Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vaccinium_20macrocarpon_20[genbank_20GCA_5F000775335.1_202014-09-04] 200,203 sequences; 414,621,889 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq197427 183 2e-41 >seq197427 Length=19924 Score = 183 bits (202), Expect = 2e-41 Identities = 559/849 (66%), Gaps = 29/849 (3%) Strand=Plus/Minus Query 61096 ATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCCAAAGAC 61155 |||||||| || || ||||| ||||||||||||| || || |||||| | ||| ||| Sbjct 14505 ATGTACAAGAAAGCAGAAGCCTCCTTCTGGACGGCTGAAGAAGTCGATCTCTCCTCCGAC 14446 Query 61156 ATGAATGACTGGGAG----CGTTTATCGAGCGGTGAACAACATTTCATTAAACATGTGTT 61211 | |||||||| | | | ||| || || | ||| ||||| | || || | Sbjct 14445 CTCCGCCACTGGGAGGAAACCCTGACCGA-CGACGAGCGACACTTCATCACCCACGTCCT 14387 Query 61212 GGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACGTTTCGCGCA 61271 || ||||| ||||| || |||||||||||| ||||| | | | ||| | | Sbjct 14386 CGCCTTCTTCGCCGCCTCTGACGGTATCGTCTTGGAGAACCTGGCCGGCAGGTTCATGAA 14327 Query 61272 GGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGT 61331 |||||| || || | ||||| | || ||||||||||| || ||||| ||||| | Sbjct 14326 GGAGGTCCAGGTAGCTGAGGCCAGAGCCTTTTACGGCTTCCAAATCGCCATCGAGAACAT 14267 Query 61332 CCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGA-GCGGGCGGAACGTG 61390 |||||| || |||||||| | | |||| ||||||||| ||| | || | | | Sbjct 14266 CCACTCCGAAATGTACAGCCTCTTGCTCGAGTCGTACATCAAGGATTCTAACGAGAAG-G 14208 Query 61391 AACGATTGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGGCCT 61450 | || | ||| | || ||||||||||| || ||| | ||| || | |||||| Sbjct 14207 ACCGGCTTTTCCACGCGATCGAGACGATCCCTTGCGTGGAAAAGAAGGCCAAGTGGGCCC 14148 Query 61451 TCAATTGGATCACCAGTACAACGGCTA--CATTTGGTGAACGATTGCTGGCATTTGCGGT 61508 |||| |||||| | || ||| | | || | || ||| | | || ||||| Sbjct 14147 TCAAGTGGATCGACGGT-----GGCGAGTCTTTCGCCGAGCGAATCGTTGCCTTTGCTTG 14093 Query 61509 GGTCGAGGGTGTATTTTTC-AGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTG 61567 ||||| || | || ||| ||| | | || ||| ||||| ||| | || || || | Sbjct 14092 CGTCGAAGGGATTTTCTTCTCCGGGAGCTTCTG-CGCGATCTTCTGGCTCAAAAAGCGCG 14034 Query 61568 GACTTATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGGGCATGCATT 61627 | | ||||| || |||||||| ||| |||||||| ||| | ||||| ||| |||| | Sbjct 14033 GGTTGATGCCTGGGTTGACCTTCTCCAACGAGTTGATCTCAAGAGACGAAGGCTTGCACT 13974 Query 61628 GTGATTTTGCTGTTTTGCTATTCAAACGCTATCTGGTGAATC---GTCCGTCGGAGGAGC 61684 | |||||||| ||||| | ||| | || ||| || | | ||||||| Sbjct 13973 GCGATTTTGCCTGCTTGCTGT----ACG--AGTTGCTGACTCAGAAGCTGAGCGAGGAGC 13920 Query 61685 GTGTGGGTGAGATTGTTCGTGAGGCGGTAACTATCGAACAGGAATTTCTGACTGACGCTT 61744 | || | | ||||| || ||||| ||||| ||| ||| | ||||| Sbjct 13919 GAGTCAGGGGAATTGTGGCCGATGCGGTGGAGATCGAGAGGGAGTTTGTCTGCGACGCGC 13860 Query 61745 TGCCCGTCT-CACTCATCGGCATGAATTGTGGACTAATGTCGCAGTATATTGAATTTGTT 61803 || |||| | | || | ||||||||| | | | ||| || ||||||||||| || Sbjct 13859 TG-CCGTGTGCTCTGGTGGGCATGAATGGCGATTTGATGAGCCAATATATTGAATTCGTC 13801 Query 61804 GCCGACCGTCTGTTGGTCGATTT-GGGTATGAAGCGGATCTATAATACGAAAAACCCATT 61862 || || | ||||||| | ||| ||||||| | || || || |||| || || || Sbjct 13800 GCTGATAGGCTGTTGGGTGCTTTGGGGTATGGA-AAAATGTACGATGCGAAGAATCCGTT 13742 Query 61863 TGATTTCATGGACATGATTTCGCTGGATGGCAAGACGAATTTTTTCGAGAAACGTGTAGG 61922 ||||| ||||| |||| || | || ||||| || ||||||||||| | || || Sbjct 13741 TGATTGGATGGAGCTGATCAGTTTGCAGGGGAAGACAAACTTTTTCGAGAAGAGGGTTGG 13682 Query 61923 CGACTATCA 61931 || || || Sbjct 13681 AGAGTACCA 13673 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396597944391920