Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vigna_20radiata_20var._20radiata_20[refseq_20GCF_5F000741045.1_20201 5-10-28] 2,499 sequences; 463,637,892 total letters Query= AAMG01001962.1 Length=275 Score E Sequences producing significant alignments: (Bits) Value seq1976 269 4e-70 seq2499 264 2e-68 seq2498 196 8e-48 seq11 185 1e-44 seq5 125 1e-26 seq2 75.2 2e-11 >seq1976 Length=1322 Score = 269 bits (298), Expect = 4e-70 Identities = 218/261 (84%), Gaps = 2/261 (1%) Strand=Plus/Plus Query 16 GCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGCTATGCACTTGGCA 75 ||||||||||||||||| ||||| ||||| |||||||| ||| || |||| |||||| Sbjct 484 GCTTAGATGCCTTCAGCGGTTATCTCTTCCGTACTTAGCTACCCGGCAATGCCATTGGCA 543 Query 76 GTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGACA-GCTCC 134 ||||| ||| |||||||||| ||||| ||||||||||||||||| | || ||||| Sbjct 544 TGACAACCGGTACACCAGAGGTACGTCCACTCCGGTCCTCTCGTACTAGGAGCAGGCTCC 603 Query 135 TCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCGACGTTCTGAACC 194 |||| | ||| ||||||||| | |||||||||| ||||||||| ||||||| | |||| Sbjct 604 -GTCAAGTATCCAACGCCCACGGCAGATAGGGACCAAACTGTCTCACGACGTTTTAAACC 662 Query 195 CAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTCAGCCCCA 254 |||||| ||| ||||||||| ||||||||||| |||||||||||| || |||||||| Sbjct 663 CAGCTCACGTACCTCTTTAAATGGCGAACAGCCATACCCTTGGGACCGGCTACAGCCCCA 722 Query 255 GGATGAGACGAGCCGACATCG 275 |||||||| |||||||||||| Sbjct 723 GGATGAGATGAGCCGACATCG 743 >seq2499 Length=151271 Score = 264 bits (292), Expect = 2e-68 Identities = 223/273 (82%), Gaps = 1/273 (0%) Strand=Plus/Minus Query 4 GGAGGGCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGC- 62 || ||| ||| ||||||||| |||||| |||||| ||| |||| ||| |||||| Sbjct 105002 GGTGGGTTTCCTACTTAGATGCTTTCAGCAGTTATCCGCTCCGCACTTGGCTACCCAGCG 104943 Query 63 TATGCACTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACT 122 | | | | |||| | |||||| |||||||||| |||| |||||||||||||||||| Sbjct 104942 TTTACCGTGGGCACGATAACTGGCACACCAGAGGTGCGTCCTTCCCGGTCCTCTCGTACT 104883 Query 123 AAGGACAGCTCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCG 182 | ||| || ||||||||| || |||||||| |||||| ||||||||||||||| || Sbjct 104882 AGGGAAAGGTCCTCTCAATGCTCTAACGCCCACACCGGATATGGACCGAACTGTCTCACG 104823 Query 183 ACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCT 242 |||||||||||||||||| ||| || ||||||||||||||||||||||||||||| || | Sbjct 104822 ACGTTCTGAACCCAGCTCACGTACCGCTTTAATGGGCGAACAGCCCAACCCTTGGAACAT 104763 Query 243 ACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275 ||| |||||||||| | || |||||||||||| Sbjct 104762 ACTACAGCCCCAGGTGGCGAAGAGCCGACATCG 104730 Score = 264 bits (292), Expect = 2e-68 Identities = 223/273 (82%), Gaps = 1/273 (0%) Strand=Plus/Plus Query 4 GGAGGGCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGC- 62 || ||| ||| ||||||||| |||||| |||||| ||| |||| ||| |||||| Sbjct 127168 GGTGGGTTTCCTACTTAGATGCTTTCAGCAGTTATCCGCTCCGCACTTGGCTACCCAGCG 127227 Query 63 TATGCACTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACT 122 | | | | |||| | |||||| |||||||||| |||| |||||||||||||||||| Sbjct 127228 TTTACCGTGGGCACGATAACTGGCACACCAGAGGTGCGTCCTTCCCGGTCCTCTCGTACT 127287 Query 123 AAGGACAGCTCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCG 182 | ||| || ||||||||| || |||||||| |||||| ||||||||||||||| || Sbjct 127288 AGGGAAAGGTCCTCTCAATGCTCTAACGCCCACACCGGATATGGACCGAACTGTCTCACG 127347 Query 183 ACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCT 242 |||||||||||||||||| ||| || ||||||||||||||||||||||||||||| || | Sbjct 127348 ACGTTCTGAACCCAGCTCACGTACCGCTTTAATGGGCGAACAGCCCAACCCTTGGAACAT 127407 Query 243 ACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275 ||| |||||||||| | || |||||||||||| Sbjct 127408 ACTACAGCCCCAGGTGGCGAAGAGCCGACATCG 127440 >seq2498 Length=401262 Score = 196 bits (216), Expect = 8e-48 Identities = 194/251 (77%), Gaps = 4/251 (2%) Strand=Plus/Plus Query 29 CAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGCTATGCACTTGGCAGTACAACTGGTGC 88 |||| || | || | | |||||||| ||| || ||| |||||| ||||| ||| | Sbjct 149550 CAGCAGTTCTTCCATACCAACTTAGCAGCCCGGCGCTGCTATTGGCATAACAACCGGTAC 149609 Query 89 ACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGACAGCTCCTCTCAAATTTCCT- 147 |||| ||||| | ||| ||| |||||||||||||| || ||||||| || | ||| Sbjct 149610 ACCATAGGTTGGCCCAACCCAGTCCTCTCGTACTAGGGTTGGCTCCTCGCAGTTCTCCCT 149669 Query 148 ---ACGCCCACGACGGATAGGGACCGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGT 204 || || ||| |||||| ||||||||||||| ||||||||| |||||| ||| ||| Sbjct 149670 TTAACACCAACGGTAGATAGGAACCGAACTGTCTCACGACGTTCTAAACCCAACTCACGT 149729 Query 205 GCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTCAGCCCCAGGATGAGACG 264 || ||| ||| |||||||| || |||||||||||||| ||||| |||||||||| || | Sbjct 149730 ACCACTTGAATCGGCGAACAACCGAACCCTTGGGACCTTCTTCAACCCCAGGATGTGATG 149789 Query 265 AGCCGACATCG 275 || |||||||| Sbjct 149790 AGTCGACATCG 149800 >seq11 Length=19732206 Score = 185 bits (204), Expect = 1e-44 Identities = 137/160 (86%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 116 TCGTACTAAGGACAGCTCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTG 175 |||||||| ||| || | ||||||| || |||||||| |||||| ||||||||||| Sbjct 17094487 TCGTACTAGGGAAAGGTTCTCTCAATGCTCTAACGCCCACACCGGATATGGACCGAACTG 17094546 Query 176 TCTCGCGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTT 235 |||| |||||||||||||||||||| ||| || ||||||||||||||||||||||||||| Sbjct 17094547 TCTCACGACGTTCTGAACCCAGCTCACGTACCGCTTTAATGGGCGAACAGCCCAACCCTT 17094606 Query 236 GGGACCTACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275 || || |||| |||||||||| | || |||||||||||| Sbjct 17094607 GGAACATACTACAGCCCCAGGTGGCGAAGAGCCGACATCG 17094646 >seq5 Length=37180910 Score = 125 bits (138), Expect = 1e-26 Identities = 130/169 (77%), Gaps = 1/169 (1%) Strand=Plus/Minus Query 17 CTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGC-TATGCACTTGGCA 75 ||||||||| |||||| |||| | ||| |||| ||| ||||| | | | | |||| Sbjct 462168 CTTAGATGCTTTCAGCAGTTATTCGCTCCGCACTTGGCTATCCAGCGTTTACCGTGGGCA 462109 Query 76 GTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGACAGCTCCT 135 | |||||| |||||||||| |||| || |||||||||||||||| ||| || |||| Sbjct 462108 CGATAACTGGCACACCAGAGGTGCGTCCTTCTCGGTCCTCTCGTACTAGGGAAAGGTCCT 462049 Query 136 CTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCGAC 184 ||||| || |||||||| |||||| ||| ||||||||||| |||| Sbjct 462048 CTCAATGCTCTAACGCCCACACCGGATATGGATCGAACTGTCTCACGAC 462000 >seq2 Length=25360630 Score = 75.2 bits (82), Expect = 2e-11 Identities = 116/166 (70%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 110 GTCCTCTCGTACTAAGGACAGCTCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACC 169 ||||||||||| || ||| || | |||| || || ||| | | || ||| ||||| Sbjct 3265670 GTCCTCTCGTATTAGGGAAAGATTCTCTTAATACTCTAACGTCTATATCGAATATGGACC 3265729 Query 170 GAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCA 229 || | ||| | ||||| |||||| | || ||| ||||||| ||||||| || | Sbjct 3265730 AAATTATCTGACAACGTTATGAACCGAATTCACGTATTGCTTTAATAAGCGAACAACCTA 3265789 Query 230 ACCCTTGGGACCTACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275 ||| |||| | |||| || || |||| || | |||| |||||| Sbjct 3265790 ACCTTTGGAATATACTACAACCTCAGGTGGAAAAGAGCTAACATCG 3265835 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 780781097564