Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Vaccinium_20macrocarpon_20[genbank_20GCA_5F000775335.1_202014-09-04]
200,203 sequences; 414,621,889 total letters
Query= NC_010671.1
Length=124279
Score E
Sequences producing significant alignments: (Bits) Value
seq197427 183 2e-41
>seq197427
Length=19924
Score = 183 bits (202), Expect = 2e-41
Identities = 559/849 (66%), Gaps = 29/849 (3%)
Strand=Plus/Minus
Query 61096 ATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCCAAAGAC 61155
|||||||| || || ||||| ||||||||||||| || || |||||| | ||| |||
Sbjct 14505 ATGTACAAGAAAGCAGAAGCCTCCTTCTGGACGGCTGAAGAAGTCGATCTCTCCTCCGAC 14446
Query 61156 ATGAATGACTGGGAG----CGTTTATCGAGCGGTGAACAACATTTCATTAAACATGTGTT 61211
| |||||||| | | | ||| || || | ||| ||||| | || || |
Sbjct 14445 CTCCGCCACTGGGAGGAAACCCTGACCGA-CGACGAGCGACACTTCATCACCCACGTCCT 14387
Query 61212 GGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACGTTTCGCGCA 61271
|| ||||| ||||| || |||||||||||| ||||| | | | ||| | |
Sbjct 14386 CGCCTTCTTCGCCGCCTCTGACGGTATCGTCTTGGAGAACCTGGCCGGCAGGTTCATGAA 14327
Query 61272 GGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGT 61331
|||||| || || | ||||| | || ||||||||||| || ||||| ||||| |
Sbjct 14326 GGAGGTCCAGGTAGCTGAGGCCAGAGCCTTTTACGGCTTCCAAATCGCCATCGAGAACAT 14267
Query 61332 CCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGA-GCGGGCGGAACGTG 61390
|||||| || |||||||| | | |||| ||||||||| ||| | || | | |
Sbjct 14266 CCACTCCGAAATGTACAGCCTCTTGCTCGAGTCGTACATCAAGGATTCTAACGAGAAG-G 14208
Query 61391 AACGATTGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGGCCT 61450
| || | ||| | || ||||||||||| || ||| | ||| || | ||||||
Sbjct 14207 ACCGGCTTTTCCACGCGATCGAGACGATCCCTTGCGTGGAAAAGAAGGCCAAGTGGGCCC 14148
Query 61451 TCAATTGGATCACCAGTACAACGGCTA--CATTTGGTGAACGATTGCTGGCATTTGCGGT 61508
|||| |||||| | || ||| | | || | || ||| | | || |||||
Sbjct 14147 TCAAGTGGATCGACGGT-----GGCGAGTCTTTCGCCGAGCGAATCGTTGCCTTTGCTTG 14093
Query 61509 GGTCGAGGGTGTATTTTTC-AGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTG 61567
||||| || | || ||| ||| | | || ||| ||||| ||| | || || || |
Sbjct 14092 CGTCGAAGGGATTTTCTTCTCCGGGAGCTTCTG-CGCGATCTTCTGGCTCAAAAAGCGCG 14034
Query 61568 GACTTATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGGGCATGCATT 61627
| | ||||| || |||||||| ||| |||||||| ||| | ||||| ||| |||| |
Sbjct 14033 GGTTGATGCCTGGGTTGACCTTCTCCAACGAGTTGATCTCAAGAGACGAAGGCTTGCACT 13974
Query 61628 GTGATTTTGCTGTTTTGCTATTCAAACGCTATCTGGTGAATC---GTCCGTCGGAGGAGC 61684
| |||||||| ||||| | ||| | || ||| || | | |||||||
Sbjct 13973 GCGATTTTGCCTGCTTGCTGT----ACG--AGTTGCTGACTCAGAAGCTGAGCGAGGAGC 13920
Query 61685 GTGTGGGTGAGATTGTTCGTGAGGCGGTAACTATCGAACAGGAATTTCTGACTGACGCTT 61744
| || | | ||||| || ||||| ||||| ||| ||| | |||||
Sbjct 13919 GAGTCAGGGGAATTGTGGCCGATGCGGTGGAGATCGAGAGGGAGTTTGTCTGCGACGCGC 13860
Query 61745 TGCCCGTCT-CACTCATCGGCATGAATTGTGGACTAATGTCGCAGTATATTGAATTTGTT 61803
|| |||| | | || | ||||||||| | | | ||| || ||||||||||| ||
Sbjct 13859 TG-CCGTGTGCTCTGGTGGGCATGAATGGCGATTTGATGAGCCAATATATTGAATTCGTC 13801
Query 61804 GCCGACCGTCTGTTGGTCGATTT-GGGTATGAAGCGGATCTATAATACGAAAAACCCATT 61862
|| || | ||||||| | ||| ||||||| | || || || |||| || || ||
Sbjct 13800 GCTGATAGGCTGTTGGGTGCTTTGGGGTATGGA-AAAATGTACGATGCGAAGAATCCGTT 13742
Query 61863 TGATTTCATGGACATGATTTCGCTGGATGGCAAGACGAATTTTTTCGAGAAACGTGTAGG 61922
||||| ||||| |||| || | || ||||| || ||||||||||| | || ||
Sbjct 13741 TGATTGGATGGAGCTGATCAGTTTGCAGGGGAAGACAAACTTTTTCGAGAAGAGGGTTGG 13682
Query 61923 CGACTATCA 61931
|| || ||
Sbjct 13681 AGAGTACCA 13673
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 396597944391920
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |