Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vigna_20radiata_20var._20radiata_20[refseq_20GCF_5F000741045.1_20201 5-10-28] 2,499 sequences; 463,637,892 total letters Query= AAMG01002183.1 Length=408 Score E Sequences producing significant alignments: (Bits) Value seq2499 262 9e-68 seq7 235 1e-59 seq2498 208 2e-51 seq1 188 2e-45 seq6 122 2e-25 seq784 107 5e-21 seq8 95.1 3e-17 seq3 93.3 1e-16 >seq2499 Length=151271 Score = 262 bits (290), Expect = 9e-68 Identities = 298/397 (75%), Gaps = 2/397 (1%) Strand=Plus/Plus Query 13 AAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCG 72 |||| ||||||||| ||||||||||||||||||| || ||| || ||||||||||| Sbjct 98729 AAGCATCGGCTAACTCTGTGCCAGCAGCCGCGGTAAGACAGAGGATGCAAGCGTTATCCG 98788 Query 73 GAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTGAAAGGCTATGG 132 |||| | ||||||||||| || |||||||| || |||||| | || ||| | | || Sbjct 98789 GAATGATTGGGCGTAAAGCGTCTGTAGGTGGCTTTTTAAGTTCGCCGTCAAATCCCAGGG 98848 Query 133 CTCAACCCCGGGACTGCTTTTGAAACTGCAGGGCTAGAGTGCAGGAGGGGCAAGTGGAAT 192 |||||||| || || | |||||| | ||| |||| | | ||||||| ||||| Sbjct 98849 CTCAACCCTGGACAGGCGGTGGAAACTACCAAGCTGGAGTACGGTAGGGGCAGAGGGAAT 98908 Query 193 TCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTT 252 | | ||| |||||||||||||||||| || | | |||||||| |||||| || | Sbjct 98909 TTCCGGTGGAGCGGTGAAATGCGTAGAGATCGGAAAGAACACCAACGGCGAAAGCACTCT 98968 Query 253 GCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATTAGATACCC 312 ||||| | | |||||||||||| ||||||| ||||||| || ||||||||||||| Sbjct 98969 GCTGGGCCGACACTGACACTGAGAGACGAAAGCTAGGGGAGCGAATGGGATTAGATACCC 99028 Query 313 TGGTAGTCCACGCCGTAAACGATGAATACTAGGTGTCGGGGCGCAT-AAGTGCTCCGGTG 371 ||||||| ||||||||||||| |||||||| | | | ||| || | | | || Sbjct 99029 CAGTAGTCCTAGCCGTAAACGATGGATACTAGGCG-CTGTGCGTATCGACCCGTGCAATG 99087 Query 372 CCGCAGCAAACGCAATAAGTATTCCACCTGGGGAGTA 408 | | ||| ||||| ||||||| || ||||||||||| Sbjct 99088 CTGTAGCTAACGCGTTAAGTATCCCGCCTGGGGAGTA 99124 Score = 262 bits (290), Expect = 9e-68 Identities = 298/397 (75%), Gaps = 2/397 (1%) Strand=Plus/Minus Query 13 AAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCG 72 |||| ||||||||| ||||||||||||||||||| || ||| || ||||||||||| Sbjct 133441 AAGCATCGGCTAACTCTGTGCCAGCAGCCGCGGTAAGACAGAGGATGCAAGCGTTATCCG 133382 Query 73 GAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTGAAAGGCTATGG 132 |||| | ||||||||||| || |||||||| || |||||| | || ||| | | || Sbjct 133381 GAATGATTGGGCGTAAAGCGTCTGTAGGTGGCTTTTTAAGTTCGCCGTCAAATCCCAGGG 133322 Query 133 CTCAACCCCGGGACTGCTTTTGAAACTGCAGGGCTAGAGTGCAGGAGGGGCAAGTGGAAT 192 |||||||| || || | |||||| | ||| |||| | | ||||||| ||||| Sbjct 133321 CTCAACCCTGGACAGGCGGTGGAAACTACCAAGCTGGAGTACGGTAGGGGCAGAGGGAAT 133262 Query 193 TCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTT 252 | | ||| |||||||||||||||||| || | | |||||||| |||||| || | Sbjct 133261 TTCCGGTGGAGCGGTGAAATGCGTAGAGATCGGAAAGAACACCAACGGCGAAAGCACTCT 133202 Query 253 GCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATTAGATACCC 312 ||||| | | |||||||||||| ||||||| ||||||| || ||||||||||||| Sbjct 133201 GCTGGGCCGACACTGACACTGAGAGACGAAAGCTAGGGGAGCGAATGGGATTAGATACCC 133142 Query 313 TGGTAGTCCACGCCGTAAACGATGAATACTAGGTGTCGGGGCGCAT-AAGTGCTCCGGTG 371 ||||||| ||||||||||||| |||||||| | | | ||| || | | | || Sbjct 133141 CAGTAGTCCTAGCCGTAAACGATGGATACTAGGCG-CTGTGCGTATCGACCCGTGCAATG 133083 Query 372 CCGCAGCAAACGCAATAAGTATTCCACCTGGGGAGTA 408 | | ||| ||||| ||||||| || ||||||||||| Sbjct 133082 CTGTAGCTAACGCGTTAAGTATCCCGCCTGGGGAGTA 133046 >seq7 Length=55601358 Score = 235 bits (260), Expect = 1e-59 Identities = 292/397 (74%), Gaps = 2/397 (1%) Strand=Plus/Plus Query 13 AAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCG 72 |||| ||||||||| ||||||||||||||||||| || ||| || ||||||||||| Sbjct 32534571 AAGCATCGGCTAACTCTGTGCCAGCAGCCGCGGTAAGACAGAGGATGCAAGCGTTATCCG 32534630 Query 73 GAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTGAAAGGCTATGG 132 |||| | |||| |||||| || | ||||||| || |||||| | || ||| | |||| Sbjct 32534631 GAATGATTGGGTGTAAAGCGTCCATAGGTGGGTTTTTAAGTTCGCCGTCAAATCCCATGG 32534690 Query 133 CTCAACCCCGGGACTGCTTTTGAAACTGCAGGGCTAGAGTGCAGGAGGGGCAAGTGGAAT 192 || ||||| || || | |||||| | ||| |||| | | ||||||| ||||| Sbjct 32534691 CTAAACCCTGGACAGGCGGTGGAAACTACCAAGCTGGAGTACGGTAGGGGCAGAGGGAAT 32534750 Query 193 TCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTT 252 | | ||| ||| |||||||| ||||| ||| | |||||||| |||||| || | Sbjct 32534751 TTCCGGTGGAGCAGTGAAATGTGTAGAGATTGAAAAGAACACCAACGGCGAAAGCACTCT 32534810 Query 253 GCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATTAGATACCC 312 ||||| | | |||||||||||| ||||||| ||||||| || ||||||||||||| Sbjct 32534811 GCTGGGCCGACACTGACACTGAGAGACGAAAGCTAGGGGAGCGAATGGGATTAGATACCC 32534870 Query 313 TGGTAGTCCACGCCGTAAACGATGAATACTAGGTGTCGGGGCGCATAAGTGC-TCCGGTG 371 ||||||| ||||||||||||| ||||||| |||| | || || | | | || Sbjct 32534871 CAGTAGTCCTAGCCGTAAACGATGGATACTAGACGTCGTG-CGTATCGACCCGTGCAATG 32534929 Query 372 CCGCAGCAAACGCAATAAGTATTCCACCTGGGGAGTA 408 | ||| |||| ||||||| | ||||||||||| Sbjct 32534930 TTGTAGCTAACGTGTTAAGTATCTCTCCTGGGGAGTA 32534966 Score = 134 bits (148), Expect = 3e-29 Identities = 185/256 (72%), Gaps = 2/256 (1%) Strand=Plus/Plus Query 154 GAAACTGCAGGGCTAGAGTGCAGGAGGGGCAAGTGGAATTCCTAGTGTAGCGGTGAAATG 213 |||||| | |||||||| | ||||||| |||||| | ||| |||||||||||| Sbjct 3399092 GAAACTACCAAGCTAGAGTATGGTAGGGGCAGAGGGAATTTCCGGTGGAGCGGTGAAATG 3399151 Query 214 CGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTTGCTGGACTGTAACTGACACTG 273 |||||| || | | |||||||| | ||| || || ||| | | |||||||||| Sbjct 3399152 CGTAGAGATCGGAAAGAACACCAACGATGAAAGCACTCTGTTGGGCCGACACTGACACTG 3399211 Query 274 AGGCTCGAAAGCGTGGGGAGCAAACAGGATTAGATACCCTGGTAGTCCACGCCGTAAACG 333 || ||||||| ||||||| || ||||||||||||| ||||||| | |||||||| Sbjct 3399212 AGAGACGAAAGCTAGGGGAGCGAATGGGATTAGATACCCCAGTAGTCCTAGTCGTAAACG 3399271 Query 334 ATGAATACTAGGTGTCGGGGCGCAT-AAGTGCTCCGGTGCCGCAGCAAACGCAATAAGTA 392 ||| |||||||| | | | ||| || | | | || | ||| |||| |||||| Sbjct 3399272 ATGGATACTAGGCG-CTGTGCGTATCGACCCGTGCAATGTTGTAGCTAACGTGTTAAGTA 3399330 Query 393 TTCCACCTGGGGAGTA 408 | ||||||||||||| Sbjct 3399331 TCGCACCTGGGGAGTA 3399346 Score = 77.0 bits (84), Expect = 8e-12 Identities = 63/77 (82%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 13 AAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCG 72 |||| ||||||||| ||||||||||||||||||| || ||| || ||||||||||| Sbjct 32590117 AAGCATCGGCTAACTCTGTGCCAGCAGCCGCGGTAAGACAGAGGATGCAAGCGTTATCCG 32590058 Query 73 GAATTACTGGGCGTAAA 89 |||| | | ||||| || Sbjct 32590057 GAATGATTAGGCGTTAA 32590041 >seq2498 Length=401262 Score = 208 bits (230), Expect = 2e-51 Identities = 252/340 (74%), Gaps = 10/340 (3%) Strand=Plus/Minus Query 2 ACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCT 61 ||| ||||| |||||||||||||||| |||||||||||||||||||| ||| |||||| Sbjct 124928 ACTCGAGGAAGAAGCCCCGGCTAACTCCGTGCCAGCAGCCGCGGTAAGACGGGGGGGGCG 124869 Query 62 AGCGTTATCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTG 121 || ||| | |||||| ||||||||||||||| |||||| ||| | || | ||| Sbjct 124868 AGTGTTCTTCGGAATGACTGGGCGTAAAGGGCACGTAGGCGGTGAATCGGGTTGAAAGTG 124809 Query 122 AAAGGCTATGGCTCAACCCCG-GGACTGCTTTTGAAAC---TGCAGGGCTAGAGTGCAGG 177 |||| | | | || | | ||| |||| | ||||| | || || ||||| Sbjct 124808 AAAGTC---GCCAAAAACTGGTGGAATGCTCTCGAAACCAATTCA---CTTGAGTGAGAC 124755 Query 178 AGGGGCAAGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAG 237 || || ||||||||| | |||||| ||| |||| || | || | | |||||| ||| Sbjct 124754 AGAGGAGAGTGGAATTTCGTGTGTAGGGGTTAAATCCGCAAATCTACGAAGGAACGCCAA 124695 Query 238 TGGCGAAGGCGGCTTGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAA 297 |||||||| ||| |||| || ||| ||| | ||||||| |||||||| || Sbjct 124694 AAGCGAAGGCAGCTCTCTGGGTCCCTACCGACGCTGGAGTGCGAAAGCATGGGGAGCGAA 124635 Query 298 CAGGATTAGATACCCTGGTAGTCCACGCCGTAAACGATGA 337 | ||||||||||||||||||||||| |||||||||||||| Sbjct 124634 CGGGATTAGATACCCTGGTAGTCCATGCCGTAAACGATGA 124595 >seq1 Length=36501346 Score = 188 bits (208), Expect = 2e-45 Identities = 233/319 (73%), Gaps = 0/319 (0%) Strand=Plus/Minus Query 13 AAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCG 72 |||| || |||||| || ||||||||||||||| || ||| || ||| ||||||| Sbjct 34744834 AAGCATCGACTAACTCTATGGCAGCAGCCGCGGTAACACAGAGGATGCAAGCATTATCCG 34744775 Query 73 GAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTGAAAGGCTATGG 132 |||| | ||||||||||| || |||||||| || |||||| || ||| | | || Sbjct 34744774 GAATGATTGGGCGTAAAGCGTNTGTAGGTGGCTTTTTAAGTTCCCTGTCAAATCCCAAGG 34744715 Query 133 CTCAACCCCGGGACTGCTTTTGAAACTGCAGGGCTAGAGTGCAGGAGGGGCAAGTGGAAT 192 ||||||| | || | |||||| | ||| |||| | | |||||||| ||||| Sbjct 34744714 CTCAACCATAGACAGGCGGTGGAAACTACCAAGCTGGAGTACTGTAGGGGCAAAGGGAAT 34744655 Query 193 TCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTT 252 | | ||| |||||||||||||||||| || | |||||||| |||||| || | Sbjct 34744654 TTCCGGTGGAGCGGTGAAATGCGTAGAGATCGAAAAGAACACCAACGGCGAAAGCACTCT 34744595 Query 253 GCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATTAGATACCC 312 ||||| | |||||||||||| ||||||| ||||||| || |||||| |||||| Sbjct 34744594 GCTGGGCCAAGACTGACACTGAGAGACGAAAGCTAGGGGAGCGAATGGGATTAAATACCC 34744535 Query 313 TGGTAGTCCACGCCGTAAA 331 ||||||| |||||||| Sbjct 34744534 CAGTAGTCCTAGCCGTAAA 34744516 >seq6 Length=37436759 Score = 122 bits (134), Expect = 2e-25 Identities = 232/339 (68%), Gaps = 2/339 (1%) Strand=Plus/Minus Query 6 GAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCG 65 ||||| |||| ||||||||| ||||||||||| | |||| | ||| | |||| Sbjct 35248194 GAGGAATAAGCATCGGCTAACTCTGTGCCAGCAGCTGTAGTAAGATAGAGGACACAAGCG 35248135 Query 66 TTATCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTGAAAG 125 |||||| |||| ||||||||||| || |||||||| || |||||| | || ||| Sbjct 35248134 TTATCCAGAATGGTTGGGCGTAAAGCGTCTGTAGGTGGCTTTTTAAGTTCGCCGTCAAAT 35248075 Query 126 GCTATGGCTCAACCCCGGGACTGCTTTTG-AAACTGCAGGGCTAGAGTGCAGGAGGGGCA 184 | | ||||||| || |||| | || ||||| | ||| |||| | | | ||||| Sbjct 35248074 CCCAGGGCTCAA-CCTTGGACAAGTGGTGAAAACTACCAAGCTGGAGTACGGTACGGGCA 35248016 Query 185 AGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAA 244 ||||| | ||| || |||||||||| |||| || | | |||||| |||| Sbjct 35248015 GAAAGAATTTCCGGTGGAGTGGTGAAATGCATAGAAATCGAAAAGGACACCAACAACGAA 35247956 Query 245 GGCGGCTTGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATT 304 || ||| | | | | ||| ||||| | ||||||| | |||| || | |||| Sbjct 35247955 AGCACTTTGTTAGGCCGACACTAACACTAAAAGACGAAAGCTAGAAGAGCGAATATGATT 35247896 Query 305 AGATACCCTGGTAGTCCACGCCGTAAACGATGAATACTA 343 | |||| | || ||| || |||||| |||||||||| Sbjct 35247895 AAATACTCCAATAATCCTAGCTGTAAACAATGAATACTA 35247857 >seq784 Length=763859 Score = 107 bits (118), Expect = 5e-21 Identities = 102/131 (78%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 13 AAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCG 72 |||| ||||||||| ||||||||||||||||||| || | | || ||||||||||| Sbjct 140802 AAGCATCGGCTAACTCTGTGCCAGCAGCCGCGGTAAGACAGANGATGCAAGCGTTATCCG 140861 Query 73 GAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTGAAAGGCTATGG 132 |||| | ||||||||||| || ||||||| || |||||| | || ||| | | || Sbjct 140862 GAATGATTGGGCGTAAAGCGTCTGTAGGTGACTTTTTAAGTTCGCCGTCAAATCCCAGGG 140921 Query 133 CTCAACCCCGG 143 |||||||| || Sbjct 140922 CTCAACCCTGG 140932 >seq8 Length=45727239 Score = 95.1 bits (104), Expect = 3e-17 Identities = 93/120 (78%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 20 GGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGAATTAC 79 |||||||| ||||||||||||||||||| || ||| || ||||||||||||||| | Sbjct 31925584 GGCTAACTTTGTGCCAGCAGCCGCGGTAAGACAGAGGATGCAAGCGTTATCCGGAATGAT 31925643 Query 80 TGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTGAAAGGCTATGGCTCAACC 139 |||| |||||| || ||||||| || |||||| | || ||| | ||||||||| Sbjct 31925644 TGGGTGTAAAGCGTCTATAGGTGGCTTTTTAAGTTCGCCGTCAAATCTCAGGGCTCAACC 31925703 >seq3 Length=12950713 Score = 93.3 bits (102), Expect = 1e-16 Identities = 81/101 (80%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 13 AAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCG 72 |||| ||||||||| |||||||||| |||||||| || ||| || ||||||||||| Sbjct 3642635 AAGCATCGGCTAACTCTGTGCCAGCAGTCGCGGTAAGACAAAGGATGCAAGCGTTATCCG 3642694 Query 73 GAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGT 113 |||| | ||||| ||||| || ||||||| || |||||| Sbjct 3642695 GAATGATTGGGCTTAAAGCGTCTGTAGGTGACTTTTTAAGT 3642735 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203169932032