Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vigna_20radiata_20var._20radiata_20[refseq_20GCF_5F000741045.1_20201 5-10-28] 2,499 sequences; 463,637,892 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq2210 205 1e-50 seq1780 163 4e-38 seq2126 113 7e-23 >seq2210 Length=469383 Score = 205 bits (226), Expect = 1e-50 Identities = 122/125 (98%), Gaps = 2/125 (2%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| | Sbjct 9486 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTT-ATGACTCGCGCTTACTAGGAATT-C 9429 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 120 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 9428 CTCGTTGAAGACCAACACTTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 9369 Query 121 CCCGG 125 ||||| Sbjct 9368 CCCGG 9364 >seq1780 Length=2251 Score = 163 bits (180), Expect = 4e-38 Identities = 170/217 (78%), Gaps = 6/217 (3%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| |||| ||||| || ||||||||| |||||| |||||| | Sbjct 2040 GTACAAAGGGCAGGGACGTAATCAATGCGAG-TTAATGACTCGCACTTACTGGGAATT-C 2097 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATT- 119 | ||| | | |||| || || | | ||||| | || || | |||| | || Sbjct 2098 CAGGTTCATGTG-AACAGTTTCAGTTCACAATCCCAAGCAAGAAGGTGGTTCAGCGGTTT 2156 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 |||||||||| |||||| ||| ||| || ||||| | ||| |||||||||||||| Sbjct 2157 ACCCGGACCTCTCGGCCTAGGAAATACAC--GTTGATACCTTCATTGTAGCGCGCGTGCA 2214 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTG 216 |||||| |||||||||||||||||||||||||||||| Sbjct 2215 GCCCAGGACATCTAAGGGCATCACAGACCTGTTATTG 2251 >seq2126 Length=2451 Score = 113 bits (124), Expect = 7e-23 Identities = 161/219 (74%), Gaps = 6/219 (3%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||| || || |||||| || |||||||||| |||| |||||| | Sbjct 1788 GTACAAAGGGCAGGGACTTAATCGCCGCGAGGTT-ATGACTCGCGACTACTGGGAATT-C 1731 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACG-ATGAAATTTCAAAGATT 119 |||||| | ||||||||||| | |||| |||| | | ||| | || Sbjct 1730 CTCGTTCGCGGGGAACAATTGCAAGCCCCGGTCCCTTCCACGGACGGGATTCAGGGGGTT 1671 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATC-AGTGTAGCGCGCGTGC 178 ||| | || ||| | ||| | | || || ||| | | || | |||||| ||||||| Sbjct 1670 ACCGGTGTCTCTCGACGTAGGGTAGA-ACACGCTGA-TCCGTCCATTGTAGCACGCGTGC 1613 Query 179 GGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGC 217 |||||| |||||||||||||||||||||||||||| || Sbjct 1612 CGCCCAGGACATCTAAGGGCATCACAGACCTGTTATCGC 1574 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751981794785