Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vaccinium_20macrocarpon_20[genbank_20GCA_5F000775335.1_202014-09-04] 200,203 sequences; 414,621,889 total letters Query= NC_031922.1 Length=174830 Score E Sequences producing significant alignments: (Bits) Value seq198569 295 7e-75 seq198282 203 4e-47 seq197706 168 7e-37 seq198621 149 7e-31 seq197127 145 9e-30 seq199332 143 3e-29 seq200167 141 1e-28 seq198491 118 1e-21 seq198258 118 1e-21 seq198608 113 5e-20 seq198484 111 2e-19 seq197886 109 6e-19 seq197639 98.7 1e-15 seq198248 87.8 2e-12 seq131584 82.4 9e-11 >seq198569 Length=8129 Score = 295 bits (326), Expect = 7e-75 Identities = 341/457 (75%), Gaps = 18/457 (4%) Strand=Plus/Plus Query 160896 TGCTACATGGGTCGCGAGTGGGAACTTTCCTACCGCCTCGGCATGCGCCCCTGGATCTGC 160955 || || |||||||| |||||||||||| | ||| | || ||||| || ||||| ||| Sbjct 2777 TGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCGTTTGGGTATGCGACCTTGGAT-TGC 2835 Query 160956 -GTTGCATATTCTGCACCTGTTGCTGCTGCGAGTGCAGTATTCCTCGTCTATCCTTTCGG 161014 ||||||||||| || |||||||| ||||| | ||| || ||| | ||||||| | || Sbjct 2836 TGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATCTATCCAATTGG 2895 Query 161015 TCAAGGTTCTTTCTCTGATGGTATGCCCCTGGGTATCTCTGGTACCTTCAACTTCATGCT 161074 |||||| ||| |||||||| ||||| || || ||||||||||| |||||||||||| | Sbjct 2896 TCAAGGAAGTTTTTCTGATGGGATGCCTCTAGGAATCTCTGGTACTTTCAACTTCATGAT 2955 Query 161075 TGTCTTCCAGGCAGAACACAACATCCTGATGCACCC-CTTCCACATGTTGGGTGTTGCTG 161133 || |||||||| || ||||| ||||| |||||||| ||| | ||||| ||||| |||| Sbjct 2956 CGTATTCCAGGCTGAGCACAATATCCTTATGCACCCATTTCGATATGTTAGGTGTAGCTG 3015 Query 161134 GTGTCTTCGGTGGTTCTCTGTTCTCCGCAATGCATGGTTCACTGGTTACTTCTTCCCTGG 161193 |||| || | || ||||| ||| || ||||||||||| |||| ||||| | || Sbjct 3016 GTGTATTGGACGGCTCTCTATTCAATGCTATGCATGGTTCCTTGGTAGCTTCTAATCAGG 3075 Query 161194 TTCGTGAAACCACTGAGAACGAGTCCCAGAACTATGGTTACAAGTTTGGTCAAGAAGAAG 161253 |||||||| || || | || |||| ||||||||||| || | Sbjct 3076 -----GAAACCAC----------CCCGCTAATGAAGGGTACAGATTTGGTCAAGAGGAGG 3120 Query 161254 AGACCTACAACATCGTCGCTGCTCATGGTTACTTCGGTCGCCTGATCTTCCAATACGCTT 161313 | || || || || || |||||||||||||| || || || ||||||||||||| ||| Sbjct 3121 AAACTTATAATATTGTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCTA 3180 Query 161314 CCTTCAACAACTCCCGTTCGTTGCACTTCTTCCTCGC 161350 ||||||||||| ||||| || || || ||||| || Sbjct 3181 GTTTCAACAACTCTCGTTCTTTACATTTTTTCCTAGC 3217 >seq198282 Length=4172 Score = 203 bits (224), Expect = 4e-47 Identities = 210/275 (76%), Gaps = 0/275 (0%) Strand=Plus/Plus Query 164581 TGGTCACTGCCAACCGCTTCTGGTCTCAGATTTTTGGTATTGCTTTCAGCAATAAGCGTT 164640 ||||||| ||||||||||| ||||| || || ||||| ||||||| |||||| |||| Sbjct 1 TGGTCACCGCCAACCGCTTTTGGTCCCAAATCTTTGGGGTTGCTTTTTCCAATAAACGTT 60 Query 164641 GGTTGCACTTCTTTATGCTCTTTGTTCCTGTCATGGGACTTTGGACAAGTTCTATTGGTA 164700 |||| || ||||||||| | ||||| || || | || | |||| ||| || |||| Sbjct 61 GGTTACATTTCTTTATGTTATTTGTACCAGTAACCGGTTTATGGATGAGTGCTCTTGGAG 120 Query 164701 TCATCGGTCTCGCACTCAATCTTCGTGCTTATGATTTTGTGTCTCAGGAGATTAGAGCAG 164760 | ||||||| || || || || ||||| ||||| || || |||||||| ||| | |||| Sbjct 121 TAGTCGGTCTAGCCCTGAACCTACGTGCCTATGACTTCGTTTCTCAGGAAATTCGCGCAG 180 Query 164761 CAGAGGATCCTGAATTTGAGACGTTCTATACGAAGAACATCCTCCTCAATGAAGGACTCC 164820 | || ||||||||||||||||| ||||| || || ||||| ||| | ||||| || | | Sbjct 181 CGGAAGATCCTGAATTTGAGACTTTCTACACCAAAAACATTCTCTTAAATGAGGGTATTC 240 Query 164821 GTGCCTGGATGGCTCCAGTAGACCAGCCACACGAA 164855 |||| |||||||| | ||| ||||| || ||| Sbjct 241 GTGCTTGGATGGCGGCTCAAGATCAGCCTCATGAA 275 >seq197706 Length=393 Score = 168 bits (186), Expect = 7e-37 Identities = 242/340 (71%), Gaps = 11/340 (3%) Strand=Plus/Plus Query 160585 TAACTTCTACAAACAATCGTCTTTACGTCGGTTGGTTCGGTGTGCTGATGATCCCAACT- 160643 ||||| || || || |||||||| | || |||| ||||| |||||||||| || Sbjct 55 TAACTAGCACTAAAAACTGTCTTTACATTGGATGGTATGGTGTTTTGATGATCCCTACGG 114 Query 160644 --------CTGTTGGCAGCAACCGTCTGC-TTTATTACTGCGTTCGTTGCTGCTCCCCCC 160694 || || | ||||| |||| ||||||| || ||| |||||||||| || Sbjct 115 ACCCCACCCTATTAACTGCAACT-TCTGTATTTATTATCGCCTTCATTGCTGCTCCTCCA 173 Query 160695 GTGGACATCGACGGTATCCGTGAACCCGTTGCTGGTTCACTGATGTATGGAAACAACATC 160754 || || || || ||||| |||||||| ||| |||| || || | ||||| ||||| || Sbjct 174 GTCGATATTGATGGTATTCGTGAACCTGTTTCTGGGTCTCTACTTTATGGGAACAATATT 233 Query 160755 ATCTCTGGTGCAGTTGTTCCTTCTTCCAACGCAATTGGTCTTCACTTCTACCCCATTTGG 160814 ||||| ||||| || ||||| |||| || || || | ||||| ||||| || ||| Sbjct 234 ATCTCAGGTGCCATTATTCCTACTTCTGCAGCTATAGGCTTGCACTTTTACCCGATATGG 293 Query 160815 GAAGCTGCATCTCTTGATGAATGGCTCTACAATGGTGGTCCTTACCAACTGGTCGTATTT 160874 ||||||||||| ||||||||||| | |||||||| |||||||| | || | || | Sbjct 294 GAAGCTGCATCCGTTGATGAATGGTTATACAATGGCGGTCCTTATGAGCTAATTGTTCTA 353 Query 160875 CACTTCCTGATCGGCATCTTCTGCTACATGGGTCGCGAGT 160914 |||||| | | || | || || |||||||| |||| Sbjct 354 CACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGT 393 >seq198621 Length=9897 Score = 149 bits (164), Expect = 7e-31 Identities = 142/182 (78%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 164466 GCTCTTCTCTGTGCTATTCATGGTGCTACCGTAGAGAATACTTTGTTTGAAGATGGTGAA 164525 ||| | || || ||||||||||| || ||||| || |||||||| |||||||||||||| Sbjct 26 GCTTTGCTATGCGCTATTCATGGCGCCACCGTGGAAAATACTTTATTTGAAGATGGTGAT 85 Query 164526 CAATCAAATACTTTCAAGGCATTCGAGCCTACTCAAGAGGAAGAGACTTACTCGATGGTC 164585 ||||||| ||| || || | || ||||||| ||||| ||||| || |||||| Sbjct 86 GGTGCAAATACATTCCGTGCTTTTAACCCAACTCAAGCCGAAGAAACTTATTCAATGGTC 145 Query 164586 ACTGCCAACCGCTTCTGGTCTCAGATTTTTGGTATTGCTTTCAGCAATAAGCGTTGGTTG 164645 || ||||||||||| ||||| || || ||||| ||||||| |||||| |||||||| Sbjct 146 ACCGCCAACCGCTTTTGGTCCCAAATCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTA 205 Query 164646 CA 164647 || Sbjct 206 CA 207 >seq197127 Length=16832 Score = 145 bits (160), Expect = 9e-30 Identities = 122/150 (81%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 160988 TGCAGTATTCCTCGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGATGGTATGCCCCTGGG 161047 ||| || ||| | ||||||| | |||||||| ||| |||||||| ||||| || || Sbjct 16831 TGCTGTTTTCTTGATCTATCCAATTGGTCAAGGAAGTTTTTCTGATGGGATGCCTCTAGG 16772 Query 161048 TATCTCTGGTACCTTCAACTTCATGCTTGTCTTCCAGGCAGAACACAACATCCTGATGCA 161107 ||||||||||| |||||||||||| | || |||||||| || ||||| ||||| ||||| Sbjct 16771 AATCTCTGGTACTTTCAACTTCATGATCGTATTCCAGGCTGAGCACAATATCCTTATGCA 16712 Query 161108 CCCCTTCCACATGTTGGGTGTTGCTGGTGT 161137 ||| || |||||||| ||||| |||||||| Sbjct 16711 CCCATTTCACATGTTAGGTGTAGCTGGTGT 16682 >seq199332 Length=2940 Score = 143 bits (158), Expect = 3e-29 Identities = 309/459 (67%), Gaps = 5/459 (1%) Strand=Plus/Minus Query 163897 TGGACGACTGGCTTAAACGAGATCGCTTTGTCTTTGTGGGTTGGTCTGGATTACTTCTTT 163956 |||| |||||| | |||| || || || ||||| |||||||| || || | || | Sbjct 2527 TGGATGACTGGTTACGGAGAGACCGTTTCGTTTTTGTAGGTTGGTCCGGTCTATTGCTCT 2468 Query 163957 TTCCCACTGCTTATCTTGCAATTGGTGGCTGGCTTACTGGTACAACGTTTGTTACCAGTT 164016 || | ||| ||| | || | || || ||| |||| |||||||| ||||| || | Sbjct 2467 TTTCTTGTGCCTATTTCGCCTTAGGAGGTTGGTTTACAGGTACAACCTTTGTAACTTCAT 2408 Query 164017 GGTACACCCACGGTCTCGCGTCTAGTTACCTTGAGGG-TGCTAATTTCCTTACAGCGGCT 164075 |||| || ||||| | ||| | || | ||||| ||| || ||| | || ||||| Sbjct 2407 GGTATACACACGGATTGGCGAGTTCCTATTTGGAGGGCTGC-AACTTCTTAACCGCGGCA 2349 Query 164076 GTGTCAACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCT 164135 || || || |||||| || | | | | ||| | | |||| |||||||| || | Sbjct 2348 GTTTCTACTCCTGCTAATAGTTTACTTTACTCTTTGTTGTTACTATGGGGTCCAGAAGCA 2289 Query 164136 CAGGGGGACTTCATTAGGTGGTGCCAACTTGGGGGACTCTGGGCTTTTGTGGCGTTCCAC 164195 || || || || | | | ||||| ||| | || || || ||| | ||||| || ||||| Sbjct 2288 CAAGGCGATTTTACTCGTTGGTGTCAATTAGGCGGTCTGTGGACGTTTGTTGCTCTCCAC 2229 Query 164196 GGATCTTTCGCTCTGATCGGTTTCATGCTTC---GGCAGTTTGAAATTGCACGTCTTGTA 164252 || |||| | || || |||| | | | | || |||||| |||| || ||| Sbjct 2228 GGCGCTTTTGGACTAATAGGTTGGTTTCATTAAAGTCAATTTGAACTTGCTCGATCTGTT 2169 Query 164253 GGTATCCGTCCGTACAATGCTATTGCGTTCTCTGGTCCGATTGCTGTCTTTGTCAGCGTT 164312 | || || || ||||| || || ||||||| ||| ||||| || ||||| || Sbjct 2168 CAATTGCGACCTTATAATGCAATCGCATTCTCTGCTCCAATTGCGGTTTTTGTTTCTGTA 2109 Query 164313 TTCCTTATGTACCCTCTCGGGCAATCTAGTTGGTTCTTT 164351 ||||| || || || || || || ||| ||||||||||| Sbjct 2108 TTCCTGATTTATCCGCTAGGTCAGTCTGGTTGGTTCTTT 2070 >seq200167 Length=15642 Score = 141 bits (156), Expect = 1e-28 Identities = 116/141 (82%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 161033 TGGTATGCCCCTGGGTATCTCTGGTACCTTCAACTTCATGCTTGTCTTCCAGGCAGAACA 161092 ||||||||| || || ||||||||||| |||||||| ||| || |||||||| || || Sbjct 10826 TGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTAATGAGCGTATTCCAGGCTGAGCA 10767 Query 161093 CAACATCCTGATGCACCCCTTCCACATGTTGGGTGTTGCTGGTGTCTTCGGTGGTTCTCT 161152 ||||||||| |||||||| || |||||||| ||||| |||||||| || ||||| || || Sbjct 10766 CAACATCCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTGTATTTGGTGGCTCCCT 10707 Query 161153 GTTCTCCGCAATGCATGGTTC 161173 |||| | ||||||||||| Sbjct 10706 GTTCAGTACTATGCATGGTTC 10686 >seq198491 Length=6715 Score = 118 bits (130), Expect = 1e-21 Identities = 140/186 (75%), Gaps = 4/186 (2%) Strand=Plus/Minus Query 164340 AGTTGGTTCTTTGCCCCCTCG-TTTGGGGTCGCGGCGATCTTCAGATTCCTCTTGTTCCT 164398 |||||||| ||| | ||| | ||||| || | || || || ||||| || | || | Sbjct 5667 AGTTGGTTTTTT--CGCCTAGCTTTGGCGTATCCGCTATATTTCGATTCATCCTTTTTTT 5610 Query 164399 CCAAGGTTTCCATAACTGGACACTCAACCCCTTCCATATGATGGGTGTTGCAGGCATCCT 164458 ||||||||| |||| ||||| | ||||| || ||||||||||| ||||| || | | Sbjct 5609 TCAAGGTTTC-ATAATTGGACGTTGAACCCATTTCATATGATGGGAGTTGCCGGTGTATT 5551 Query 164459 TGGTGGTGCTCTTCTCTGTGCTATTCATGGTGCTACCGTAGAGAATACTTTGTTTGAAGA 164518 || | ||| | || || ||||||||||| || ||||| || |||||||| |||||||| Sbjct 5550 AGGCGCGGCTTTGCTATGCGCTATTCATGGCGCCACCGTGGAAAATACTTTATTTGAAGA 5491 Query 164519 TGGTGA 164524 |||||| Sbjct 5490 TGGTGA 5485 >seq198258 Length=3934 Score = 118 bits (130), Expect = 1e-21 Identities = 113/145 (78%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 161029 CTGATGGTATGCCCCTGGGTATCTCTGGTACCTTCAACTTCATGCTTGTCTTCCAGGCAG 161088 ||| ||| ||||| |||| || ||| |||| ||||||||| || | || ||| |||| | Sbjct 3138 CTGGTGGGATGCCTATGGGAATATCTAGTACTTTCAACTTCTTGATCGTATTCTAGGCTG 3197 Query 161089 AACACAACATCCTGATGCACCCCTTCCACATGTTGGGTGTTGCTGGTGTCTTCGGTGGTT 161148 | ||||| ||||| | ||||| || |||||||| ||||| |||||||| ||||| || | Sbjct 3198 AGCACAATATCCTTTTTCACCCATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCT 3257 Query 161149 CTCTGTTCTCCGCAATGCATGGTTC 161173 |||| || || ||||||||||| Sbjct 3258 CTCTATTTAGTGCTATGCATGGTTC 3282 >seq198608 Length=9413 Score = 113 bits (124), Expect = 5e-20 Identities = 126/167 (75%), Gaps = 1/167 (1%) Strand=Plus/Minus Query 164646 CACTTCTTTATGCTCTTTGTTCCTGTCATGGGACTTTGGACAAGTTCTATTGGTATCATC 164705 || ||||||||| | ||||| || || | || | |||| ||| || |||| | || Sbjct 2984 CATTTCTTTATGTTATTTGTACCAGTAACCGGTTTATGGATGAGTGCTCTTGGAGTAGTC 2925 Query 164706 GGTCTCGCACTCAATCTTCGTGCTTATGATTTTGTGTCTCAGGAGATTAGAGCAGCAGAG 164765 ||||| || || || || ||||| ||||| || || |||||||| ||| | ||||| || Sbjct 2924 GGTCTAGCCCTGAACCTACGTGCCTATGACTTCGTTTCTCAGGAAATTCGCGCAGCGGAA 2865 Query 164766 GATCCTGAATTTGAGACGTTCTATACGAAGAACATCCTCCTCAATGA 164812 ||||||||||||||||| ||||| || || ||||| ||| | || || Sbjct 2864 GATCCTGAATTTGAGACTTTCTACACCAA-AACATTCTCTTAAACGA 2819 >seq198484 Length=6561 Score = 111 bits (122), Expect = 2e-19 Identities = 111/144 (77%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 161415 AACGGATTCAACTTCAACCAGTCCATCATGGATGGTCAGGGCAAAGTCCTGAACACCTGG 161474 || || ||||| |||||||| || | | ||| |||| ||| || | || |||||| Sbjct 6234 AATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGCCGTGTAATTAATACCTGG 6293 Query 161475 GCTGACGTTCTGAATCGTGCTAACCTTGGTATGGAAGTAATGCACGAGCGTAATGCTCAC 161534 || || | | || ||||||||||||||||||||||| ||||| || ||||||||||| Sbjct 6294 GCCGATATCATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCAT 6353 Query 161535 AACTTCCCTCTGGATCTCGCTGCT 161558 ||||||||||| || || || ||| Sbjct 6354 AACTTCCCTCTAGACCTAGCGGCT 6377 >seq197886 Length=1258 Score = 109 bits (120), Expect = 6e-19 Identities = 185/268 (69%), Gaps = 5/268 (2%) Strand=Plus/Plus Query 161296 TGATCTTCCAATACGCTTCCTTCAACAACTCCCGTTCGTTGCACTTCTTCCTCGCAGCAT 161355 ||||||||||||| | | | || || || || | || || || |||||||| | | | Sbjct 341 TGATCTTCCAATATGTTACTTTTAATAATTCTCATTTTTTACATTTCTTCCTAACTGTTT 400 Query 161356 GGCCTGTTGTCGGTATCTGGTTCACTGCACTTGGTGTCTCCACCATGGCATTCAACCTGA 161415 ||||||| | ||||||| ||||| || | ||| | | |||| ||||||| | Sbjct 401 GGCCTGTAATAGGTATCTAGTTCATTGTTTTAGGTATTAGCGTTGTGGCTGTCAACCTAA 460 Query 161416 ACGGATTCAACTTCAACCAGTCCATCATGGATGGTCAGGGCAAAGTCCTGAACACCTGGG 161475 | || || || |||||||| ||| | | ||| ||| || || | || || |||| Sbjct 461 ATGGTTTGAATTTCAACCAATCCGTAGTTGATAATCAAGGTCGTGTAATTAAGACTTGGG 520 Query 161476 CTGACGTTCTGAATCGTGCTAACCTTGGTATGGAAGT-----AATGCACGAGCGTAATGC 161530 |||| | | || | ||||||| |||||| | |||| || || || |||||||| Sbjct 521 CTGATATCATTAACCATGCTAACTTTGGTACGAAAGTTGGAGTATTCATGAACGTAATGC 580 Query 161531 TCACAACTTCCCTCTGGATCTCGCTGCT 161558 ||| ||||||||||| || || | |||| Sbjct 581 TCATAACTTCCCTCTAGACCTAGTTGCT 608 >seq197639 Length=228 Score = 98.7 bits (108), Expect = 1e-15 Identities = 90/114 (79%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 161445 GATGGTCAGGGCAAAGTCCTGAACACCTGGGCTGACGTTCTGAATCGTGCTAACCTTGGT 161504 ||| |||| ||| || | || |||||||| || | | || ||||||||||||||| Sbjct 219 GATAGTCAAGGCCGTGTAATTAATACCTGGGCCGATATCATTAACCGTGCTAACCTTGGT 160 Query 161505 ATGGAAGTAATGCACGAGCGTAATGCTCACAACTTCCCTCTGGATCTCGCTGCT 161558 |||||||| ||||| || ||||||||||| ||||||||||| || || || ||| Sbjct 159 ATGGAAGTTATGCATGAACGTAATGCTCATAACTTCCCTCTAGACCTAGCGGCT 106 >seq198248 Length=3867 Score = 87.8 bits (96), Expect = 2e-12 Identities = 89/116 (77%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 161340 TTCTTCCTCGCAGCATGGCCTGTTGTCGGTATCTGGTTCACTGCACTTGGTGTCTCCACC 161399 || ||||| || || |||||||| || ||||||||||||||||| | ||| || ||| Sbjct 391 TTTTTCCTAGCTGCTTGGCCTGTAGTAGGTATCTGGTTCACTGCTTTAGGTATCAGCACT 332 Query 161400 ATGGCATTCAACCTGAACGGATTCAACTTCAACCAGTCCATCATGGATGGTCAGGG 161455 ||||| ||||| || || || ||||| |||||||| || | | ||| |||| || Sbjct 331 ATGGCTTTCAATCTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGG 276 >seq131584 Length=1887 Score = 82.4 bits (90), Expect = 9e-11 Identities = 54/60 (90%), Gaps = 0/60 (0%) Strand=Plus/Minus Query 161492 TGCTAACCTTGGTATGGAAGTAATGCACGAGCGTAATGCTCACAACTTCCCTCTGGATCT 161551 ||||||||||||||||||||| ||||| || ||||||||||| ||||||||||| || || Sbjct 1887 TGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAACTTCCCTCTAGACCT 1828 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 557928260705200