Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vigna_20radiata_20var._20radiata_20[refseq_20GCF_5F000741045.1_20201 5-10-28] 2,499 sequences; 463,637,892 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq1658 237 7e-60 seq9 149 3e-33 seq2042 147 9e-33 seq1780 138 5e-30 seq6 129 2e-27 seq1775 102 3e-19 >seq1658 Length=109054 Score = 237 bits (262), Expect = 7e-60 Identities = 226/283 (80%), Gaps = 7/283 (2%) Strand=Plus/Plus Query 405 CGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTGTC-A 463 |||||||||||| ||||||||||||||||||| |||| | ||||||| |||| | Sbjct 922 CGGCCCGTCTTGAAACACGGACCAAGGAGTCTGACATGTGTGCGAGTCAACAGGTGAGTA 981 Query 464 AACCCGTGCG-CGTAATGAAAGTGAACGGAGGTGGGAACCCGT-GAGGGT-GCACCATCG 520 ||||||| | ||||| ||| ||| || ||||| ||| | | |||| ||||| || Sbjct 982 AACCCGTAAGGCGTAAGGAAGCTGATTGG---TGGGATCCCCTTGTGGGTTGCACCGCCG 1038 Query 521 ACCGATCCTGATGTCTTCGGATGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGA 580 ||||| |||||| | | || || || |||| |||||||| |||| ||||||||||||| Sbjct 1039 ACCGACCCTGATCTTCTGTGAAGGGTTCGAGTGAGAGCATACCTGTCGGGACCCGAAAGA 1098 Query 581 TGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGG 640 ||||||||||||||||| ||| ||||||||||||||||||||||||||| ||||| | Sbjct 1099 TGGTGAACTATGCCTGAGCGGGGCGAAGCCAGAGGAAACTCTGGTGGAGGCCCGCAGTGA 1158 Query 641 TTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 | | | ||||||||||| ||||| | ||||| |||||||||| Sbjct 1159 TACCGACGTGCAAATCGTTCGTCTGACTTGGGCATAGGGGCGA 1201 Score = 167 bits (184), Expect = 1e-38 Identities = 136/165 (82%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 35 TCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGC 94 ||| ||||||| |||||||||||||||||| | || ||| |||||||| | || || || Sbjct 537 TCGGCGAGTCGGGTTGTTTGGGAATGCAGCCCCAATCGGGCGGTAAATTCCGTCCAAGGC 596 Query 95 TAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTT 154 |||||| |||| |||||||||||||| ||||||| | || ||||||||||||| |||| Sbjct 597 TAAATACTGGCGAGAGACCGATAGCGAACAAGTACCGGGAGGGAAAGATGAAAAGGACTT 656 Query 155 TGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199 || ||||||||| ||| || | ||||||||| | ||||||||| Sbjct 657 TGAAAAGAGAGTCAAAGAGTGCTTGAAATTGTCGGGAGGGAAGCG 701 >seq9 Length=21008463 Score = 149 bits (164), Expect = 3e-33 Identities = 181/241 (75%), Gaps = 12/241 (5%) Strand=Plus/Minus Query 406 GGCCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTGTC-AA 464 ||||| ||||| ||||||||||||||||| | |||| | ||||||| ||||| || Sbjct 46854 GGCCCATCTTGAAACACGGACCAAGGAGTTTGACATGTGTGCGAGTCAACGGGTGAGTAA 46795 Query 465 ACCCGTGCG-CGTAATGAAAGTGAACGGAGGTGGGAACCCGT-GAGGGT-GCACCATCGA 521 |||||| | ||||| ||| ||| || ||||| ||| | | |||| ||||| || Sbjct 46794 ACCCGTAAGGCGTAAGGAAGCTGATTGG---TGGGATCCCCTTGTGGGTTGCACCGCTGA 46738 Query 522 CCGATCCTGATGTCTTCGGATGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGAT 581 | | ||| | | || || | ||| |||||||| ||||| |||| |||||||| Sbjct 46737 CTAACCCTTCTAT-----GAAGGGCTCAAGTGAGAGCATATCTGTTAGGACTCGAAAGAT 46683 Query 582 GGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGT 641 |||||||||||||||| | ||| ||||| ||||||||||||||| ||||| |||| || | Sbjct 46682 GGTGAACTATGCCTGAGTGGGGCGAAGCTAGAGGAAACTCTGGTAGAGGCCCGCATCGAT 46623 Query 642 T 642 | Sbjct 46622 T 46622 >seq2042 Length=363320 Score = 147 bits (162), Expect = 9e-33 Identities = 154/197 (78%), Gaps = 7/197 (4%) Strand=Plus/Minus Query 405 CGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTGTC-A 463 || ||||||||| ||||||||||||||||||| |||| | ||||||| ||||| | Sbjct 288304 CGACCCGTCTTGAAACACGGACCAAGGAGTCTGACATGTGTGCGAGTCAACGGGTGAGTA 288245 Query 464 AACCCGTGCG-CGTAATGAAAGTGAACGGAGGTGGGAACCCGT-GAGGGT-GCACCATCG 520 ||||||| | ||||| ||| ||| || ||||| ||| | | |||| ||||| || Sbjct 288244 AACCCGTAAGGCGTAAGGAAGCTGATTGG---TGGGATCCCNTTGTGGGTTGCACCGCCG 288188 Query 521 ACCGATCCTGATGTCTTCGGATGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGA 580 ||||| |||||| | | || || || ||| |||||||| |||| ||||||||||||| Sbjct 288187 ACCGACCCTGATCTTCTGTGAAGGGTTCNAGTGAGAGCATACCTGTCGGGACCCGAAAGA 288128 Query 581 TGGTGAACTATGCCTGA 597 ||||||||||||||||| Sbjct 288127 TGGTGAACTATGCCTGA 288111 >seq1780 Length=2251 Score = 138 bits (152), Expect = 5e-30 Identities = 108/129 (84%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 555 GAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAG 614 ||||||| || || |||||||||||||||||||||| ||||| || |||||||| Sbjct 168 GAGCATACATGCTGTGACCCGAAAGATGGTGAACTATACCTGATCAGATCGAAGCCAGGA 109 Query 615 GAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTA 674 |||| ||||||||||| ||| | | |||||| ||||||||||||| |||| | ||||||| Sbjct 108 GAAATTCTGGTGGAGGATCGAAACAGTTCTGACGTGCAAATCGATTGTCAGAATTGGGTA 49 Query 675 TAGGGGCGA 683 ||||||||| Sbjct 48 TAGGGGCGA 40 Score = 127 bits (140), Expect = 9e-27 Identities = 116/144 (81%), Gaps = 2/144 (1%) Strand=Plus/Minus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| |||| ||| | |||||| |||| | || |||||| | | ||||| ||||||| Sbjct 863 GAGTCGTGTTGCTTGATAGTGCAGCACTAAGTTGGTGGTAAACTCCATCTAAGGCTAAAT 804 Query 100 ATTGGCCAGA-GACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGA 158 || | ||| | ||||||||||| ||||||| |||| ||||| ||||||||||| || | Sbjct 803 AT-GACCACAAGACCGATAGCGAACAAGTACCGTGAGGGAAAGTTGAAAAGCACTCTGAA 745 Query 159 AAGAGAGTTAAAAAGCACGTGAAA 182 ||||||||||| || |||||||| Sbjct 744 TAGAGAGTTAAATAGTACGTGAAA 721 >seq6 Length=37436759 Score = 129 bits (142), Expect = 2e-27 Identities = 98/116 (84%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 568 GGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGG 627 |||| ||||||||||||||||||||||||| | | |||| |||||||||||||||||| Sbjct 7747635 GGGATCCGAAAGATGGTGAACTATGCCTGAGCGGAGCGAAGTCAGAGGAAACTCTGGTGG 7747694 Query 628 AGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 | || ||||||| | ||| ||| ||||||| ||||| | |||||||||| ||||| Sbjct 7747695 AAGCCCGCAGCGATACTGACGTACAAATCGTTCGTCTGACTTGGGTATAGAGGCGA 7747750 Score = 104 bits (114), Expect = 1e-19 Identities = 115/151 (76%), Gaps = 3/151 (2%) Strand=Plus/Plus Query 35 TCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGC 94 || || |||||||||||||| | ||| ||||| || || ||||||||| || || || Sbjct 28806080 TCAACAAGTCGAGTTGTTTGTGCATGTAGCTCCAATCGGACAGTAAATTTCGTCCAAGGC 28806139 Query 95 TAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGA-TGAAAAGCACT 153 |||||| | | ||||| ||||||| ||||||| | || |||||| | ||||| ||| Sbjct 28806140 TAAATACTAGTGAGAGATCGATAGCAAACAAGTATCGCGAGAGAAAGATTAAAAAGGACT 28806199 Query 154 TTGGAAAGAGAGTTAAAAAGCACGTGAAATT 184 ||| || ||||| ||| || || ||||||| Sbjct 28806200 TTG--AAAAGAGTAAAAGAGTACTTGAAATT 28806228 >seq1775 Length=1307 Score = 102 bits (112), Expect = 3e-19 Identities = 76/89 (85%), Gaps = 0/89 (0%) Strand=Plus/Minus Query 569 GGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGA 628 |||||||||||||||||||||||||| | ||| ||| |||| |||||| |||| ||| Sbjct 89 GGACCCGAAAGATGGTGAACTATGCCCGGCCAGGACGAAACCAGGGGAAACCCTGGCGGA 30 Query 629 GGCTCGCAGCGGTTCTGGCGTGCAAATCG 657 || ||||||||||||| ||||||||||| Sbjct 29 GGTCCGCAGCGGTTCTGACGTGCAAATCG 1 Score = 102 bits (112), Expect = 3e-19 Identities = 109/143 (76%), Gaps = 1/143 (1%) Strand=Plus/Minus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| || | |||| | |||||| |||| || |||||| | | ||||| |||||| Sbjct 881 GAGTCGGGTCGCTTGGTAGTGCAGCCCTAAGAGGT-GGTAAACTCCATCTAAGGCTAAAC 823 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 || | | ||||||||||| | ||||||| || ||||| ||||||| ||| || | Sbjct 822 ATCGCCGCGAGACCGATAGAGGACAAGTACCGTTCGGGAAAGTTGAAAAGGACTCTGCAG 763 Query 160 AGAGAGTTAAAAAGCACGTGAAA 182 ||||||||||| || |||||||| Sbjct 762 AGAGAGTTAAAGAGTACGTGAAA 740 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079946396450