Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vigna_20radiata_20var._20radiata_20[refseq_20GCF_5F000741045.1_20201 5-10-28] 2,499 sequences; 463,637,892 total letters Query= AAMG01002194.1 Length=319 Score E Sequences producing significant alignments: (Bits) Value seq2122 289 5e-76 seq2499 122 2e-25 seq1155 122 2e-25 seq2498 77.0 6e-12 >seq2122 Length=2452 Score = 289 bits (320), Expect = 5e-76 Identities = 262/323 (81%), Gaps = 5/323 (2%) Strand=Plus/Minus Query 1 AGTGCACATGGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATA 60 |||||| |||||||||||||||||||| |||||||||||||||||||||||| ||||| | Sbjct 1130 AGTGCATATGGTGGATGCCTTGGCGATCACAGGCGATGAAGGACGTAGTAGCCTGCGAAA 1071 Query 61 AGCTGCGGGGAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCC-GG 119 |||| ||||||| ||||||| |||||||||| |||| ||||||||||||||||| Sbjct 1070 AGCTACGGGGAGCTGGCAAACAAGCTTTGATCCGTAGATATCCGAATGGGGAAACCCACT 1011 Query 120 CCCTTTGGG-TCATTGCATGCTGAATACATAGG-TATGCAAAGCGAACGCGGCGAACTGA 177 |||| |||| || | |||||||||||||| | |||||||| || ||||||| Sbjct 1010 CCCTCTGGGAGTATCCCTGGCTGAATACATAGGCCAGTGGAAGCGAACCGGGTGAACTGA 951 Query 178 AACATCTAAGTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGA 237 ||||||| ||||||| ||||||||||||||||||||||||| ||||||||||||||||| Sbjct 950 AACATCTCAGTAGCTCGAGGAAAAGAAATCAACCGAGATTCCGAAAGTAGTGGCGAGCGA 891 Query 238 AATGGGATGAGCCTTTACGAGATAG-TTGAATTGATAGTGGAATCCTCTGGAAATAGGAG 296 ||| ||| ||||||||||| ||| || | |||| | ||| |||||| | Sbjct 890 AATCGGAAGAGCCTTTACGTTTTAGCATGCA-AGATAATCGAAGGGGATGGAAAGCCCCG 832 Query 297 CCATAGCGGGTGATAGCCCCGTA 319 || |||| ||||||||||| ||| Sbjct 831 CCGTAGCAGGTGATAGCCCTGTA 809 >seq2499 Length=151271 Score = 122 bits (134), Expect = 2e-25 Identities = 178/246 (72%), Gaps = 12/246 (5%) Strand=Plus/Plus Query 8 ATGGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATAAGCTGCG 67 ||||||||| ||| ||| | || ||| ||||| ||||||| ||| | ||| || Sbjct 102214 ATGGTGGATACCTAGGCACCCAGAGACGAGGAAGGGCGTAGTAAGCGACGAAATGCTTCG 102273 Query 68 GGGAGTGAGCAAACACACTTTGATCCGCAGATTTCCGA-ATGGGGAAACCCGGCCCTTTG 126 |||||| | ||| | | | |||||| ||||| |||| || || |||| ||| Sbjct 102274 GGGAGTT-GAAAATAAGCGTAGATCCGGAGATTCCCGATATAGGTCAACC------TTTC 102326 Query 127 GGTCATTGCATGCTGAATACATAGGTATGCAA-AGCGAACGCGGCGAACTGAAACATCTA 185 | | ||| |||||||| || || | |||| || ||| || |||||||||||||| Sbjct 102327 GAAC--TGC-TGCTGAATCCACGGGCAGGCAAGAGACAACCTGGTGAACTGAAACATCTT 102383 Query 186 AGTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGAT 245 |||||| ||||||||||| ||| | ||||||| ||||| |||||||||||||||| Sbjct 102384 AGTAGCCAGAGGAAAAGAAAGCAAAAGCGATTCCCGTAGTAGCGGCGAGCGAAATGGGAG 102443 Query 246 GAGCCT 251 ||||| Sbjct 102444 CAGCCT 102449 Score = 122 bits (134), Expect = 2e-25 Identities = 178/246 (72%), Gaps = 12/246 (5%) Strand=Plus/Minus Query 8 ATGGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATAAGCTGCG 67 ||||||||| ||| ||| | || ||| ||||| ||||||| ||| | ||| || Sbjct 129956 ATGGTGGATACCTAGGCACCCAGAGACGAGGAAGGGCGTAGTAAGCGACGAAATGCTTCG 129897 Query 68 GGGAGTGAGCAAACACACTTTGATCCGCAGATTTCCGA-ATGGGGAAACCCGGCCCTTTG 126 |||||| | ||| | | | |||||| ||||| |||| || || |||| ||| Sbjct 129896 GGGAGTT-GAAAATAAGCGTAGATCCGGAGATTCCCGATATAGGTCAACC------TTTC 129844 Query 127 GGTCATTGCATGCTGAATACATAGGTATGCAA-AGCGAACGCGGCGAACTGAAACATCTA 185 | | ||| |||||||| || || | |||| || ||| || |||||||||||||| Sbjct 129843 GAAC--TGC-TGCTGAATCCACGGGCAGGCAAGAGACAACCTGGTGAACTGAAACATCTT 129787 Query 186 AGTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGAT 245 |||||| ||||||||||| ||| | ||||||| ||||| |||||||||||||||| Sbjct 129786 AGTAGCCAGAGGAAAAGAAAGCAAAAGCGATTCCCGTAGTAGCGGCGAGCGAAATGGGAG 129727 Query 246 GAGCCT 251 ||||| Sbjct 129726 CAGCCT 129721 >seq1155 Length=2458243 Score = 122 bits (134), Expect = 2e-25 Identities = 178/246 (72%), Gaps = 12/246 (5%) Strand=Plus/Plus Query 8 ATGGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATAAGCTGCG 67 ||||||||| ||| ||| | || ||| ||||| ||||||| ||| | ||| || Sbjct 572037 ATGGTGGATACCTAGGCACCCAGAGACGAGGAAGGGCGTAGTAAGCGACGAAATGCTTCG 572096 Query 68 GGGAGTGAGCAAACACACTTTGATCCGCAGATTTCCGA-ATGGGGAAACCCGGCCCTTTG 126 |||||| | ||| | | | |||||| ||||| |||| || || |||| ||| Sbjct 572097 GGGAGTT-GAAAATAAGCGTAGATCCGGAGATTCCCGATATAGGTCAACC------TTTC 572149 Query 127 GGTCATTGCATGCTGAATACATAGGTATGCAA-AGCGAACGCGGCGAACTGAAACATCTA 185 | | ||| |||||||| || || | |||| || ||| || |||||||||||||| Sbjct 572150 GAAC--TGC-TGCTGAATCCACGGGCAGGCAAGAGACAACCTGGTGAACTGAAACATCTT 572206 Query 186 AGTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGAT 245 |||||| ||||||||||| ||| | ||||||| ||||| |||||||||||||||| Sbjct 572207 AGTAGCCAGAGGAAAAGAAAGCAAAAGTGATTCCCGTAGTAGCGGCGAGCGAAATGGGAG 572266 Query 246 GAGCCT 251 ||||| Sbjct 572267 CAGCCT 572272 >seq2498 Length=401262 Score = 77.0 bits (84), Expect = 6e-12 Identities = 63/77 (82%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 169 GCGAACTGAAACATCTAAGTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGT 228 |||||||||||||||| ||||||| ||||| |||||||||||||| || ||||| Sbjct 152402 GCGAACTGAAACATCTTAGTAGCTAAAGGAAGGGAAATCAACCGAGACCCCGTTAGTAGC 152343 Query 229 GGCGAGCGAAATGGGAT 245 ||||||||| | |||| Sbjct 152342 GGCGAGCGAGAGCGGAT 152326 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 918377049184