Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vigna_20radiata_20var._20radiata_20[refseq_20GCF_5F000741045.1_20201 5-10-28] 2,499 sequences; 463,637,892 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq8 336 7e-90 seq1413 262 1e-67 seq881 230 8e-58 seq2498 78.8 3e-12 >seq8 Length=45727239 Score = 336 bits (372), Expect = 7e-90 Identities = 317/397 (80%), Gaps = 8/397 (2%) Strand=Plus/Minus Query 9 TTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATGGT 68 |||| || ||| ||||||| | ||||| |||| | |||||||||| | |||||| | Sbjct 27378160 TTTGTTCCACATGAGATTTTTTTTCTCATTGAGCTCATCTTAGGACACTTACGTTATCTT 27378101 Query 69 TTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATCGG 128 |||||||||||||||||| |||||||||| |||||| |||||||| || |||| || | Sbjct 27378100 TTAACAGATGTGCCGCCCAAGCCAAACTCTCCACCTAACAATGTCTTCCGCCCGAATTGA 27378041 Query 129 CCCGC-GAAG--GACCTTAACGCCAGAAAATGGTCGGTGAAGACCAGT-TCCGCTTCATT 184 || | |||| |||||| ||| || || || || || | |||| |||| Sbjct 27378040 CCGACTGAAGCTGACCTTGGGACCAAAAGGAGG--GGCAGAGCCCCGCCTCCGATTCACG 27377983 Query 185 GATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAA-CGGCTCCCAC 243 || ||||||||| |||| ||||| |||||||||||||||| | | | ||||| || Sbjct 27377982 GAATAAGTAAAATAACGTTAAGG-TAGTGGTATTTCACTTTAGTTGTTTTCTGCTCCAAC 27377924 Query 244 TTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTC 303 |||| ||||||||||||||| |||||||||||| || ||||||| |||||||||| |||| Sbjct 27377923 TTATCCTACACCTCTCAAGTTATTTCACAAAGTTGGCCTAGAGTTAAGCTCAACAAGGTC 27377864 Query 304 TTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAG 363 ||||||||| |||||||| ||||||| | |||||||| ||||||||| ||||||||||| Sbjct 27377863 TTCTTTCCCAGCTGATTCTGCCAAGCTTGCTCCCTTGGTTGTGGTTTCACTAGATAGTAG 27377804 Query 364 ATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCG 400 | |||||||||| |||||| ||||||| ||||||||| Sbjct 27377803 ACAGGGACAGTGTGAATCTTGTTAATCAATTCATGCG 27377767 >seq1413 Length=1568 Score = 262 bits (290), Expect = 1e-67 Identities = 150/153 (98%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 381 CTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGA 440 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 CTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGA 60 Query 441 GAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTC 500 |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 61 GAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTACTTGAATTTCTTCACTTTGACATTC 120 Query 501 AGAGCACTGGGCAGAAATCACATTGCGTCAACA 533 ||||||||||||||||||||||||| ||||||| Sbjct 121 AGAGCACTGGGCAGAAATCACATTGTGTCAACA 153 >seq881 Length=1794 Score = 230 bits (254), Expect = 8e-58 Identities = 139/147 (95%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 358 TAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGA 417 |||||||||||||||| |||||||||||| |||||||||||||||||||||||| ||||| Sbjct 147 TAGTAGATAGGGACAGAGGGAATCTCGTTGATCCATTCATGCGCGTCACTAATTGGATGA 88 Query 418 CGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGT 477 ||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||| | Sbjct 87 CGAGGCATTTGGCTACCTTAAAAGAGTCATAGTTACTCCTGCCGTTTACCCGCGCTTGCT 28 Query 478 TGAATTTCTTCACTTTGACATTCAGAG 504 ||||| ||||||| ||||||||||||| Sbjct 27 TGAATCTCTTCACGTTGACATTCAGAG 1 >seq2498 Length=401262 Score = 78.8 bits (86), Expect = 3e-12 Identities = 81/106 (76%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 369 GACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTG 428 ||||| ||| |||||| |||||| ||| ||| ||| ||| ||| ||| |||| Sbjct 150293 GACAGCGGGGCAGTCGTTACACCATTCGTGCAGGTCGCTACTTATGCGACAAGGAATTTC 150352 Query 429 GCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTT 474 ||||||||| || ||| | ||||||| |||||||||||| | |||| Sbjct 150353 GCTACCTTAGGACAGTTAGAGTTACTGCCGCCGTTTACCGGGGCTT 150398 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1635159136352