Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vaccinium_20macrocarpon_20[genbank_20GCA_5F000775335.1_202014-09-04] 200,203 sequences; 414,621,889 total letters Query= AAMG01002236.1 Length=287 Score E Sequences producing significant alignments: (Bits) Value seq13785 172 9e-41 seq17258 98.7 2e-18 seq170340 80.6 4e-13 >seq13785 Length=248 Score = 172 bits (190), Expect = 9e-41 Identities = 159/199 (80%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 80 CTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCAGAACGGGGTGATTCTCTCC 139 |||||| || ||||||||||||||||| |||||||||||||||||||| |||| ||||| Sbjct 248 CTGGATAATAGCTGAACGCCTCTAAGTTAGAATCCATGCCAGAACGGGACGATTTTCTCC 189 Query 140 TGCACATCGTAGTCGGATACGAATAGGCTTCGGCCCCGAACCTTAGCAGGCCGGCAACGG 199 |||| ||||| |||||||||||||||||||||||| ||||||||||||| ||| Sbjct 188 AGCACGTCGTACGAGGATACGAATAGGCTTCGGCCCCGGACCTTAGCAGGCC-ATAACTC 130 Query 200 GCGTCCCGCGGAAGCGCGGGGCGCTCAGCTGGCGGATTGCAATTTCACCATGCGCAGGGA 259 | || |||| || | | | | |||||||| ||||||| || |||| |||| Sbjct 129 CTCTTTCGTAGAAGTCGGGAGAGGT-AATTGGCGGATAGCAATTTGACAGCGCGCTGGGA 71 Query 260 TAAATCCTTTGCAGACGAC 278 | ||||||||||||||||| Sbjct 70 TGAATCCTTTGCAGACGAC 52 >seq17258 Length=261 Score = 98.7 bits (108), Expect = 2e-18 Identities = 97/123 (79%), Gaps = 2/123 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||||| || ||| | | ||||||| | ||| || ||| || |||| Sbjct 251 GTACGAGAGGAACCGTTGA-TTC-GCACAATTGGTCATCGCGCTTGGTTGAAAAGCCAGT 194 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | |||||||||||| | | |||||||| |||||||||||||||||||||||| || | Sbjct 193 GGCGCGAAGCTACCGTGCGTCGGATTATGACTGAACGCCTCTAAGTCAGAATCCGGGCTA 134 Query 121 GAA 123 ||| Sbjct 133 GAA 131 >seq170340 Length=4255 Score = 80.6 bits (88), Expect = 4e-13 Identities = 84/108 (78%), Gaps = 2/108 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||||| || ||| | | ||||||| | ||| || ||| || |||| Sbjct 1677 GTACGAGAGGAACCGTTGA-TTC-GCACAATTGGTCATCGCGCTTGGTTGAAAAGCCAGT 1734 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCA 108 | |||||||||||| | | ||||||| |||||||||||||||||| Sbjct 1735 GGCGCGAAGCTACCGTGCGTCAGATTATGACTGAACGCCTCTAAGTCA 1782 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 817611188992