Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vigna_20radiata_20var._20radiata_20[refseq_20GCF_5F000741045.1_20201 5-10-28] 2,499 sequences; 463,637,892 total letters Query= AAMG01001821.1 Length=161 Score E Sequences producing significant alignments: (Bits) Value seq2122 232 6e-59 seq2498 123 2e-26 seq2499 122 7e-26 seq1441 122 7e-26 seq1 104 2e-20 seq7 100 2e-19 >seq2122 Length=2452 Score = 232 bits (256), Expect = 6e-59 Identities = 148/161 (92%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 1 TCGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCG 60 |||||||||||||| | |||||||||||||| ||||||||||| ||||||||||||| Sbjct 1979 TCGAGTTGCAGACTGCGATCCGGACTACGATCGGGTTTCTGGGATTGGCTCCCCCTCGCG 2038 Query 61 GGTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCA 120 ||||||| |||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 2039 GGTTGGCTACCCTCTGTCCCGACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCA 2098 Query 121 TGAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161 ||||||||||||||||||||||||||||||||||||||||| Sbjct 2099 TGAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 2139 >seq2498 Length=401262 Score = 123 bits (136), Expect = 2e-26 Identities = 124/160 (78%), Gaps = 1/160 (1%) Strand=Plus/Plus Query 2 CGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGG 61 ||||||||||| |||||||| ||| | | ||||| || ||| ||||| ||| | | Sbjct 123679 CGAGTTGCAGAGAACAATCCGAACTGAGGCAATCTTTCCGG-ATTCGCTCCGCCTTACAG 123737 Query 62 GTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCAT 121 | || ||| |||| | |||||||| ||||||| |||| |||||||||||||| Sbjct 123738 CCTTGCTTCCCATTGTAATTGCCATTGTAGCACGTGTGTGGCCCAGCCCATAAGGGCCAT 123797 Query 122 GAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161 | |||||||||||||||||||||||||||| || | |||| Sbjct 123798 GCGGACTTGACGTCATCCCCACCTTCCTCCAGTATATCAC 123837 >seq2499 Length=151271 Score = 122 bits (134), Expect = 7e-26 Identities = 123/160 (77%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 2 CGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGG 61 |||||||||| |||||||||| ||| | ||| ||| ||||||| ||||||||| Sbjct 99554 CGAGTTGCAGCCTACAATCCGAACTGAGGACGGGTTTTTGGAGTTAGCTCACCCTCGCGG 99495 Query 62 GTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCAT 121 | | ||| ||| ||| |||||||| ||||||| |||| |||||||| ||| Sbjct 99494 GATCGCGATCCTTTGTCCCGTCCATTGTAGCACGTGTGTCGCCCAGGGCATAAGGGGCAT 99435 Query 122 GAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161 || ||||||||||||||| ||||||||||||| || |||| Sbjct 99434 GATGACTTGACGTCATCCTCACCTTCCTCCGGCTTATCAC 99395 Score = 122 bits (134), Expect = 7e-26 Identities = 123/160 (77%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 2 CGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGG 61 |||||||||| |||||||||| ||| | ||| ||| ||||||| ||||||||| Sbjct 132616 CGAGTTGCAGCCTACAATCCGAACTGAGGACGGGTTTTTGGAGTTAGCTCACCCTCGCGG 132675 Query 62 GTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCAT 121 | | ||| ||| ||| |||||||| ||||||| |||| |||||||| ||| Sbjct 132676 GATCGCGATCCTTTGTCCCGTCCATTGTAGCACGTGTGTCGCCCAGGGCATAAGGGGCAT 132735 Query 122 GAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161 || ||||||||||||||| ||||||||||||| || |||| Sbjct 132736 GATGACTTGACGTCATCCTCACCTTCCTCCGGCTTATCAC 132775 >seq1441 Length=6273 Score = 122 bits (134), Expect = 7e-26 Identities = 123/160 (77%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 2 CGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGG 61 |||||||||| |||||||||| ||| | ||| ||| ||||||| ||||||||| Sbjct 1504 CGAGTTGCAGCCTACAATCCGAACTGAGGACGGGTTTTTGGAGTTAGCTCACCCTCGCGG 1445 Query 62 GTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCAT 121 | | ||| ||| ||| |||||||| ||||||| |||| |||||||| ||| Sbjct 1444 GATCGCGATCCTTTGTCCCGTCCATTGTAGCACGTGTGTCGCCCAGGGCATAAGGGGCAT 1385 Query 122 GAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161 || ||||||||||||||| ||||||||||||| || |||| Sbjct 1384 GATGACTTGACGTCATCCTCACCTTCCTCCGGCTTATCAC 1345 >seq1 Length=36501346 Score = 104 bits (114), Expect = 2e-20 Identities = 119/159 (75%), Gaps = 1/159 (1%) Strand=Plus/Plus Query 2 CGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGG 61 |||||||||| |||||||||| ||| | || ||| ||| ||||||| |||| || | Sbjct 34744055 CGAGTTGCAGCCTACAATCCGAACTGAGG-ACGGTTTTTGGAGTTAGCTCACCCTTGCAG 34744113 Query 62 GTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCAT 121 | | ||| ||| ||| |||||||| |||| || |||| |||||||| ||| Sbjct 34744114 GATCGCGATCCTTTGTCCCGTCCATTGTAGCACGTCTGTCGCCCAGGGCATAAGGGGCAT 34744173 Query 122 GAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCA 160 || ||||||||| ||||| ||||||||||| | || ||| Sbjct 34744174 GATGACTTGACGCCATCCTCACCTTCCTCCAGCTTATCA 34744212 >seq7 Length=55601358 Score = 100 bits (110), Expect = 2e-19 Identities = 121/161 (75%), Gaps = 4/161 (2%) Strand=Plus/Minus Query 2 CGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGA-TTAGCTCCCCCTCGCG 60 |||||||||| ||||||||| |||| | || |||| ||| ||||||| |||||||| Sbjct 32535394 CGAGTTGCAGCCTACAATCCAAACTAAGG-ACGGGTTCTTGGAATTAGCTCACCCTCGCG 32535336 Query 61 GGTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCA 120 || | || ||| ||| |||||||| || |||| || |||||||| || Sbjct 32535335 GGATCGCAATCCTTTGTCCCATCCATTGTAGCACATGTGTCACCTAGGGCATAAGGGGCA 32535276 Query 121 TGAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161 ||| ||||||||||||||| ||||||||||| ||| |||| Sbjct 32535275 TGATGACTTGACGTCATCCTCACCTTCCTCC--TTTATCAC 32535237 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 415989929030