Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vigna_20radiata_20var._20radiata_20[refseq_20GCF_5F000741045.1_20201 5-10-28] 2,499 sequences; 463,637,892 total letters Query= AAMG01001178.1 Length=367 Score E Sequences producing significant alignments: (Bits) Value seq2499 221 3e-55 seq2498 206 6e-51 seq7 190 4e-46 seq9 178 3e-42 seq1 114 3e-23 seq3 78.8 2e-12 >seq2499 Length=151271 Score = 221 bits (244), Expect = 3e-55 Identities = 239/310 (77%), Gaps = 20/310 (6%) Strand=Plus/Minus Query 29 CACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTC 88 |||||||||||| || |||||||||||||||||| || |||||||||||||||||| Sbjct 98660 CACGCGGCATTG-CTCCGTCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTC 98602 Query 89 CCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTT 148 |||||||||||||| |||||||||||| |||||||| |||||||||||||| |||||| | Sbjct 98601 CCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGACCAGCT 98542 Query 149 ACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATCCGAC-CTAGGCTCA 207 || |||| |||||||||| ||| ||| ||||||||||||||||||| ||| | || | | Sbjct 98541 ACTGATCATCGCCTTGGTAAGCTATTGCCTCACCAACTAGCTAATCAGACGCGAGCCCCT 98482 Query 208 TCTGATAGCGCAAGGCCCGAAGGTCCCCTGCTTTCTCCCGTAGGACGTATGCGGTATTAG 267 || || ||| || ||| |||| | | | | | || | |||||||| Sbjct 98481 CCT-----CG---GGC-----GGATTCCTCCTTTTGCTCCTCAG-CCTACGGGGTATTAG 98436 Query 268 CGTCCGTTTCCGAACGTTATCCCCCACTACCA--GGCAGATTCCTAGGCATTACTCACCC 325 | |||||||| ||| | ||| || ||| || || ||| || || |||||||||| Sbjct 98435 CAGCCGTTTCCAGCTGTTGTTCCC--CTCCCAAGGGTAGGTTCTTACGCGTTACTCACCC 98378 Query 326 GTCCGCCGCT 335 ||||||| || Sbjct 98377 GTCCGCCACT 98368 Score = 221 bits (244), Expect = 3e-55 Identities = 239/310 (77%), Gaps = 20/310 (6%) Strand=Plus/Plus Query 29 CACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTC 88 |||||||||||| || |||||||||||||||||| || |||||||||||||||||| Sbjct 133510 CACGCGGCATTG-CTCCGTCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTC 133568 Query 89 CCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTT 148 |||||||||||||| |||||||||||| |||||||| |||||||||||||| |||||| | Sbjct 133569 CCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGACCAGCT 133628 Query 149 ACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATCCGAC-CTAGGCTCA 207 || |||| |||||||||| ||| ||| ||||||||||||||||||| ||| | || | | Sbjct 133629 ACTGATCATCGCCTTGGTAAGCTATTGCCTCACCAACTAGCTAATCAGACGCGAGCCCCT 133688 Query 208 TCTGATAGCGCAAGGCCCGAAGGTCCCCTGCTTTCTCCCGTAGGACGTATGCGGTATTAG 267 || || ||| || ||| |||| | | | | | || | |||||||| Sbjct 133689 CCT-----CG---GGC-----GGATTCCTCCTTTTGCTCCTCAG-CCTACGGGGTATTAG 133734 Query 268 CGTCCGTTTCCGAACGTTATCCCCCACTACCA--GGCAGATTCCTAGGCATTACTCACCC 325 | |||||||| ||| | ||| || ||| || || ||| || || |||||||||| Sbjct 133735 CAGCCGTTTCCAGCTGTTGTTCCC--CTCCCAAGGGTAGGTTCTTACGCGTTACTCACCC 133792 Query 326 GTCCGCCGCT 335 ||||||| || Sbjct 133793 GTCCGCCACT 133802 >seq2498 Length=401262 Score = 206 bits (228), Expect = 6e-51 Identities = 180/220 (82%), Gaps = 4/220 (2%) Strand=Plus/Plus Query 1 CTTTACAATCCGAA--GACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGC 58 |||||||| | | | | ||||||| ||| |||||| |||| ||||||| ||||||||| Sbjct 124959 CTTTACAAGCGGCATTGCCCTTCTT-CACTCACGCGATATTG-CTGGATCGGGCTTTCGC 125016 Query 59 CCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCC 118 ||||||||||| |||||||||||||||| ||||| |||||| || |||||||||||| || Sbjct 125017 CCATTGTCCAAGATTCCCCACTGCTGCCCCCCGTGGGAGTCCGGGCCGTGTCTCAGTCCC 125076 Query 119 AGTGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCT 178 |||||| |||||||||| ||||||| || | ||| | | |||||| |||| |||||| Sbjct 125077 AGTGTGGCTGATCATCCGAAAAGACCAGCTAAGCATCATTGGCTTGGTCAGCCTTTACCT 125136 Query 179 CACCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGC 218 |||||||| ||||| | || ||||||||| | ||||| Sbjct 125137 GACCAACTACCTAATACTACGCAGGCTCATCAAACAGCGC 125176 >seq7 Length=55601358 Score = 190 bits (210), Expect = 4e-46 Identities = 145/170 (85%), Gaps = 1/170 (1%) Strand=Plus/Plus Query 29 CACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTC 88 |||||| ||||| || ||||||||||||| |||| || |||||||||| |||||| Sbjct 32590186 CACGCGACATTG-CTCCGTCAGGCTTTCGCCTATTGCGGAAAATTCCCCACTATTGCCTC 32590244 Query 89 CCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTT 148 | || ||||||||| |||||||||||| |||||||| |||||||||||||| |||||| | Sbjct 32590245 CTGTGGGAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGACCAGCT 32590304 Query 149 ACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATCCGAC 198 || |||| |||||||||| ||| ||| ||||||||||||||||||| ||| Sbjct 32590305 ACTGATCATCGCCTTGGTAAGCTATTGCCTCACCAACTAGCTAATCAGAC 32590354 Score = 163 bits (180), Expect = 6e-38 Identities = 139/170 (82%), Gaps = 1/170 (1%) Strand=Plus/Minus Query 29 CACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTC 88 |||||| ||||| || ||||| |||||| ||||| || |||||||||| |||| || Sbjct 32534501 CACGCGACATTG-CTCCGTCAGGTTTTCGCTCATTGCGGAAAATTCCCCACTACTGCTTC 32534443 Query 89 CCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTT 148 || ||||||||||| | ||||||||| |||||||| ||| | |||||||||||||| | Sbjct 32534442 CCATAGGAGTCTGGGCTATGTCTCAGTCCCAGTGTGGCTGCTTATCCTCTCAGACCAACT 32534383 Query 149 ACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATCCGAC 198 || |||| | |||||||| ||| |||| |||||||||||| ||||| ||| Sbjct 32534382 ACTGATCATTGCCTTGGTAAGCTATTAGCTCACCAACTAGTTAATCAGAC 32534333 >seq9 Length=21008463 Score = 178 bits (196), Expect = 3e-42 Identities = 149/181 (82%), Gaps = 5/181 (3%) Strand=Plus/Plus Query 18 CTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCC 77 || |||||||| ||||||| || ||||| |||| |||||| || ||||||| Sbjct 8339345 CTACTTTCACAA----GGCATTG-CTCCGTCAGGGTTTCATCCATTGCGGAAAATTCCCC 8339399 Query 78 ACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTC 137 ||||||||||||||||| ||||||| ||||||||||| | ||||||||||||||| ||| Sbjct 8339400 ACTGCTGCCTCCCGTAGAAGTCTGGGTCGTGTCTCAGTCCTAGTGTGACTGATCATTCTC 8339459 Query 138 TCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATCCGA 197 || |||||| ||| |||| || ||||||| ||| ||| ||||||||||||||||||| || Sbjct 8339460 TCGGACCAGCTACTGATCATCACCTTGGTAAGCTATTCCCTCACCAACTAGCTAATCAGA 8339519 Query 198 C 198 | Sbjct 8339520 C 8339520 >seq1 Length=36501346 Score = 114 bits (126), Expect = 3e-23 Identities = 83/95 (87%), Gaps = 1/95 (1%) Strand=Plus/Plus Query 29 CACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTC 88 |||||| ||||| || ||| |||||||||||||| || |||||||||||||||||| Sbjct 34744903 CACGCGACATTG-CTCTGTCAAGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTC 34744961 Query 89 CCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGT 123 |||||||||||||| |||||||||||| ||||||| Sbjct 34744962 CCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGT 34744996 >seq3 Length=12950713 Score = 78.8 bits (86), Expect = 2e-12 Identities = 78/99 (79%), Gaps = 8/99 (8%) Strand=Plus/Minus Query 10 CCGAAGACCTTCT---TTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTC 66 ||| | ||||||| ||||||| |||||| || |||||||||||||||||| Sbjct 3642584 CCGGAAACCTTCTACCTTCACAC----GGCATTA-CTCCGTCAGGCTTTCGCCCATTGCG 3642530 Query 67 CAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACC 105 || ||| |||||||||||||||||||||||| ||| || Sbjct 3642529 GAAAATTNCCCACTGCTGCCTCCCGTAGGAGTTTGGGCC 3642491 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1071973210720