bits (90), Expect = 2e-13 Identities = 80/103 (78%), Gaps = 0/103 (0%) Strand=Plus/Minus Query 107 TTCATCCTTCACGCTACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACT 166 ||| || |||||| | | ||||| |||| || ||| |||||| |||| |||| ||||| Sbjct 103 TTCTTCAGTCACGCGATATTGCTGGATCAGGCTTTCGCCCATTGTCCAAGATTCATCACT 44 Query 167 GCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAGTTCCAATGT 209 ||||| ||||| ||||| | |||||||||||| ||| ||| Sbjct 43 GCTGCTCCCCGTGGGAGTCCAGGCCGTGTCTCAGTCCCAGTGT 1 >seq145216 Length=2450 Score = 77.0 bits (84), Expect = 7e-12 Identities = 54/62 (87%), Gaps = 0/62 (0%) Strand=Plus/Minus Query 144 TCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAGTTC 203 ||||||| |||| ||||| |||||||||| ||| | ||||||||| ||||||||||||| Sbjct 2390 TCCATTGTCCAAGATTCCCCACTGCTGCCCCCCATGGGAGTTTGGGTCGTGTCTCAGTTC 2331 Query 204 CA 205 || Sbjct 2330 CA 2329 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1066660230336