Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vigna_20radiata_20var._20radiata_20[refseq_20GCF_5F000741045.1_20201 5-10-28] 2,499 sequences; 463,637,892 total letters Query= AAMG01001291.1 Length=420 Score E Sequences producing significant alignments: (Bits) Value seq2122 461 2e-127 seq2499 212 2e-52 seq1156 152 1e-34 seq8 120 8e-25 seq2498 102 2e-19 seq551 100 7e-19 seq40 93.3 1e-16 seq780 78.8 2e-12 seq1780 73.4 1e-10 >seq2122 Length=2452 Score = 461 bits (510), Expect = 2e-127 Identities = 360/415 (87%), Gaps = 11/415 (3%) Strand=Plus/Plus Query 4 CCGATCCACAGGTCATTCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAG 63 || |||||||| |||| || |||| ||||||||| |||| ||||||||||||||| | Sbjct 370 CCTATCCACAGCTCATCCC-CTAA-TTTTTCAACATTAGTGGGTTCGGTCCTCCAGCACG 427 Query 64 TAGTTACCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTC 123 | |||||| |||| ||||||| |||| ||||||||| | ||||| |||||||| | Sbjct 428 T-GTTACCGTGCCTT-CAACCTGGCCAT-GGATAGATCATCTGGTTT-CGGGTCTACA-C 482 Query 124 CCAGCGACTAGACGCCCTAGTAAGACTCGCTTTTCGCTACGCCTCCCCTATTCGGTTAAG 183 ||||||||| |||||||| | |||||||||| |||||||||| ||||||||||||||| Sbjct 483 CCAGCGACTGAACGCCCTATTCGGACTCGCTTT-CGCTACGCCTTCCCTATTCGGTTAAG 541 Query 184 CTTTGCCACTGAAAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCAACAA 243 ||| ||||||||| |||||||||||||||||||||||||||||||||||||| ||||| Sbjct 542 CTT-GCCACTGAATGTAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACGGAACAA 600 Query 244 AGTGGGCTCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGG 303 || ||||| |||| ||||| |||||||||||||||||||||||||||||||| ||||| Sbjct 601 -GTCCGCTCCTACTGTTTGTATGCATACGGTTTCAGGATCTATTTCACTCCCCT-TCCGG 658 Query 304 GGTTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAG 363 ||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||| Sbjct 659 GGTTCTTTTCGCCTTTCCCTCACGGTACTGGTTCACTATCGGTCAGTCAGGAGTATTTAG 718 Query 364 CCTTGGAGGATGGTCCCCCCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACT 418 |||||||||||||||||||||| |||| ||| |||| |||| ||| |||||| Sbjct 719 CCTTGGAGGATGGTCCCCCCATCTTCAAACAGGATTTCACGTGTCCCGCCCTACT 773 >seq2499 Length=151271 Score = 212 bits (234), Expect = 2e-52 Identities = 313/427 (73%), Gaps = 26/427 (6%) Strand=Plus/Minus Query 9 CCACAGGTCATTCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGTT 68 ||||| |||| ||||| | || |||||| ||||||||||| |||||| ||||| | Sbjct 102993 CCACAACTCAT-CCGCTGA-TTCTTCAACATCAGTCGGTTCGGACCTCCACTTAGTT-TC 102937 Query 69 ACCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCCCAGC 128 |||||| ||| || |||| ||| ||||||||| ||| | || |||||| || | || Sbjct 102936 ACCCAAGCTT-CATCCTGGTCAT-GGATAGATCACCCAGGTT-CGGGTCCATAAGC-AGT 102881 Query 129 GACTAGACGCCCTAGTAAGACTCGCTTTTCGCTACGCCTCCCCTA--TTCGGTTAAGCTT 186 ||| | |||||| |||||||||||| ||||||| |||| | ||| |||| | Sbjct 102880 GACAATT-GCCCTATGAAGACTCGCTTT-CGCTACGGCTCCGGTGGTTTCCCTTAACCAA 102823 Query 187 TGCCACTGAAAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCA-----CCCAAC 241 ||||||| || |||||| | | |||| | ||| ||| |||| |||| || || Sbjct 102822 -GCCACTGCCTATGAGTCGCCGGCTCATTCTTCAACAGGCACGCGGTCAGAGTACCGGAC 102764 Query 242 AAAG-----TGGGCTCC---CACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTC 293 || | | |||| ||||||||| || |||||||||| | |||||||||||| Sbjct 102763 TGAGCCTTATAGCCTCCTCCCACTGCTTGGGAGCTTACGGTTTCATGTTCTATTTCACTC 102704 Query 294 CCCTCTCCGGGGTTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAG 353 ||| | |||||||||||| || |||||||||||||||| |||||||||||||| ||| Sbjct 102703 CCCGATG-GGGGTTCTTTTCACCCTTCCCTCACGGTACTACTTCACTATCGGTCACCCAG 102645 Query 354 TAGTATTTAGCCTTGGAGGATGGTCCCCCCATATTCAGACAAAGTTTCTCGTGCTCCGTC 413 |||||||||||||| | | |||||| | ||||| || || | ||||| || | Sbjct 102644 GAGTATTTAGCCTTGCAAGGTGGTCCTTGCTGATTCACACGGGATTCCACGTGCCCCATG 102585 Query 414 CTACTCG 420 ||||||| Sbjct 102584 CTACTCG 102578 Score = 212 bits (234), Expect = 2e-52 Identities = 313/427 (73%), Gaps = 26/427 (6%) Strand=Plus/Plus Query 9 CCACAGGTCATTCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGTT 68 ||||| |||| ||||| | || |||||| ||||||||||| |||||| ||||| | Sbjct 129177 CCACAACTCAT-CCGCTGA-TTCTTCAACATCAGTCGGTTCGGACCTCCACTTAGTT-TC 129233 Query 69 ACCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCCCAGC 128 |||||| ||| || |||| ||| ||||||||| ||| | || |||||| || | || Sbjct 129234 ACCCAAGCTT-CATCCTGGTCAT-GGATAGATCACCCAGGTT-CGGGTCCATAAGC-AGT 129289 Query 129 GACTAGACGCCCTAGTAAGACTCGCTTTTCGCTACGCCTCCCCTA--TTCGGTTAAGCTT 186 ||| | |||||| |||||||||||| ||||||| |||| | ||| |||| | Sbjct 129290 GACAATT-GCCCTATGAAGACTCGCTTT-CGCTACGGCTCCGGTGGTTTCCCTTAACCAA 129347 Query 187 TGCCACTGAAAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCA-----CCCAAC 241 ||||||| || |||||| | | |||| | ||| ||| |||| |||| || || Sbjct 129348 -GCCACTGCCTATGAGTCGCCGGCTCATTCTTCAACAGGCACGCGGTCAGAGTACCGGAC 129406 Query 242 AAAG-----TGGGCTCC---CACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTC 293 || | | |||| ||||||||| || |||||||||| | |||||||||||| Sbjct 129407 TGAGCCTTATAGCCTCCTCCCACTGCTTGGGAGCTTACGGTTTCATGTTCTATTTCACTC 129466 Query 294 CCCTCTCCGGGGTTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAG 353 ||| | |||||||||||| || |||||||||||||||| |||||||||||||| ||| Sbjct 129467 CCCGATG-GGGGTTCTTTTCACCCTTCCCTCACGGTACTACTTCACTATCGGTCACCCAG 129525 Query 354 TAGTATTTAGCCTTGGAGGATGGTCCCCCCATATTCAGACAAAGTTTCTCGTGCTCCGTC 413 |||||||||||||| | | |||||| | ||||| || || | ||||| || | Sbjct 129526 GAGTATTTAGCCTTGCAAGGTGGTCCTTGCTGATTCACACGGGATTCCACGTGCCCCATG 129585 Query 414 CTACTCG 420 ||||||| Sbjct 129586 CTACTCG 129592 >seq1156 Length=2221788 Score = 152 bits (168), Expect = 1e-34 Identities = 188/253 (74%), Gaps = 18/253 (7%) Strand=Plus/Plus Query 137 GCCCTAGTAAGACTCGCTTTTCGCTACGCCTCCCCTA--TTCGGTTAAGCTTTGCCACTG 194 |||||| |||||||| ||||||||||| |||| | ||| |||| | ||||||| Sbjct 450030 GCCCTATGAAGACTCG-TTTTCGCTACGGCTCCGGTGGTTTCCCTTAA-CGAAGCCACTG 450087 Query 195 AAAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCAACAA-AGTGGGC--- 250 || |||||| | | |||| | ||| ||| ||||||||| || | || || Sbjct 450088 CCTATGAGTCGCCGGCTCATTCTTCAACAGGCACGCAGTCAGAGTACCGGATTGAGCCTT 450147 Query 251 ---------TCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCC 301 |||||||||||| || |||||||||| | ||||||||||||||| | Sbjct 450148 ATAGCCTCCTCCCACTGCTTGGGAGCTTACGGTTTCATGTTCTATTTCACTCCCCGATG- 450206 Query 302 GGGGTTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTT 361 |||||||||||| || |||||||||||||||| |||||||||||||| ||| ||||||| Sbjct 450207 GGGGTTCTTTTCACCCTTCCCTCACGGTACTACTTCACTATCGGTCACCCAGGAGTATTT 450266 Query 362 AGCCTTGGAGGAT 374 ||||||| | ||| Sbjct 450267 AGCCTTGCAAGAT 450279 >seq8 Length=45727239 Score = 120 bits (132), Expect = 8e-25 Identities = 215/302 (71%), Gaps = 25/302 (8%) Strand=Plus/Minus Query 10 CACAGGTCATTCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGTTA 69 |||| |||| ||||||| || |||||| ||||||||||| |||||| ||||| | | Sbjct 1248773 CACAACTCAT-CCGCTAA-TTCTTCAACATCAGTCGGTTCGGACCTCCACTTAGT-TTCA 1248717 Query 70 CCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCCCAGCG 129 ||||| | |||| |||| ||| ||||||||| ||| | |||||||| | | ||| | Sbjct 1248716 CCCAAGC-TTCATCCTGNTCAT-GGATAGATCACCCAG-GTTCGGGTCCA-TAAGCAGTG 1248661 Query 130 ACTAGACGCCCTAGTAAGACTCGCTTTTCGCTACGCCTCCCCT--ATTCGGTTAAGCTTT 187 || | |||||| ||||||||| |||||||||| |||| | ||| |||| | Sbjct 1248660 AC-AATTGCCCTATGAAGACTCGC-TTTCGCTACGGCTCCGNTGGTTTCCCTTAA-CCAG 1248604 Query 188 GCCACTGAAAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTC-----ACCCAAC- 241 ||||||| || |||||| | | |||| | ||| ||| |||| || ||| || Sbjct 1248603 GCCACTGCCTATGAGTCGCCGGCTCATTCTTCAACAGGCACGCGNTCAGAGTACCGGACT 1248544 Query 242 -------AAAGTGGGCTCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCC 294 | || ||||||||||||| || |||||||||| | ||||||||||||| Sbjct 1248543 GAGCCTTATAGCCTCCTCCCACTGCTTGGGAGCTTACGGTTTCATGTTCTATTTCACTCC 1248484 Query 295 CC 296 || Sbjct 1248483 CC 1248482 >seq2498 Length=401262 Score = 102 bits (112), Expect = 2e-19 Identities = 102/130 (78%), Gaps = 3/130 (2%) Strand=Plus/Plus Query 255 ACTGCTTGTACGCATACGGTTTCAGGATCT--ATTTCACTCCCCTCTCCGGGGTTCTTTT 312 |||| |||| ||||| | | ||||| ||| ||| ||||||| | |||||||||| Sbjct 151916 ACTGATTGTTCGCATCGGATCTCAGGTTCTCTATTGCACTCCC-TAAATAGGGTTCTTTT 151974 Query 313 CGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTGGAGG 372 | |||||||||||||||||| || | |||||||||| | || | || |||| ||| |||| Sbjct 151975 CACCTTTCCCTCACGGTACTTGTACGCTATCGGTCATTGAGGAATACTTAGGCTTAGAGG 152034 Query 373 ATGGTCCCCC 382 ||||||||| Sbjct 152035 GTGGTCCCCC 152044 >seq551 Length=1408 Score = 100 bits (110), Expect = 7e-19 Identities = 207/295 (70%), Gaps = 25/295 (8%) Strand=Plus/Plus Query 9 CCACAGGTCATTCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGTT 68 ||||| |||| ||||| | || |||||| ||||||||||| |||||| ||||| | Sbjct 1124 CCACAACTCAT-CCGCTGA-TTCTTCAACATCAGTCGGTTCGGACCTCCACTTAGT-TTC 1180 Query 69 ACCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCCCAGC 128 |||||| | |||| |||| ||| ||||||||| ||| | |||||||| | | ||| Sbjct 1181 ACCCAAGC-TTCATCCTGGTCAT-GGATAGATCACCCAG-GTTCGGGTCCA-TAAGCAGT 1236 Query 129 GACTAGACGCCCTAGTAAGACTCGCTTTTCGCTACGCCTCCCCT--ATTCGGTTAAGCTT 186 ||| | |||||| ||||||||| |||||||||| |||| | ||| |||| | Sbjct 1237 GAC-AATTGCCCTATAAAGACTCGC-TTTCGCTACGACTCCGGTGGTTTCCCTTAA-CCA 1293 Query 187 TGCCACTGAAAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTC-----ACCCAAC 241 ||||||| || ||||| | | |||| | ||| ||| |||| ||| ||| || Sbjct 1294 AGCCACTGCCTATGAGTCGNCGGCTCATTCTTCAACAGGCACGCGGTCAGAGTACCGGAC 1353 Query 242 --------AAAGTGGGCTCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTT 288 | || ||||||||||||| || |||||||||| | ||||||| Sbjct 1354 TGAGCCTTATAGCCTCCTCCCACTGCTTGGGAGCTTACGGTTTCATGTTCTATTT 1408 >seq40 Length=179597 Score = 93.3 bits (102), Expect = 1e-16 Identities = 100/130 (77%), Gaps = 3/130 (2%) Strand=Plus/Minus Query 255 ACTGCTTGTACGCATACGGTTTCAGGATCT--ATTTCACTCCCCTCTCCGGGGTTCTTTT 312 |||| |||| ||||| | | ||||| ||| ||| |||||| | |||||||||| Sbjct 122724 ACTGATTGTTCGCATCGGATCTCAGGTTCTCTATTGCACTCCT-TAAATAGGGTTCTTTT 122666 Query 313 CGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTGGAGG 372 | |||||||||||||||||| || | |||||||||| | || | || |||| ||| |||| Sbjct 122665 CACCTTTCCCTCACGGTACTTGTACGCTATCGGTCATTGAGGAATACTTAGGCTTAGAGG 122606 Query 373 ATGGTCCCCC 382 ||||| ||| Sbjct 122605 GTGGTCTCCC 122596 >seq780 Length=866072 Score = 78.8 bits (86), Expect = 2e-12 Identities = 59/68 (87%), Gaps = 1/68 (1%) Strand=Plus/Plus Query 283 CTATTTCACTCCCCTCTCCGGGGTTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTAT 342 |||||||||||||| | |||||||||||| || |||||||| ||||||| |||||||| Sbjct 326198 CTATTTCACTCCCCGATG-GGGGTTCTTTTCACCCTTCCCTCATGGTACTACTTCACTAT 326256 Query 343 CGGTCAGT 350 ||||| || Sbjct 326257 CGGTCTGT 326264 >seq1780 Length=2251 Score = 73.4 bits (80), Expect = 1e-10 Identities = 77/100 (77%), Gaps = 1/100 (1%) Strand=Plus/Plus Query 271 CGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTTCTTTTCGCCTTTCCCTCACGGTA 330 |||||||| | |||||| |||| | | | | | || |||||| ||||||||||||||| Sbjct 718 CGGTTTCACGTACTATTTAACTCTC-TATTCAGAGTGCTTTTCAACTTTCCCTCACGGTA 776 Query 331 CTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTGGA 370 || |||| ||||||||| || ||||||||||| || Sbjct 777 CTTGTTCGCTATCGGTCTTGTGGTCATATTTAGCCTTAGA 816 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1241568972416