Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vigna_20radiata_20var._20radiata_20[refseq_20GCF_5F000741045.1_20201 5-10-28] 2,499 sequences; 463,637,892 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq2126 161 2e-37 seq1348 96.9 6e-18 seq1780 89.7 8e-16 seq8 80.6 4e-13 >seq2126 Length=2451 Score = 161 bits (178), Expect = 2e-37 Identities = 103/112 (92%), Gaps = 0/112 (0%) Strand=Plus/Minus Query 147 TAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAA 206 ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1273 TAGCAGGACGGGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAA 1214 Query 207 GAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 ||||||||||||||||||||||| ||||| ||||||| || |||||||||| Sbjct 1213 GAACGGCCATGCACCACCACCCACCGAATCGAGAAAGAACTCTCAATCTGTC 1162 Score = 82.4 bits (90), Expect = 1e-13 Identities = 56/62 (90%), Gaps = 1/62 (2%) Strand=Plus/Minus Query 12 TCCGTC-AGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATT 70 |||||| | |||||| ||||||| |||||| |||||||||||||||||||||||||||| Sbjct 1635 TCCGTCCATTGTAGCACGCGTGCCGCCCAGGACATCTAAGGGCATCACAGACCTGTTATC 1576 Query 71 GC 72 || Sbjct 1575 GC 1574 >seq1348 Length=554905 Score = 96.9 bits (106), Expect = 6e-18 Identities = 91/116 (78%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 143 TATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAA 202 |||||||||| | || | | ||| |||| || |||||| |||||||| ||||||| | Sbjct 183682 TATTTAGCAGACTGAGATATTGTTTGTTAACGAAATTAATTAGACAAATTGCTCCACCTA 183623 Query 203 CTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 | ||||||| |||||| |||||| ||| ||||||||||||| || | | | |||| Sbjct 183622 CATAGAACGGTCATGCATCACCACTCATTGAATCAAGAAAGACCTCTTAGTTTGTC 183567 >seq1780 Length=2251 Score = 89.7 bits (98), Expect = 8e-16 Identities = 55/59 (93%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 13 CCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTG 71 || ||| |||||||||||||| |||||| |||||||||||||||||||||||||||||| Sbjct 2193 CCTTCATTGTAGCGCGCGTGCAGCCCAGGACATCTAAGGGCATCACAGACCTGTTATTG 2251 >seq8 Length=45727239 Score = 80.6 bits (88), Expect = 4e-13 Identities = 61/72 (85%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 174 GGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGA 233 |||||| |||| | |||||||||||||||||||||| ||||||| |||||| | |||| Sbjct 10551860 GGAATTGACCAAAAAAATCACTCCACCAACTAAGAATAACCATGCATCACCACTCTTAGA 10551919 Query 234 ATCAAGAAAGAG 245 || |||| |||| Sbjct 10551920 ATTAAGAGAGAG 10551931 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796780710219