Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vigna_20radiata_20var._20radiata_20[refseq_20GCF_5F000741045.1_20201 5-10-28] 2,499 sequences; 463,637,892 total letters Query= AAMG01001138.1 Length=202 Score E Sequences producing significant alignments: (Bits) Value seq1976 116 4e-24 seq2499 107 2e-21 seq2498 107 2e-21 seq1 107 2e-21 seq598 104 3e-20 seq11 87.8 2e-15 seq4 82.4 8e-14 >seq1976 Length=1322 Score = 116 bits (128), Expect = 4e-24 Identities = 111/146 (76%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 23 CGGGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTG 82 ||||||||| |||| || |||| || |||||||||| || | | ||||||| ||| Sbjct 1177 CGGGGTCTTACCGTCTAGCCGTTGGTACTCCGCATCTTCACGGAGAATTCAATTTCGCTG 1236 Query 83 AGCTCACGGTTGAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCC 142 ||| | ||||||| ||| |||||||||||||||||||||||||| Sbjct 1237 AGCATGTCCTGGAGACAGTGGGGAAGTCGTTACGCCATTCGTGCAGGTCGGAACTTACCC 1296 Query 143 GACAAGGAATTTCGCTACCTTAGGAC 168 |||||||||||||||||||||||||| Sbjct 1297 GACAAGGAATTTCGCTACCTTAGGAC 1322 >seq2499 Length=151271 Score = 107 bits (118), Expect = 2e-21 Identities = 113/150 (75%), Gaps = 2/150 (1%) Strand=Plus/Minus Query 25 GGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTGAG 84 |||||||| |||| || |||| || |||||||||| || | | ||||||| ||| Sbjct 104291 GGGTCTTTCTGTCCAGGTGCAGGTAGTCCGCATCTTCACAGACATGTCTATTTCACCGAG 104232 Query 85 CTCACGGTT-GAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCCG 143 || | | ||||||| ||| || ||||||| |||||||||||||||| Sbjct 104231 -TCTCTCTCCGAGACAGTGCCCAGATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCG 104173 Query 144 ACAAGGAATTTCGCTACCTTAGGACCGTTA 173 |||||||||||||||||||||||||||||| Sbjct 104172 ACAAGGAATTTCGCTACCTTAGGACCGTTA 104143 Score = 107 bits (118), Expect = 2e-21 Identities = 113/150 (75%), Gaps = 2/150 (1%) Strand=Plus/Plus Query 25 GGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTGAG 84 |||||||| |||| || |||| || |||||||||| || | | ||||||| ||| Sbjct 127879 GGGTCTTTCTGTCCAGGTGCAGGTAGTCCGCATCTTCACAGACATGTCTATTTCACCGAG 127938 Query 85 CTCACGGTT-GAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCCG 143 || | | ||||||| ||| || ||||||| |||||||||||||||| Sbjct 127939 -TCTCTCTCCGAGACAGTGCCCAGATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCG 127997 Query 144 ACAAGGAATTTCGCTACCTTAGGACCGTTA 173 |||||||||||||||||||||||||||||| Sbjct 127998 ACAAGGAATTTCGCTACCTTAGGACCGTTA 128027 >seq2498 Length=401262 Score = 107 bits (118), Expect = 2e-21 Identities = 112/151 (74%), Gaps = 0/151 (0%) Strand=Plus/Plus Query 23 CGGGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTG 82 ||||||||| |||| || |||| || |||||||||| || | | ||||||||| | Sbjct 150220 CGGGGTCTTACCGTCTAGCCGTTGGTACTCCGCATCTTCACGGAGAATTCAATTTCACCG 150279 Query 83 AGCTCACGGTTGAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCC 142 | || | ||||||| |||||||||||||||||||| ||||| | Sbjct 150280 GGTCCATGTCGGAGACAGCGGGGCAGTCGTTACACCATTCGTGCAGGTCGCTACTTATGC 150339 Query 143 GACAAGGAATTTCGCTACCTTAGGACCGTTA 173 |||||||||||||||||||||||||| |||| Sbjct 150340 GACAAGGAATTTCGCTACCTTAGGACAGTTA 150370 >seq1 Length=36501346 Score = 107 bits (118), Expect = 2e-21 Identities = 113/150 (75%), Gaps = 2/150 (1%) Strand=Plus/Plus Query 25 GGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTGAG 84 |||||||| |||| || |||| || |||||||||| || | | ||||||| ||| Sbjct 13826974 GGGTCTTTCTGTCCAGGTGCAGGTAGTCCGCATCTTCACAGACATGTCTATTTCACCGAG 13827033 Query 85 CTCACGGTT-GAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCCG 143 || | | ||||||| ||| || ||||||| |||||||||||||||| Sbjct 13827034 -TCTCTCTCCGAGACAGTGCCCAGATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCG 13827092 Query 144 ACAAGGAATTTCGCTACCTTAGGACCGTTA 173 |||||||||||||||||||||||||||||| Sbjct 13827093 ACAAGGAATTTCGCTACCTTAGGACCGTTA 13827122 Score = 78.8 bits (86), Expect = 1e-12 Identities = 54/61 (89%), Gaps = 0/61 (0%) Strand=Plus/Minus Query 113 TACACCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTT 172 ||| || || |||| |||| |||||||||||| |||||||||| |||||||||||||||| Sbjct 4030425 TACGCCTTTTGTGCGGGTCAGAACTTACCCGATAAGGAATTTCACTACCTTAGGACCGTT 4030366 Query 173 A 173 | Sbjct 4030365 A 4030365 >seq598 Length=1678608 Score = 104 bits (114), Expect = 3e-20 Identities = 106/140 (76%), Gaps = 2/140 (1%) Strand=Plus/Plus Query 35 GTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTGAGCTCACGGTT- 93 |||| | || |||| || |||||||||| || | | ||||||| ||| || | | Sbjct 1646964 GTCCAAGTGCAGGTAGTCCGCATCTTCACAGACATGTCTATTTCACCGAG-TCTCTCTCC 1647022 Query 94 GAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATT 153 ||||||| ||| || ||||||| |||||||||||||||||||||||||| Sbjct 1647023 GAGACAGTGCCCAGATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATT 1647082 Query 154 TCGCTACCTTAGGACCGTTA 173 |||||||||||||||||||| Sbjct 1647083 TCGCTACCTTAGGACCGTTA 1647102 >seq11 Length=19732206 Score = 87.8 bits (96), Expect = 2e-15 Identities = 56/61 (92%), Gaps = 0/61 (0%) Strand=Plus/Minus Query 113 TACACCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTT 172 ||| || |||||||| |||| ||||||||| ||||||||||||||||||||||||||||| Sbjct 10737396 TACGCCTTTCGTGCATGTCGAAACTTACCCCACAAGGAATTTCGCTACCTTAGGACCGTT 10737337 Query 173 A 173 | Sbjct 10737336 A 10737336 >seq4 Length=20812224 Score = 82.4 bits (90), Expect = 8e-14 Identities = 47/48 (98%), Gaps = 0/48 (0%) Strand=Plus/Plus Query 120 TTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGA 167 ||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 9226281 TTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGA 9226328 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547186752801