Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vigna_20angularis_20[refseq_20GCF_5F001190045.1_202015-07-31] 37,375 sequences; 467,300,602 total letters Query= AAMG01000190.1 Length=117 Score E Sequences producing significant alignments: (Bits) Value seq2 125 4e-27 seq50 123 1e-26 seq175 120 2e-25 seq9 113 3e-23 seq4 86.0 3e-15 seq170 78.8 5e-13 >seq2 Length=35625406 Score = 125 bits (138), Expect = 4e-27 Identities = 100/118 (85%), Gaps = 2/118 (2%) Strand=Plus/Plus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGC-GAGTCAAAATGATAACATCGCC 59 ||||||||||||||||||||||| ||||||||| ||| ||||| || |||||| | Sbjct 13993919 GAACCCAAAGACTTTGATTTCTCATAAGGTGCC-AGCGGAGTCCTAAAAGCAACATCCGC 13993977 Query 60 CGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 ||||||| |||||||| ||||| |||| |||||| |||||||||| ||||||||||| Sbjct 13993978 TGATCCCTGGTCGGCATCGTTTATGGTTGAGACTAGGACGGTATCTAATCGTCTTCGA 13994035 Score = 111 bits (122), Expect = 9e-23 Identities = 97/118 (82%), Gaps = 2/118 (2%) Strand=Plus/Minus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGA-GTCAAAATGATAACATCGCC 59 ||||||||||||||||||||||| ||||||||| ||||| ||| || ||||||| Sbjct 9192071 GAACCCAAAGACTTTGATTTCTCATAAGGTGCC-AGCGAAGTCCTAAAAGTAACATCCGT 9192013 Query 60 CGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 ||||||| |||| || ||||| |||| | |||| |||||||||| ||||||||||| Sbjct 9192012 TGATCCCTGGTCGACAACGTTTATGGTTGAAACTAGGACGGTATCTAATCGTCTTCGA 9191955 >seq50 Length=345246 Score = 123 bits (136), Expect = 1e-26 Identities = 102/119 (86%), Gaps = 4/119 (3%) Strand=Plus/Minus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCG-AGTCAAAATGATAACAT-CGC 58 ||||||||||||||||||||||| ||||||||| |||| |||| || ||||| ||| Sbjct 2361 GAACCCAAAGACTTTGATTTCTCATAAGGTGCC-AGCGGAGTCCTAAAAGCAACATTCGC 2303 Query 59 CCGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 | |||||| |||||||| ||||| |||| |||||| |||||||||||||||||||||| Sbjct 2302 TC-ATCCCTGGTCGGCATCGTTTATGGTTGAGACTAGGACGGTATCTGATCGTCTTCGA 2245 >seq175 Length=221108 Score = 120 bits (132), Expect = 2e-25 Identities = 99/118 (84%), Gaps = 2/118 (2%) Strand=Plus/Plus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGC-GAGTCAAAATGATAACATCGCC 59 ||||||||||||||||||||||| ||||||||| ||| || || || |||||| | Sbjct 12978 GAACCCAAAGACTTTGATTTCTCATAAGGTGCC-AGCGGACTCCTAACAGCAACATCCGC 13036 Query 60 CGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 ||||||| |||||||| ||||| |||| |||||| ||||| |||||||||||||||| Sbjct 13037 TGATCCCTGGTCGGCATCGTTTATGGTTGAGACTAGGACGGGATCTGATCGTCTTCGA 13094 >seq9 Length=31747250 Score = 113 bits (124), Expect = 3e-23 Identities = 95/117 (81%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 ||||||||||||||||||||||| ||||||| | | ||||| || |||||| | Sbjct 25144772 GAACCCAAAGACTTTGATTTCTCATAAGGTGTCAACGGAGTCCTAAAAGCAACATCCGCT 25144713 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 ||||||| |||| ||| ||||| |||| ||||| ||||||||||||||||||| || Sbjct 25144712 GATCCCTGGTCGACATCGTTTATGGTTGAGACTTGGACGGTATCTGATCGTCTTTGA 25144656 >seq4 Length=34671004 Score = 86.0 bits (94), Expect = 3e-15 Identities = 59/67 (88%), Gaps = 0/67 (0%) Strand=Plus/Plus Query 51 AACATCGCCCGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCG 110 |||||| | ||||||| |||||||| ||||| |||| |||||| ||||||||||||||| Sbjct 14795820 AACATCCGCTGATCCCTGGTCGGCATCGTTTATGGTTGAGACTAGGACGGTATCTGATCG 14795879 Query 111 TCTTCGA 117 ||||||| Sbjct 14795880 TCTTCGA 14795886 >seq170 Length=248560 Score = 78.8 bits (86), Expect = 5e-13 Identities = 89/117 (76%), Gaps = 2/117 (2%) Strand=Plus/Plus Query 2 AACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGC-GAGTCAAAATGATAACATCGCCC 60 || ||||||||||||||||||| ||||||| | ||| |||||| || ||||| | Sbjct 219877 AATCCAAAGACTTTGATTTCTCATAAGGTGTC-AGCGGAGTCATAAAAGTAACACCCATT 219935 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 |||| | ||||||| |||| |||| |||||| || | ||||| || ||||| || Sbjct 219936 AATCCATGGTCGGCACCATTTATGGTTGAGACTAGGATGATATCTAATAGTCTTTGA 219992 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 278302451250