Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vigna_20radiata_20var._20radiata_20[refseq_20GCF_5F000741045.1_20201 5-10-28] 2,499 sequences; 463,637,892 total letters Query= AAMG01001752.1 Length=400 Score E Sequences producing significant alignments: (Bits) Value seq2499 226 7e-57 seq2498 163 7e-38 seq2040 150 4e-34 seq8 150 4e-34 seq2122 143 6e-32 seq7 143 6e-32 seq9 140 8e-31 seq3 100 7e-19 >seq2499 Length=151271 Score = 226 bits (250), Expect = 7e-57 Identities = 303/410 (74%), Gaps = 20/410 (5%) Strand=Plus/Minus Query 1 CGACTACGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAACTTGACC 60 ||||||||||| ||||||| |||||| || ||||||||| | ||| ||| | | Sbjct 103609 CGACTACGCCTTTCGGCCTGATCTTAGGCCCTGACTCACCCTCCGTGGACGAACCTTGCG 103550 Query 61 CTGGAACCCTTGGATAATCGGCGGACGGGATTCCCACC--CGTCACACGCTACTCATGCC 118 ||||||||||| | ||| | | |||||| |||| ||| || |||||| ||| Sbjct 103549 GAGGAACCCTTGGGTTTTCGAGGCATTGGATTCTCACCAACGTTTG-CGTTACTCAAGCC 103491 Query 119 TGCATTCTCACT--CGCATCAACTCCACCACACAGTCACCCGGCAGCTTCACCACTGACA 176 ||||||| || ||| || |||| ||| || | ||| |||| || || | Sbjct 103490 GACATTCTCGCTTCCGCTTCG--TCCAGCACTGC-TCGCGCGGGTCCTTCCCC-CTAAGG 103435 Query 177 CG--ACGCTCCCCTACCCAACCAC----ACAGGTTGCCACAGCTTCGGCGGATAACTTAA 230 || ||||||||||||| | || ||| | ||||||||||||| ||| |||| Sbjct 103434 CGGAACGCTCCCCTACCGATTCATTTTGACA---TCCCACAGCTTCGGCAGATCGCTTA- 103379 Query 231 GCCCCGCTACATTATCGGCGCGGAATCACTTGACCAGTGAGCTATTACGCACTCTTTCAA 290 |||||| | ||| ||||||| | | || || |||||||||||||||||||||||||| Sbjct 103378 GCCCCGTT-CATCTTCGGCGCAAGAGCGCTCGATCAGTGAGCTATTACGCACTCTTTCAA 103320 Query 291 GGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACATCCTTTCCCACT 350 || |||||||||| | || |||||||||||||||| ||| | | || |||||| |||| Sbjct 103319 GGGTGGCTGCTTCTAGGCAAACCTCCTGGTTGTCTCTGCACCCCTACCTCCTTTATCACT 103260 Query 351 GAGTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCTCTCG 400 ||| || |||||||||||||||| ||||| ||||||||||||||||| Sbjct 103259 GAGCGGTCATTTAGGGGCCTTAGCTGGTGATCCGGGCTGTTTCCCTCTCG 103210 Score = 226 bits (250), Expect = 7e-57 Identities = 303/410 (74%), Gaps = 20/410 (5%) Strand=Plus/Plus Query 1 CGACTACGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAACTTGACC 60 ||||||||||| ||||||| |||||| || ||||||||| | ||| ||| | | Sbjct 128561 CGACTACGCCTTTCGGCCTGATCTTAGGCCCTGACTCACCCTCCGTGGACGAACCTTGCG 128620 Query 61 CTGGAACCCTTGGATAATCGGCGGACGGGATTCCCACC--CGTCACACGCTACTCATGCC 118 ||||||||||| | ||| | | |||||| |||| ||| || |||||| ||| Sbjct 128621 GAGGAACCCTTGGGTTTTCGAGGCATTGGATTCTCACCAACGTTTG-CGTTACTCAAGCC 128679 Query 119 TGCATTCTCACT--CGCATCAACTCCACCACACAGTCACCCGGCAGCTTCACCACTGACA 176 ||||||| || ||| || |||| ||| || | ||| |||| || || | Sbjct 128680 GACATTCTCGCTTCCGCTTCG--TCCAGCACTGC-TCGCGCGGGTCCTTCCCC-CTAAGG 128735 Query 177 CG--ACGCTCCCCTACCCAACCAC----ACAGGTTGCCACAGCTTCGGCGGATAACTTAA 230 || ||||||||||||| | || ||| | ||||||||||||| ||| |||| Sbjct 128736 CGGAACGCTCCCCTACCGATTCATTTTGACA---TCCCACAGCTTCGGCAGATCGCTTA- 128791 Query 231 GCCCCGCTACATTATCGGCGCGGAATCACTTGACCAGTGAGCTATTACGCACTCTTTCAA 290 |||||| | ||| ||||||| | | || || |||||||||||||||||||||||||| Sbjct 128792 GCCCCGTT-CATCTTCGGCGCAAGAGCGCTCGATCAGTGAGCTATTACGCACTCTTTCAA 128850 Query 291 GGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACATCCTTTCCCACT 350 || |||||||||| | || |||||||||||||||| ||| | | || |||||| |||| Sbjct 128851 GGGTGGCTGCTTCTAGGCAAACCTCCTGGTTGTCTCTGCACCCCTACCTCCTTTATCACT 128910 Query 351 GAGTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCTCTCG 400 ||| || |||||||||||||||| ||||| ||||||||||||||||| Sbjct 128911 GAGCGGTCATTTAGGGGCCTTAGCTGGTGATCCGGGCTGTTTCCCTCTCG 128960 >seq2498 Length=401262 Score = 163 bits (180), Expect = 7e-38 Identities = 152/192 (79%), Gaps = 6/192 (3%) Strand=Plus/Plus Query 212 GCTTCGGCGGATAACTTAAGCCCCGCTACATTATCGGCGC---GGAATCACTTGACCAGT 268 ||||||| | || |||| ||||| | |||||| |||| || ||| || ||||||| Sbjct 151262 GCTTCGGTGAATCACTTGAGCCCTGATACATTTTCGGTGCCATGGAG---CTAGACCAGT 151318 Query 269 GAGCTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACG 328 |||||||||||| | || ||||||||||||||||||||| |||||||||||||| || Sbjct 151319 GAGCTATTACGCTTTATTCAAAGGATGGCTGCTTCCAAGCCCACCTCCTGGTTGTCATCG 151378 Query 329 CAACTCCACATCCTTTCCCACTGAGTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCT 388 | ||| |||||| ||||| ||| | ||||||| ||||||| | |||||||||| Sbjct 151379 CTCGATCACTTCCTTTTCCACTAAGTGATTGCTTAGGGACCTTAGCGTACGATCTGGGCT 151438 Query 389 GTTTCCCTCTCG 400 |||||||||||| Sbjct 151439 GTTTCCCTCTCG 151450 >seq2040 Length=473612 Score = 150 bits (166), Expect = 4e-34 Identities = 112/131 (85%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 270 AGCTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGC 329 ||||||||||||||||||||||| |||||||||| | || |||||||||||||||| || Sbjct 30124 AGCTATTACGCACTCTTTCAAGGGTGGCTGCTTCTAGGCAAACCTCCTGGTTGTCTCTGC 30065 Query 330 AACTCCACATCCTTTCCCACTGAGTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCTG 389 | | | || |||||| ||||||| || |||||||||||||||| ||||| |||||| Sbjct 30064 ACCCCTACCTCCTTTATCACTGAGCGGTCATTTAGGGGCCTTAGCTGGTGATCCGGGCTG 30005 Query 390 TTTCCCTCTCG 400 ||||||||||| Sbjct 30004 TTTCCCTCTCG 29994 >seq8 Length=45727239 Score = 150 bits (166), Expect = 4e-34 Identities = 154/197 (78%), Gaps = 3/197 (2%) Strand=Plus/Minus Query 204 TTGCCACAGCTTCGGCGGATAACTTAAGCCCCGCTACATTATCGGCGCGGAATCACTTGA 263 || ||||||||||||| ||| |||| | |||| | ||| |||| || | | || || Sbjct 1249184 TTTCCACAGCTTCGGCAGATCGCTTA-GTCCCGTT-CATCTTCGGTGCAAGAGCGCTCGA 1249127 Query 264 CCAGTGAGCTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGT 323 |||||||||||||||||||||||||||| ||| |||||| | || |||||||| ||||| Sbjct 1249126 TCAGTGAGCTATTACGCACTCTTTCAAGGGTGGTTGCTTCTAGGCAAACCTCCTAGTTGT 1249067 Query 324 CTACGCAACTCCACATCCTTTCCCACTGAGTCACCACTTAGGGGCCTTAGCTGATGATCT 383 || ||| | | || |||||| ||||||| || ||||||||||||| || ||||| Sbjct 1249066 CTCTGCACCCCTACCTCCTTTGTCACTGAGCGGTCATTTAGGGGCCTTAGTTGGTGATCC 1249007 Query 384 GGGCTGTTTCCCTCTCG 400 || || |||||||||| Sbjct 1249006 AGGTTG-TTCCCTCTCG 1248991 >seq2122 Length=2452 Score = 143 bits (158), Expect = 6e-32 Identities = 134/169 (79%), Gaps = 1/169 (1%) Strand=Plus/Plus Query 230 AGCCCCGCTACATTATCGGCGCGGAATCACTTGACCAGTGAGCTATTACGCACTCTTTCA 289 ||||||| ||||| || |||| | | ||| || |||||||||||||||| ||||| | Sbjct 7 AGCCCCGTTACATCTTCCGCGCAGGACGACTCGATCAGTGAGCTATTACGCTTTCTTTAA 66 Query 290 AGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACATCCTTTCCCAC 349 |||||||||||||| |||||||||||||| |||||| || |||| || |||||||| Sbjct 67 AGGATGGCTGCTTCTAAGCCAACCTCCTGACTGTCTATGCCTTCCCACTTCGTTTCCCAC 126 Query 350 TGAGTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCTCT 398 | || | | || ||| ||||||||| | |||||| ||||||||||| Sbjct 127 TTAG-CGATAATTTGGGACCTTAGCTGGCGGTCTGGGTTGTTTCCCTCT 174 >seq7 Length=55601358 Score = 143 bits (158), Expect = 6e-32 Identities = 149/193 (77%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 207 CCACAGCTTCGGCGGATAACTTAAGCCCCGCTACATTATCGGCGCGGAATCACTTGACCA 266 ||||||||| ||| ||| |||| ||||| | ||| ||| ||| | | || || || Sbjct 13246797 CCACAGCTTTGGCAGATCGCTTA-GCCCCATT-CATCTTCGACGCAAGAGCGCTCGATCA 13246740 Query 267 GTGAGCTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTA 326 |||||||||||||||||||||||| | |||||||||| | || || |||||| || || Sbjct 13246739 GTGAGCTATTACGCACTCTTTCAAAGGTGGCTGCTTCTAGGCAAATCTCCTGATTATCCC 13246680 Query 327 CGCAACTCCACATCCTTTCCCACTGAGTCACCACTTAGGGGCCTTAGCTGATGATCTGGG 386 ||| | | || |||||| |||||| | || ||| |||||||| ||| |||||||| Sbjct 13246679 TGCACCCCTACCTCCTTTATCACTGAACGATCATTTAAGGGCCTTAACTGGTGATCTGGA 13246620 Query 387 CTGTTTCCCTCTC 399 ||||||||||||| Sbjct 13246619 CTGTTTCCCTCTC 13246607 >seq9 Length=21008463 Score = 140 bits (154), Expect = 8e-31 Identities = 148/194 (76%), Gaps = 2/194 (1%) Strand=Plus/Plus Query 207 CCACAGCTTCGGCGGATAACTTAAGCCCCGCTACATTATCGGCGCGGAATCACTTGACCA 266 ||||||||||| | ||| ||| | | | ||| ||||||| | |||| || || Sbjct 4020705 CCACAGCTTCGACAGATCGTTTATCCACA--TTCATCTTCGGCGCAAGAGCACTCGATCA 4020762 Query 267 GTGAGCTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTA 326 |||||||||||||||||||||||||| ||| | |||| | || |||||||||||||||| Sbjct 4020763 GTGAGCTATTACGCACTCTTTCAAGGGTGGATACTTCTAGGCAAACCTCCTGGTTGTCTC 4020822 Query 327 CGCAACTCCACATCCTTTCCCACTGAGTCACCACTTAGGGGCCTTAGCTGATGATCTGGG 386 ||| | | || |||||| |||| || || |||||||||||| || ||||| || Sbjct 4020823 TGCACCCCTACCTCCTTTATCACTTAGCGGTCATTTAGGGGCCTTAATTGGTGATCCAGG 4020882 Query 387 CTGTTTCCCTCTCG 400 ||||||||||||| Sbjct 4020883 TTGTTTCCCTCTCG 4020896 >seq3 Length=12950713 Score = 100 bits (110), Expect = 7e-19 Identities = 108/142 (76%), Gaps = 1/142 (1%) Strand=Plus/Plus Query 259 CTTGACCAGTGAGCTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTG 318 ||||| |||||||||||||||||| |||| || ||||| |||| || ||||||||| Sbjct 4760864 CTTGATCAGTGAGCTATTACGCAC-CTTTAAAAAGTGGCTACTTCTGGGCAAACCTCCTG 4760922 Query 319 GTTGTCTACGCAACTCCACATCCTTTCCCACTGAGTCACCACTTAGGGGCCTTAGCTGAT 378 || ||| || | | || |||||| || |||| |||| ||| ||||||||| || | Sbjct 4760923 ATTTTCTCTACACCCCTACCTCCTTTATCATTGAGCGACCATTTAAGGGCCTTAGTTGGT 4760982 Query 379 GATCTGGGCTGTTTCCCTCTCG 400 ||| || ||||||| ||||| Sbjct 4760983 GATTAAGGTTGTTTCCTTCTCG 4761004 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1177570571776