Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vigna_20radiata_20var._20radiata_20[refseq_20GCF_5F000741045.1_20201 5-10-28] 2,499 sequences; 463,637,892 total letters Query= AAMG01001432.1 Length=344 Score E Sequences producing significant alignments: (Bits) Value seq2499 215 1e-53 seq7 178 3e-42 seq9 163 6e-38 seq2498 136 8e-30 seq1 104 5e-20 >seq2499 Length=151271 Score = 215 bits (238), Expect = 1e-53 Identities = 232/305 (76%), Gaps = 18/305 (6%) Strand=Plus/Minus Query 1 GGCGTCGCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAG 60 ||| | ||| | ||||| |||| ||||||| | || || ||||||||||||||||||||| Sbjct 98655 GGCATTGCTCCGTCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTCCCGTAG 98596 Query 61 GAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGAT 120 ||||||||||||||||||||||||| |||||| | ||| |||||| | || ||||| ||| Sbjct 98595 GAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGACCAGCTACTGAT 98536 Query 121 CGTCGGCTTGGTGGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCCATCTTTCA 180 | ||| |||||| |||||| ||||||||||| |||||| | ||||||||| || | Sbjct 98535 CATCGCCTTGGTAAGCTATTGCCTCACCAACTAGCTAATCAGACGCGAGCCCCTCCTCGG 98476 Query 181 GC-GATAAATCTTTGGTCAAAGAATGATGCCATCCTCTGACATTATGCGGTATTAGCGTT 239 || ||| || || ||| ||||| | | || | ||||||||| Sbjct 98475 GCGGATTCCTCCTT------------TTGC--TCCTCAGCC--TACGGGGTATTAGCAGC 98432 Query 240 CGTTTCCAAACGTTATTCCACTCTGAAAGGCAGGTTGCTCACGTGTTACTCACCCGTCCG 299 |||||||| ||| |||| ||| || || ||||| || ||| |||||||||||||||| Sbjct 98431 CGTTTCCAGCTGTTGTTCCCCTCCCAAGGGTAGGTT-CTTACGCGTTACTCACCCGTCCG 98373 Query 300 CCACT 304 ||||| Sbjct 98372 CCACT 98368 Score = 215 bits (238), Expect = 1e-53 Identities = 232/305 (76%), Gaps = 18/305 (6%) Strand=Plus/Plus Query 1 GGCGTCGCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAG 60 ||| | ||| | ||||| |||| ||||||| | || || ||||||||||||||||||||| Sbjct 133515 GGCATTGCTCCGTCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTCCCGTAG 133574 Query 61 GAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGAT 120 ||||||||||||||||||||||||| |||||| | ||| |||||| | || ||||| ||| Sbjct 133575 GAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGACCAGCTACTGAT 133634 Query 121 CGTCGGCTTGGTGGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCCATCTTTCA 180 | ||| |||||| |||||| ||||||||||| |||||| | ||||||||| || | Sbjct 133635 CATCGCCTTGGTAAGCTATTGCCTCACCAACTAGCTAATCAGACGCGAGCCCCTCCTCGG 133694 Query 181 GC-GATAAATCTTTGGTCAAAGAATGATGCCATCCTCTGACATTATGCGGTATTAGCGTT 239 || ||| || || ||| ||||| | | || | ||||||||| Sbjct 133695 GCGGATTCCTCCTT------------TTGC--TCCTCAGCC--TACGGGGTATTAGCAGC 133738 Query 240 CGTTTCCAAACGTTATTCCACTCTGAAAGGCAGGTTGCTCACGTGTTACTCACCCGTCCG 299 |||||||| ||| |||| ||| || || ||||| || ||| |||||||||||||||| Sbjct 133739 CGTTTCCAGCTGTTGTTCCCCTCCCAAGGGTAGGTT-CTTACGCGTTACTCACCCGTCCG 133797 Query 300 CCACT 304 ||||| Sbjct 133798 CCACT 133802 >seq7 Length=55601358 Score = 178 bits (196), Expect = 3e-42 Identities = 222/298 (74%), Gaps = 16/298 (5%) Strand=Plus/Plus Query 7 GCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCT 66 ||| | ||||| |||| || |||| | || || ||||||| ||||||| || ||||||| Sbjct 32590197 GCTCCGTCAGGCTTTCGCCTATTGCGGAAAATTCCCCACTATTGCCTCCTGTGGGAGTCT 32590256 Query 67 GGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGG 126 ||||||||||||||||||| |||||| | ||| |||||| | || ||||| |||| ||| Sbjct 32590257 GGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGACCAGCTACTGATCATCGC 32590316 Query 127 CTTGGTGGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCCATCTTTCAGCGATA 186 |||||| |||||| ||||||||||| |||||| | || |||||| || | || || Sbjct 32590317 CTTGGTAAGCTATTGCCTCACCAACTAGCTAATCAGACGAGAGCCCCTCCT--AG-GACG 32590373 Query 187 AATCTTTGGTCAAAGAATGATGCCATCCTCTGACATTATGCGGTATTAGCGTTCGTTTCC 246 | || || | ||| ||||| | | || | ||||||||| ||||||| Sbjct 32590374 GA---TTCCTC-----CTTTTGC--TCCTCGGCC--TACGGGGTATTAGCAACCGTTTCC 32590421 Query 247 AAACGTTATTCCACTCTGAAAGGCAGGTTGCTCACGTGTTACTCACCCGTCCGCCACT 304 | ||| |||| ||| || | ||||| || |||||||||||||||||| |||||| Sbjct 32590422 AGCTGTTGTTCCCCTCCCAAGGATAGGTT-CTTACGTGTTACTCACCCGTCTGCCACT 32590478 Score = 156 bits (172), Expect = 8e-36 Identities = 214/297 (72%), Gaps = 18/297 (6%) Strand=Plus/Minus Query 7 GCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCT 66 ||| | ||||| |||| | ||||| | || || ||||||| |||| |||| ||||||||| Sbjct 32534490 GCTCCGTCAGGTTTTCGCTCATTGCGGAAAATTCCCCACTACTGCTTCCCATAGGAGTCT 32534431 Query 67 GGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGG 126 |||| ||||||||||||| |||||| | | | |||||||| || |||| |||| | | Sbjct 32534430 GGGCTATGTCTCAGTCCCAGTGTGGCTGCTTATCCTCTCAGACCAACTACTGATCATTGC 32534371 Query 127 CTTGGTGGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCCATCTTTCAG-CGAT 185 |||||| ||||||| ||||||||||| ||||| | || |||||| || | ||| Sbjct 32534370 CTTGGTAAGCTATTAGCTCACCAACTAGTTAATCAGACGTGAGCCCCAATTCGGGTGGAT 32534311 Query 186 AAATCTTTGGTCAAAGAATGATGCCATCCTCTGACATTATGCGGTATTAGCGTTCGTTTC 245 || || ||| ||||| | | || | |||||||| ||||||| Sbjct 32534310 TCCTCCTT------------TTGC--TCCTCAGCC--TACGGGGTATTAGTAGTCGTTTC 32534267 Query 246 CAAACGTTATTCCACTCTGAAAGGCAGGTTGCTCACGTGTTACTCACCCGTCCGCCA 302 ||| ||| |||| ||| || || ||||| || ||| ||||||||| |||| |||| Sbjct 32534266 CAACTGTTGTTCCCCTCCCAATGGTAGGTT-CTTACGCGTTACTCACTCGTCTGCCA 32534211 >seq9 Length=21008463 Score = 163 bits (180), Expect = 6e-38 Identities = 141/175 (81%), Gaps = 0/175 (0%) Strand=Plus/Plus Query 1 GGCGTCGCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAG 60 ||| | ||| | |||||||||| |||||| | || || ||||||||||||||||||||| Sbjct 8339357 GGCATTGCTCCGTCAGGGTTTCATCCATTGCGGAAAATTCCCCACTGCTGCCTCCCGTAG 8339416 Query 61 GAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGAT 120 |||||||| ||||||||||||| | |||| | | ||| ||||| | || ||||| ||| Sbjct 8339417 AAGTCTGGGTCGTGTCTCAGTCCTAGTGTGACTGATCATTCTCTCGGACCAGCTACTGAT 8339476 Query 121 CGTCGGCTTGGTGGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCCATC 175 | || |||||| |||||| ||||||||||| |||||| | ||||||||| || Sbjct 8339477 CATCACCTTGGTAAGCTATTCCCTCACCAACTAGCTAATCAGACGCGAGCCCCTC 8339531 >seq2498 Length=401262 Score = 136 bits (150), Expect = 8e-30 Identities = 122/153 (80%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 7 GCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCT 66 |||| ||| || |||| |||||||| ||| || ||||||||||||| ||||| |||||| Sbjct 124999 GCTGGATCGGGCTTTCGCCCATTGTCCAAGATTCCCCACTGCTGCCCCCCGTGGGAGTCC 125058 Query 67 GGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGG 126 ||||||||||||||||||| |||||| | ||| || || || |||| ||| | || Sbjct 125059 GGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCGAAAAGACCAGCTAAGCATCATTGG 125118 Query 127 CTTGGTGGGCTATTATCTCACCAACTACCTAAT 159 |||||| || ||| || |||||||||||||| Sbjct 125119 CTTGGTCAGCCTTTACCTGACCAACTACCTAAT 125151 >seq1 Length=36501346 Score = 104 bits (114), Expect = 5e-20 Identities = 69/77 (90%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 13 TCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCG 72 ||| | |||| ||||||| | || || ||||||||||||||||||||||||||||||||| Sbjct 34744920 TCAAGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCG 34744979 Query 73 TGTCTCAGTCCCAATGT 89 ||||||||||||| ||| Sbjct 34744980 TGTCTCAGTCCCAGTGT 34744996 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 998375049984