Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vigna_20radiata_20var._20radiata_20[refseq_20GCF_5F000741045.1_20201 5-10-28] 2,499 sequences; 463,637,892 total letters Query= AAMG01001213.1 Length=600 Score E Sequences producing significant alignments: (Bits) Value seq2122 367 5e-99 seq2499 257 6e-66 seq2498 159 1e-36 seq551 154 5e-35 seq8 147 8e-33 seq1156 127 7e-27 seq40 102 3e-19 seq1780 77.0 1e-11 >seq2122 Length=2452 Score = 367 bits (406), Expect = 5e-99 Identities = 428/566 (76%), Gaps = 19/566 (3%) Strand=Plus/Plus Query 36 CCGCGCTCTCACTTCCCGGCATTCGGAGTTTGGTTGATTTCGGTAAG-CTTGTGGGCCCC 94 |||| || | |||| | || |||||||||||| | || |||||| | | |||| Sbjct 209 CCGCACTGT-ACTTGCAGGTATTCGGAGTTTGCCATAGTTTGGTAAGTCGCCATGACCCC 267 Query 95 CTAGACCATC-CAGTGCTCTACCTCCGGGAAGAAACACGCGACGCTGCACCTAAATGCAT 153 |||| | || |||||||||||| || | | | || | |||| || |||||||| | Sbjct 268 CTAG-CTATAACAGTGCTCTACCCCCTGCA-GTAATATGCGAGGCACTACCTAAATAGTT 325 Query 154 TTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCACCCCTATCCACAGGTCAT 213 ||||| ||||||||||||| | | |||| || ||||||||||||||||||||| |||| Sbjct 326 TTCGGAGAGAACCAGCTATTTCCAGATTTGTTTAGCCTTTCACCCCTATCCACAGCTCAT 385 Query 214 CCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGGTCTTACCCGCGCTTCAAC 273 ||||| | |||||||| | |||||||||||||||||| || ||||| ||||||| Sbjct 386 CCCCTAATTTTTCAACATTAGTGGGTTCGGTCCTCCAGCACGTGTTACCGTGCCTTCAAC 445 Query 274 CTGCCCATGGATAGATCACTTCGCTTCGGGTCTTGATCGTGCCACTCATACGCCCTATTC 333 ||| |||||||||||||| | | ||||||||| | | || ||| | ||||||||||| Sbjct 446 CTGGCCATGGATAGATCATCTGGTTTCGGGTCTACACCCAGCGACTGA-ACGCCCTATTC 504 Query 334 GGACTCGCTTTCGCTACGGCTACCCCACACGGGTTAACCTCGCGACACAACGCAAACTCG 393 |||||||||||||||||| || ||| | | |||||| || || || || | || ||| Sbjct 505 GGACTCGCTTTCGCTACGCCTTCCCTATTC-GGTTAAGCTTGCCACTGAATG-TAAGTCG 562 Query 394 CAGGCTCATTCTTCAAAAGGCACGCCGTCACCTGGTACCTAAAAGGCACTTCAGCTCCGA 453 | | | |||| | ||||||| |||| ||||| || || ||| || ||||| | Sbjct 563 CTGACCCATTATACAAAAGGTACGCAGTCAC--GGAAC----AAG-----TCCGCTCCTA 611 Query 454 CGGATTGTAGGCACATGGTTTCAGGTACTATTTCACTCCCCGCCAGGGGTACTTTTCACC 513 | | ||||| ||| | ||||||||| |||||||||||||| | ||||| |||||| || Sbjct 612 CTGTTTGTATGCATACGGTTTCAGGATCTATTTCACTCCCCTTCCGGGGTTCTTTTCGCC 671 Query 514 TTTCCCTCACGGTACTTGTCCGCTATCGGTCACCAAGGAGTATTTAGGCTTAACGGGTGG 573 |||||||||||||||| || | |||||||||| |||||||||||| ||| || ||| Sbjct 672 TTTCCCTCACGGTACTGGTTCACTATCGGTCAGTCAGGAGTATTTAGCCTTGGAGGATGG 731 Query 574 TCCCGCCAGATTCACACGAAATTTCA 599 |||| ||| |||| || |||||| Sbjct 732 TCCCCCCATCTTCAAACAGGATTTCA 757 >seq2499 Length=151271 Score = 257 bits (284), Expect = 6e-66 Identities = 347/479 (72%), Gaps = 31/479 (6%) Strand=Plus/Minus Query 137 GCTGCACCTAAATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCAC 196 ||||| ||| || |||||||||||||||||||||| | | ||| || |||| |||||| Sbjct 103059 GCTGCGCCTCAACGCATTTCGGGGAGAACCAGCTAGCTCTGGGTTCGAGTGGCATTTCAC 103000 Query 197 CCCTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGGT 256 ||||| ||||| |||||| || | | |||||| | ||| ||||||| ||||||| || Sbjct 102999 CCCTAACCACAACTCATCCGCTGATTCTTCAACATCAGTCGGTTCGGACCTCCACTTAGT 102940 Query 257 CTTACCCGCGCTTCAACCTGCCCATGGATAGATCACTTCGCTTCGGGT-CTTGATC-GTG 314 | |||| |||||| |||| |||||||||||||| | ||||||| | | | | ||| Sbjct 102939 TTCACCCAAGCTTCATCCTGGTCATGGATAGATCACCCAGGTTCGGGTCCATAAGCAGTG 102880 Query 315 CCACTCATACGCCCTATTCGGACTCGCTTTCGCTACGGCTAC--------CCCACACGGG 366 || | ||||||| |||||||||||||||||||| | ||| Sbjct 102879 ACAAT----TGCCCTATGAAGACTCGCTTTCGCTACGGCTCCGGTGGTTTCCC------- 102831 Query 367 TTAACCTCGCGACACAACGCA-AACTCGCAGGCTCATTCTTCAAAAGGCACGCCGTCACC 425 |||||| || ||| | | | |||| |||||||||||||| |||||||| |||| Sbjct 102830 TTAACCAAGC--CACTGCCTATGAGTCGCCGGCTCATTCTTCAACAGGCACGCGGTCA-- 102775 Query 426 TGGTACCTAAAAGGCACTT-----CAGCTCCGACGGATTGTAGGCACATGGTTTCAGGTA 480 ||||| | | ||| | |||| || | ||| || | ||||||| || Sbjct 102774 GAGTACCGGACTGAGCCTTATAGCCTCCTCCCACTGCTTGGGAGCTTACGGTTTCATGTT 102715 Query 481 CTATTTCACTCCCCGCCAGGGGTACTTTTCACCTTTCCCTCACGGTACTTGTCCGCTATC 540 ||||||||||||||| ||||| ||||||||| ||||||||||||||| | | ||||| Sbjct 102714 CTATTTCACTCCCCGATGGGGGTTCTTTTCACCCTTCCCTCACGGTACTACTTCACTATC 102655 Query 541 GGTCACCAAGGAGTATTTAGGCTTAACGGGTGGTCCCGCCAGATTCACACGAAATTTCA 599 ||||||| |||||||||||| ||| |||||||| | |||||||||| ||| || Sbjct 102654 GGTCACCCAGGAGTATTTAGCCTTGCAAGGTGGTCCTTGCTGATTCACACGGGATTCCA 102596 Score = 257 bits (284), Expect = 6e-66 Identities = 347/479 (72%), Gaps = 31/479 (6%) Strand=Plus/Plus Query 137 GCTGCACCTAAATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCAC 196 ||||| ||| || |||||||||||||||||||||| | | ||| || |||| |||||| Sbjct 129111 GCTGCGCCTCAACGCATTTCGGGGAGAACCAGCTAGCTCTGGGTTCGAGTGGCATTTCAC 129170 Query 197 CCCTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGGT 256 ||||| ||||| |||||| || | | |||||| | ||| ||||||| ||||||| || Sbjct 129171 CCCTAACCACAACTCATCCGCTGATTCTTCAACATCAGTCGGTTCGGACCTCCACTTAGT 129230 Query 257 CTTACCCGCGCTTCAACCTGCCCATGGATAGATCACTTCGCTTCGGGT-CTTGATC-GTG 314 | |||| |||||| |||| |||||||||||||| | ||||||| | | | | ||| Sbjct 129231 TTCACCCAAGCTTCATCCTGGTCATGGATAGATCACCCAGGTTCGGGTCCATAAGCAGTG 129290 Query 315 CCACTCATACGCCCTATTCGGACTCGCTTTCGCTACGGCTAC--------CCCACACGGG 366 || | ||||||| |||||||||||||||||||| | ||| Sbjct 129291 ACAAT----TGCCCTATGAAGACTCGCTTTCGCTACGGCTCCGGTGGTTTCCC------- 129339 Query 367 TTAACCTCGCGACACAACGCA-AACTCGCAGGCTCATTCTTCAAAAGGCACGCCGTCACC 425 |||||| || ||| | | | |||| |||||||||||||| |||||||| |||| Sbjct 129340 TTAACCAAGC--CACTGCCTATGAGTCGCCGGCTCATTCTTCAACAGGCACGCGGTCA-- 129395 Query 426 TGGTACCTAAAAGGCACTT-----CAGCTCCGACGGATTGTAGGCACATGGTTTCAGGTA 480 ||||| | | ||| | |||| || | ||| || | ||||||| || Sbjct 129396 GAGTACCGGACTGAGCCTTATAGCCTCCTCCCACTGCTTGGGAGCTTACGGTTTCATGTT 129455 Query 481 CTATTTCACTCCCCGCCAGGGGTACTTTTCACCTTTCCCTCACGGTACTTGTCCGCTATC 540 ||||||||||||||| ||||| ||||||||| ||||||||||||||| | | ||||| Sbjct 129456 CTATTTCACTCCCCGATGGGGGTTCTTTTCACCCTTCCCTCACGGTACTACTTCACTATC 129515 Query 541 GGTCACCAAGGAGTATTTAGGCTTAACGGGTGGTCCCGCCAGATTCACACGAAATTTCA 599 ||||||| |||||||||||| ||| |||||||| | |||||||||| ||| || Sbjct 129516 GGTCACCCAGGAGTATTTAGCCTTGCAAGGTGGTCCTTGCTGATTCACACGGGATTCCA 129574 >seq2498 Length=401262 Score = 159 bits (176), Expect = 1e-36 Identities = 351/515 (68%), Gaps = 36/515 (7%) Strand=Plus/Plus Query 88 GGGCC-CCCTAGACCATCCAGTGCTCTACCTCCGGGAAGAAACACGCGACGCTGCACCTA 146 ||||| |||||| |||| ||||||||||||| || | ||| ||||| || || Sbjct 151539 GGGCCACCCTAGCCCATTGAGTGCTCTACCTCGGGCCATCGACATCATACGCTCTACTTA 151598 Query 147 AATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCACCCCTATCCAC 206 ||| |||||| ||| ||||||||||| | | ||| ||||||||||||||||| |||| Sbjct 151599 AATAGATTTCGCGGAAAACCAGCTATCTCCGATCTTGGTTGGCCTTTCACCCCTAGCCAC 151658 Query 207 AGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGGTCTTA-CCCGC 265 | ||||||||| | ||| | || || ||||||||||||||||| | | | | | | Sbjct 151659 AAGTCATCCCCGTATTTTGCCACATACGTGGGTTCGGTCCTCCAAGGCCTGTGAGAGCTC 151718 Query 266 GCTTCAACCTGCCCATGGATAGATCACTTCGCTTCGGGTCTTGATCGTGCCACTCATACG 325 ||||||||||| ||||| |||||| | | |||||||| || | | | | | Sbjct 151719 TCTTCAACCTGCTCATGGCTAGATCGATCGGTTTCGGGTC-AAATAGGAAGAACTAGAAG 151777 Query 326 CCCTATTCGGACTCGCTTTCGCTACGGCTACCCCACACGGGTTAACCTCGCGACACAACG 385 |||| ||| | || |||| || | || |||| | ||| | | Sbjct 151778 ----ATTCCACCTC---TGAAAGGCGCCTACACCTAATGGCTTAAGC-CGCTGTTC-CCA 151828 Query 386 CAAACTCGCAGGCTCATTCTTCAAAAGGCACGCCGTCA-CCTG-GTAC------CTA--- 434 ||||| | | ||| | ||||||| ||||||| | || || | ||| Sbjct 151829 TTTTCTCGCTGACCCATCATGCAAAAGGTACGCCGTTAGAGTGAGTGCGCTTTACTAAAT 151888 Query 435 -------AAAGGCACTTCAGCTC---CGACGGATTGTAGGCACATGGTTTCAGGT--ACT 482 |||||| | | ||||| |||| |||||| ||| | | |||||| || Sbjct 151889 CTCAAGTAAAGGCTC-TAAGCTCCTTCGACTGATTGTTCGCATCGGATCTCAGGTTCTCT 151947 Query 483 ATTTCACTCCCCGCCAGGGGTACTTTTCACCTTTCCCTCACGGTACTTGTCCGCTATCGG 542 ||| ||||||| |||| |||||||||||||||||||||||||||| ||||||||| Sbjct 151948 ATTGCACTCCCTAAATAGGGTTCTTTTCACCTTTCCCTCACGGTACTTGTACGCTATCGG 152007 Query 543 TCACCAAGGAGTATTTAGGCTTAACGGGTGGTCCC 577 ||| |||| || ||||||||| |||||||||| Sbjct 152008 TCATTGAGGAATACTTAGGCTTAGAGGGTGGTCCC 152042 >seq551 Length=1408 Score = 154 bits (170), Expect = 5e-35 Identities = 168/220 (76%), Gaps = 6/220 (3%) Strand=Plus/Plus Query 137 GCTGCACCTAAATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCAC 196 ||||| ||| || |||||||||||||||||||||| | | ||| || |||| |||||| Sbjct 1058 GCTGCGCCTCAACGCATTTCGGGGAGAACCAGCTAGCTCTGGGTTCGAGTGGCATTTCAC 1117 Query 197 CCCTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGGT 256 ||||| ||||| |||||| || | | |||||| | ||| ||||||| ||||||| || Sbjct 1118 CCCTAACCACAACTCATCCGCTGATTCTTCAACATCAGTCGGTTCGGACCTCCACTTAGT 1177 Query 257 CTTACCCGCGCTTCAACCTGCCCATGGATAGATCACTTCGCTTCGGGT-CTTGATC-GTG 314 | |||| |||||| |||| |||||||||||||| | ||||||| | | | | ||| Sbjct 1178 TTCACCCAAGCTTCATCCTGGTCATGGATAGATCACCCAGGTTCGGGTCCATAAGCAGTG 1237 Query 315 CCACTCATACGCCCTATTCGGACTCGCTTTCGCTACGGCT 354 || | ||||||| ||||||||||||||||| || Sbjct 1238 ACAAT----TGCCCTATAAAGACTCGCTTTCGCTACGACT 1273 >seq8 Length=45727239 Score = 147 bits (162), Expect = 8e-33 Identities = 258/371 (70%), Gaps = 23/371 (6%) Strand=Plus/Minus Query 137 GCTGCACCTAAATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCAC 196 ||||| ||| || ||||||| ||||||||||| || | | ||| || |||| |||||| Sbjct 1248840 GCTGCGCCTCAACGCATTTCAGGGAGAACCAGTTAGCTCTGGGTTCGAGTGGCATTTCAC 1248781 Query 197 CCCTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGGT 256 || || |||| |||||| || | | |||||| | ||| ||||||| ||||||| || Sbjct 1248780 CCTTAATCACAACTCATCCGCTAATTCTTCAACATCAGTCGGTTCGGACCTCCACTTAGT 1248721 Query 257 CTTACCCGCGCTTCAACCTGCCCATGGATAGATCACTTCGCTTCGGGT-CTTGATC-GTG 314 | |||| |||||| |||| |||||||||||||| | ||||||| | | | | ||| Sbjct 1248720 TTCACCCAAGCTTCATCCTGNTCATGGATAGATCACCCAGGTTCGGGTCCATAAGCAGTG 1248661 Query 315 CCACTCATACGCCCTATTCGGACTCGCTTTCGCTACGGCTACCCCACACGGGTTAACCT- 373 || | ||||||| |||||||||||||||||||| | |||| ||| Sbjct 1248660 ACAAT----TGCCCTATGAAGACTCGCTTTCGCTACGGCT-----CCGNTGGTTTCCCTT 1248610 Query 374 ---CGCGACACAACGCA-AACTCGCAGGCTCATTCTTCAAAAGGCACGCCGTCACCTGGT 429 | | ||| | | | |||| |||||||||||||| |||||||| ||| || Sbjct 1248609 AACCAGGCCACTGCCTATGAGTCGCCGGCTCATTCTTCAACAGGCACGCGNTCA--GAGT 1248552 Query 430 ACCTAAAAGGCACTT-----CAGCTCCGACGGATTGTAGGCACATGGTTTCAGGTACTAT 484 ||| | | ||| | |||| || | ||| || | ||||||| || |||| Sbjct 1248551 ACCGGACTGAGCCTTATAGCCTCCTCCCACTGCTTGGGAGCTTACGGTTTCATGTTCTAT 1248492 Query 485 TTCACTCCCCG 495 ||||||||||| Sbjct 1248491 TTCACTCCCCG 1248481 >seq1156 Length=2221788 Score = 127 bits (140), Expect = 7e-27 Identities = 137/179 (77%), Gaps = 7/179 (4%) Strand=Plus/Plus Query 391 TCGCAGGCTCATTCTTCAAAAGGCACGCCGTCACCTGGTACCTAAAAGGCACTTC-AGC- 448 |||| |||||||||||||| |||||||| |||| ||||| | | ||| ||| Sbjct 450096 TCGCCGGCTCATTCTTCAACAGGCACGCAGTCAGA--GTACCGGATTGAGCCTTATAGCC 450153 Query 449 ---TCCGACGGATTGTAGGCACATGGTTTCAGGTACTATTTCACTCCCCGCCAGGGGTAC 505 ||| || | ||| || | ||||||| || ||||||||||||||| ||||| | Sbjct 450154 TCCTCCCACTGCTTGGGAGCTTACGGTTTCATGTTCTATTTCACTCCCCGATGGGGGTTC 450213 Query 506 TTTTCACCTTTCCCTCACGGTACTTGTCCGCTATCGGTCACCAAGGAGTATTTAGGCTT 564 |||||||| ||||||||||||||| | | |||||||||||| |||||||||||| ||| Sbjct 450214 TTTTCACCCTTCCCTCACGGTACTACTTCACTATCGGTCACCCAGGAGTATTTAGCCTT 450272 >seq40 Length=179597 Score = 102 bits (112), Expect = 3e-19 Identities = 101/130 (78%), Gaps = 2/130 (2%) Strand=Plus/Minus Query 448 CTCCGACGGATTGTAGGCACATGGTTTCAGGTACT--ATTTCACTCCCCGCCAGGGGTAC 505 || |||| |||||| ||| | | |||||| || ||| |||||| |||| | Sbjct 122729 CTTCGACTGATTGTTCGCATCGGATCTCAGGTTCTCTATTGCACTCCTTAAATAGGGTTC 122670 Query 506 TTTTCACCTTTCCCTCACGGTACTTGTCCGCTATCGGTCACCAAGGAGTATTTAGGCTTA 565 ||||||||||||||||||||||||||| |||||||||||| |||| || ||||||||| Sbjct 122669 TTTTCACCTTTCCCTCACGGTACTTGTACGCTATCGGTCATTGAGGAATACTTAGGCTTA 122610 Query 566 ACGGGTGGTC 575 |||||||| Sbjct 122609 GAGGGTGGTC 122600 >seq1780 Length=2251 Score = 77.0 bits (84), Expect = 1e-11 Identities = 62/75 (83%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 470 GGTTTCAGGTACTATTTCACTCCCCGCCAGGGGTACTTTTCACCTTTCCCTCACGGTACT 529 ||||||| ||||||||| |||| | | || ||||||| ||||||||||||||||| Sbjct 719 GGTTTCACGTACTATTTAACTCTCTATTCAGAGTGCTTTTCAACTTTCCCTCACGGTACT 778 Query 530 TGTCCGCTATCGGTC 544 ||| ||||||||||| Sbjct 779 TGTTCGCTATCGGTC 793 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1817554578176