Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vicia_20faba_20[genbank_20GCA_5F001375635.1_202015-04-20] 74,659 sequences; 80,362,707 total letters Query= NC_031903.1 Length=172345 Score E Sequences producing significant alignments: (Bits) Value seq63568 589 2e-163 seq65592 163 3e-35 seq67767 127 2e-24 seq56135 123 3e-23 seq47049 116 4e-21 >seq63568 Length=1222 Score = 589 bits (652), Expect = 2e-163 Identities = 708/960 (74%), Gaps = 2/960 (0%) Strand=Plus/Minus Query 159830 AACCGCCTCTATGTCGGTTGGTTCGGCGTCCTGATGATCCCAACTCTGTTGGCAGCAACT 159889 ||||| || || | || ||||| || || |||||||||| || | ||| | |||||| Sbjct 1056 AACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCCTACCTTATTGACCGCAACT 997 Query 159890 ATCTGC-TTCATCGTCGCCTTCATCGCTGCTCCCCCTGTGGACATCGATGGCATCCGTGA 159948 |||| || || |||| ||||| ||||| || || || || || ||||| || ||||| Sbjct 996 -TCTGTATTTATTATCGCTTTCATTGCTGCCCCTCCAGTAGATATTGATGGTATTCGTGA 938 Query 159949 ACCCGTCGCTGGTTCACTCATGTACGGTAACAACATCATCTCTGGTGCAGTTGTTCCCTC 160008 || || |||| || || | ||||| ||||| || || |||||||| || |||| | Sbjct 937 GCCTGTTTCTGGATCTCTACTTTACGGAAACAATATTATTTCTGGTGCCATTATTCCTAC 878 Query 160009 TTCCAACGCAATTGGTCTTCACTTCTATCCCATTTGGGAAGCCGCATCGCTCGACGAGTG 160068 ||| || || ||| | ||||| || || || |||||||| ||||| | || || || Sbjct 877 TTCTGCGGCTATCGGTTTGCACTTTTACCCGATATGGGAAGCTGCATCCGTTGATGAATG 818 Query 160069 GCTCTATAACGGTGGTCCTTTCCAACTCGTAGTCTTCCACTTCCTGATCGGCATCTATGC 160128 | | || || |||||||||| |||| | || | |||||| | | || | | Sbjct 817 GTTATACAATGGTGGTCCTTATGAACTAATTGTTCTACACTTCTTACTTGGTGTAGCTTG 758 Query 160129 CTATATGGGTCGTGAGTGGGAACTCTCTTACCGTCTCGGTATGCGTCCCTGGATCTGTGT 160188 || |||||||||||||||||||| || ||||| |||||||| || ||||| ||| Sbjct 757 TTACATGGGTCGTGAGTGGGAACTTAGTTTTCGTCTGGGTATGCGCCCTTGGATTGCTGT 698 Query 160189 TGCATACTCTGCTCCAGTCGCTGCTGCTTCTGCTGTATTCCTCGTCTACCCCTTCGGTCA 160248 |||||| || ||||| ||||| |||||| |||| || ||| | ||||||| | ||||| Sbjct 697 TGCATATTCAGCTCCCGTCGCAGCTGCTACTGCAGTTTTCTTGATCTACCCAATTGGTCA 638 Query 160249 GGGTTCTTTCTCCGATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTATATGCTTGT 160308 || || || |||| ||||||||| || |||||||||||||| |||| |||| |||| Sbjct 637 AGGAAGCTTTTCAGATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGATTGT 578 Query 160309 ATTCCAAGCAGAACACAATATCCTTATGCATCCGTTCCACATGCTCGGTGTTGCTGGGGT 160368 ||| || || || || ||||| |||||||| || || |||||| | ||||| ||||| || Sbjct 577 ATTTCAGGCTGAGCATAATATTCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTGT 518 Query 160369 ATTCGGTGGATCTCTGTTCTCTGCTATGCATGGATCTCTGGTTACTTCTAGTCTCGTCAG 160428 |||||| || || || ||| ||||||||| || || |||| ||||||||| | |||| Sbjct 517 ATTCGGCGGCTCCCTATTCAGTGCTATGCACGGTTCCTTGGTAACTTCTAGTTTGATCAG 458 Query 160429 AGAGACGACAGAAACTGAGTCCCAGAACTATGGTTACAAGTTCGGTCAAGAGGAAGAGAC 160488 || || ||||||| ||| || || | ||||||| ||||||||||||||||| || Sbjct 457 GGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAGGAAGAAAC 398 Query 160489 TTACAACATCGTCGCAGCACATGGCTACTTCGGTCGTTTGATCTTCCAATATGCATCCTT 160548 || || || || || || || || || || || || ||||||||||||||||| || Sbjct 397 CTATAATATTGTAGCTGCTCACGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTTT 338 Query 160549 TAACAACTCACGCTCTCTGCACTTCTTCCTCGCTGCTTGGCCTGTTGTTGGAATCTGGTT 160608 ||||| || |||||| | || |||||||| |||||||||||||| || || |||||||| Sbjct 337 CAACAATTCTCGCTCTTTACATTTCTTCCTAGCTGCTTGGCCTGTAGTAGGTATCTGGTT 278 Query 160609 CACTGCCCTTGGTGTTTCTACCATGGCATTCAATCTCAATGGTTTCAACTTCAACCAGTC 160668 || || | ||| | || ||||| |||||| | ||||||||||| || ||||| || Sbjct 277 TACCGCGTTAGGTATCAGCACTATGGCTTTCAATTTAAATGGTTTCAATTTTAACCAATC 218 Query 160669 CATCTTGGACAACCAAGGACAAGTTCTGAACACTTGGGCAGACGTGCTTAACCGCGCTGG 160728 | | || | ||||| | || | || || ||||| || | ||||||| ||| Sbjct 217 TGTAGTTGATAGTCAAGGTCGTGTAATTAATACCTGGGCTGATATTATTAACCGTGCTAA 158 Query 160729 TCTGGGCATGGAAGTCATGCACGAGCGTAACGCTCACAACTTCCCTCTCGACCTTGCTGC 160788 || || |||||||| ||||| || ||||| ||||| || |||||||| ||||| ||||| Sbjct 157 CCTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAATTTCCCTCTAGACCTAGCTGC 98 >seq65592 Length=292 Score = 163 bits (180), Expect = 3e-35 Identities = 158/202 (78%), Gaps = 1/202 (0%) Strand=Plus/Plus Query 162334 GGACTCGCTCTTAATCTTCGTGCTTACGACTTTGTATCTCAGGAGATTCGTGCAGCGGAG 162393 || || || || || || ||||| || |||||||| ||||| || || || ||||| || Sbjct 18 GGTCTGGCCCTGAACCTGCGTGCCTATGACTTTGTTTCTCAAGAAATCCGCGCAGCAGAA 77 Query 162394 GATCCTGAATTTGAAACCTTCTACACCAAGAATATCCTCTTGAATGAAGGTCTTCGTGCA 162453 |||||||||||||| || ||||||||||| ||||| ||||| || |||||| ||||||| Sbjct 78 GATCCTGAATTTGAGACTTTCTACACCAAAAATATTCTCTTAAACGAAGGTATTCGTGCG 137 Query 162454 TGGTTGGCACCAGTTGATCAACCGCATGAGAACTTTGTATTCCCTGAGGAAGTTCTGCCT 162513 ||| |||| | ||||| || ||||| ||| || ||||||||||||| ||||| || Sbjct 138 TGGATGGCGGCTCAAGATCAGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCA 197 Query 162514 AGAGGTAACGCACTGTGAATGG 162535 | || ||||| || | ||||| Sbjct 198 CGTGGAAACGCTCT-TTAATGG 218 >seq67767 Length=213 Score = 127 bits (140), Expect = 2e-24 Identities = 145/192 (76%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 161788 CAACTTGGGGGACTCTGGAATTTTGTGGCGCTCCACGGGGCTTTCGCTCTGATTGGATTC 161847 ||| | || || || |||| |||||| || || ||||| ||||||| | || || || Sbjct 21 CAATTAGGTGGTCTGTGGACTTTTGTTGCTCTTCACGGTGCTTTCGGATTAATAGGTTTT 80 Query 161848 ATGCTTCGTCAGTTTGAACTTGCTCG-TCTTATCGGTATCCGTCCTTACAATGCTATTGC 161906 ||| | ||||| |||||||||||||| ||| || | | || ||||| ||||| || || Sbjct 81 ATGTTACGTCAATTTGAACTTGCTCGATCTGTTCAAT-TGCGGCCTTATAATGCAATCGC 139 Query 161907 TTTCTCTGGTCCTATTGCTGTTTTTGTCAGCGTCTTTCTCATATATCCTCTGGGACAGTC 161966 ||||| ||||| |||||||||||||| ||||| || || ||||| ||||| ||||| Sbjct 140 ATTCTCCGGTCCAATTGCTGTTTTTGTTTCTGTCTTCCTGATTTATCCACTGGGCCAGTC 199 Query 161967 GTCCTGGTTCTT 161978 |||||||| Sbjct 200 TGGTTGGTTCTT 211 >seq56135 Length=966 Score = 123 bits (136), Expect = 3e-23 Identities = 145/196 (74%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 160959 GGATGATCAATATGTCCTTGACGCTGCTGATGAAGCAGGTGTTGACGGACCCTACTCCTG 161018 ||||||| || |||| || || || || | ||||| ||||| || ||||| || Sbjct 367 GGATGATGTTTACATCCTAGATGCAGCGGAGAATGCAGGGGTTGAACTCCCTTACTCGTG 426 Query 161019 TCGTGCTGGTGCTTGCTCTACTTGTGCTGGTAAGATTGAGAGTGGTACTGTAGATCAATC 161078 |||||||| || ||||||||||||||||| ||| ||| ||| | || |||||||| Sbjct 427 CCGTGCTGGAGCGTGCTCTACTTGTGCTGGAAAGGTTGTTTCTGGCTCAGTCGATCAATC 486 Query 161079 TGATCAATCTTTCCTGGATGATGATCAACTTGAATCAGGATTTGTCCTGACCTGCGTTGC 161138 |||| |||||| |||| ||| ||||||| | ||| ||||| || ||||| ||| | Sbjct 487 TGATGGCTCTTTCTTGGACGATACTCAACTTAAGGAAGGCTTTGTGCTTACCTGTGTTTC 546 Query 161139 TTATCCCACTTCTGAT 161154 ||||| ||| ||||| Sbjct 547 ATATCCAACTGCTGAT 562 >seq47049 Length=776 Score = 116 bits (128), Expect = 4e-21 Identities = 135/182 (74%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 160975 CTTGACGCTGCTGATGAAGCAGGTGTTGACGGACCCTACTCCTGTCGTGCTGGTGCTTGC 161034 |||||| |||||| |||| || |||| || ||||| || | |||||| |||| Sbjct 461 CTTGACCATGCTGAAGAAGTTGGAATTGATCTCCCTTACTCATGCAGAGCTGGTTCTTGT 402 Query 161035 TCTACTTGTGCTGGTAAGATTGAGAGTGGTACTGTAGATCAATCTGATCAATCTTTCCTG 161094 ||| | ||||||||||| ||| ||||| || |||||||||||| |||||||| Sbjct 401 TCTTCATGTGCTGGTAAAGTTGTTGGTGGTGAAGTTGATCAATCTGATGGTTCTTTCCTT 342 Query 161095 GATGATGATCAACTTGAATCAGGATTTGTCCTGACCTGCGTTGCTTATCCCACTTCTGAT 161154 |||||||| || ||||| || ||||| || || || ||||||||||| | |||||| Sbjct 341 GATGATGACCAGATTGAAGGTGGTTTTGTTCTTACTTGTGTTGCTTATCCTAAGTCTGAT 282 Query 161155 GT 161156 || Sbjct 281 GT 280 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 550861435240200