Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vigna_20radiata_20var._20radiata_20[refseq_20GCF_5F000741045.1_20201 5-10-28] 2,499 sequences; 463,637,892 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq1 426 5e-117 seq1348 318 2e-84 seq2364 201 3e-49 >seq1 Length=36501346 Score = 426 bits (472), Expect = 5e-117 Identities = 405/509 (80%), Gaps = 19/509 (4%) Strand=Plus/Minus Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60 ||| |||||| |||||| | || ||| |||||| ||| |||||||||||||||| | Sbjct 25137918 GTAGTCATTCTAATTACCAAACTCAAT-GAGCCCGATATTGTTATTTATTGTCACTACTT 25137860 Query 61 CCCCGTGTCGGGATTGGGTAATTT-GCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGT 119 |||| |||| ||||||||||||| | ||| | |||||||||||||||| ||||| | Sbjct 25137859 CCCCATGTCAAGATTGGGTAATTTCGTGCGGTTAATGCCTTCCTTGGATGTAGTAGCTAT 25137800 Query 120 TTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGT 179 |||||||||||||||||| ||||||||| |||||| || | |||||| ||| ||||| Sbjct 25137799 TTCTCAGGCTCCCTCTCCAAAATCGAACCTTAATTCTCCATCACCCGTCACTACTATGGT 25137740 Query 180 AGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGC 239 ||||||| || |||||| |||||||||||| ||| |||||||||||| ||||| ||| Sbjct 25137739 AGGCCACCAT-ATACCATTGAAAGTTGATAGAGCAAAAATTTGAATGATGCATCGTAGGC 25137681 Query 240 TCAA-GGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGG--------AGCCCCGAA 290 ||| || | ||| || || |||||| |||||||| ||| | || ||| | Sbjct 25137680 ACAAGGGTCGTGCAATCCGACGAGTTATCATGAATCATCAAAGCAACAGACAGACCCTA- 25137622 Query 291 GGGCGTTGGTTTTTTATCTAATAAATACACCCCTTCC-GAAGTCGGGGTTTTTAGCATGT 349 ||| | |||||||||||| || || ||||||| ||||||||||||| | ||| || Sbjct 25137621 ---CGTCGAGCTTTTATCTAATACATGCATCCCTTCCAGAAGTCGGGGTTTATTGCACGT 25137565 Query 350 ATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAAC 409 ||||||||||||||||| ||||||||||| ||||| || ||| |||||| |||| ||||| Sbjct 25137564 ATTAGCTCTAGAATTACTACGGTTATCCAAGTAGT-AGATACCATCAAACAAACTATAAC 25137506 Query 410 TGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATT-GCTTATACTTAGACATGCATG 468 |||||||||||||||||| || |||||| || | ||| | | ||||||| | ||||| | Sbjct 25137505 TGATTTAATGAGCCATTCACAATTTCACAGTCTGAATTAGTTCATACTTACAGATGCACG 25137446 Query 469 GCTTAATCTTTGAGACAAGCATATGACTA 497 |||||||||| ||||||| ||||||||| Sbjct 25137445 ACTTAATCTTTAAGACAAGTATATGACTA 25137417 Score = 174 bits (192), Expect = 5e-41 Identities = 210/280 (75%), Gaps = 12/280 (4%) Strand=Plus/Plus Query 144 GAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAGGCCACTATCCTACCATCGAAAG 203 |||||||||||| || | |||| | ||||||||||| |||| ||||||||||||||| Sbjct 11506638 GAACCCTAATTCTCCATCACCCTTCACCACCATGGTAGGTCACTGTCCTACCATCGAAAG 11506697 Query 204 TTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCTCAAG-GCCATGCGATTCGTTAAG 262 |||||||| |||||||||||||| ||||||| | ||| | | || ||| | || Sbjct 11506698 TTGATAGGATAGAAATTTGAATGATGCATCGCCAGTATAAGAGTCGTGTGATCTGACGAG 11506757 Query 263 TTATTATGAATCACCAAGGAGCCCCGAAGGGCGTTGGTTTTTTATCTAATAAATACA-CC 321 |||| |||||||| ||| ||| || | ||| | |||||||||||||||| | || Sbjct 11506758 TTATCATGAATCATCAA--AGCACC---AGACGTCGACCTTTTATCTAATAAATATATCC 11506812 Query 322 CCTTCCGAAGTCGGGGTTTTTAGCATGTATTAGCTCTAGAATTACCACGGTTATCCATGT 381 | ||| ||| || | ||| | ||||||||| |||||||||||| | ||||||| || Sbjct 11506813 CTTTCAGAAATCAGACTTTGTTACATGTATTAACTCTAGAATTACTAGAGTTATCCGAGT 11506872 Query 382 AGTAAGGTACTAT----CAAATAAACGATAACTGATTTAA 417 ||||| ||| || | || |||| ||||| ||| ||| Sbjct 11506873 AGTAA-ATACCATCGAACGAACAAACTATAACCGATGTAA 11506911 Score = 154 bits (170), Expect = 4e-35 Identities = 133/162 (82%), Gaps = 2/162 (1%) Strand=Plus/Minus Query 119 TTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGG 178 ||||||||||||||||||| ||||||||| |||||| || | ||||||| ||| |||| Sbjct 29378018 TTTCTCAGGCTCCCTCTCCAAAATCGAACCTTAATTCTCCATCACCCGTTACTACTATGG 29377959 Query 179 TAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGG 238 |||||||| || |||||| |||||||||||| |||||||||||||||| |||| || Sbjct 29377958 TAGGCCACCAT-ATACCATTGAAAGTTGATAGAGCAGAAATTTGAATGATGCATCTTAGG 29377900 Query 239 CTCAA-GGCCATGCGATTCGTTAAGTTATTATGAATCACCAA 279 | ||| || | |||||| || |||||| |||||||| ||| Sbjct 29377899 CACAAGGGTCGTGCGATCCGACGAGTTATCATGAATCATCAA 29377858 Score = 104 bits (114), Expect = 7e-20 Identities = 97/121 (80%), Gaps = 2/121 (2%) Strand=Plus/Minus Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60 ||| |||||| |||||| |||| ||| ||||| |||| |||||||||||||||| | Sbjct 29378515 GTAGTCATTCTAATTACCAGACTCAAT-GAGCCTGGTATTGTTATTTATTGTCACTACTT 29378457 Query 61 CCCCGTGTCGGGATTGGGTAATT-TGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGT 119 |||| |||| ||||||||||||| ||| | |||||||||||||||| ||||| || Sbjct 29378456 CCCCATGTCAGGATTGGGTAATTCCATGCGGTTAATGCCTTCCTTGGATGTAGTAGCTGT 29378397 Query 120 T 120 | Sbjct 29378396 T 29378396 >seq1348 Length=554905 Score = 318 bits (352), Expect = 2e-84 Identities = 355/466 (76%), Gaps = 16/466 (3%) Strand=Plus/Minus Query 43 TATTTATTGTCACTACCTCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCC 102 ||||||||||||||||||| ||||| ||||||||||||||| ||| || |||||||| Sbjct 183291 TATTTATTGTCACTACCTCTACGTGTTAGGATTGGGTAATTTGTGCGTCTATTGCCTTCC 183232 Query 103 TTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTA 162 ||| ||||| ||||||| ||||| || ||| | ||||||||||| || | Sbjct 183231 ATGG------TAGCCATTTCTCAAGCTCCAAGTCTTGAACCAAACCCTAATTCTTTGTCA 183178 Query 163 CCCGTTGAT-ACCATGGTAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTT 221 | || || |||||||||||||| |||||||||||| |||||||||| ||| |||||| Sbjct 183177 CAT-TTCATCACCATGGTAGGCCATTATCCTACCATCAAAAGTTGATAAGGCGGAAATTC 183119 Query 222 GAATGAACCATCGCCGGCTCAAG-GCCATGCGATTCGTTAAGTTATTATGAATCACCAAG 280 ||||| ||| | | | |||| | | ||| |||| ||||||| |||||| ||||| Sbjct 183118 GAATGGTGCATTGTCAACACAAGAGTCGTGCAATTCAACAAGTTATCATGAATAACCAAA 183059 Query 281 GAGCCCCGAAGGGC----GTTGGTTTTTTATCTAATAAATACA-CCCCTTCCGAAGTCGG 335 | | || || || | | |||||| |||||||| || | ||| ||||| | Sbjct 183058 GTAGTAGGCAGAGCTTGTGTCGATCTTTTATGTAATAAATGCATCATTTTCAGAAGTTAG 182999 Query 336 GGTTTTTAGCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATC 395 | ||| | ||| ||||||||||||||||||| | | |||| | ||||| || ||| || Sbjct 182998 GATTTGTTGCACGTATTAGCTCTAGAATTACTATGATTATTTAAGTAGT-AGATACCATT 182940 Query 396 AAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATT-GCTTATA 454 |||||||| |||| |||||||||||| |||||| |||||||| | | ||| | | ||| Sbjct 182939 AAATAAACTATAATTGATTTAATGAGTCATTCGTAGTTTCACACTCTGAATTAGTTCATA 182880 Query 455 CTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTG 500 |||| ||||||||||| || |||||||||||| ||||||||| ||| Sbjct 182879 CTTACACATGCATGGCATAGTCTTTGAGACAAACATATGACTTCTG 182834 >seq2364 Length=1401266 Score = 201 bits (222), Expect = 3e-49 Identities = 321/453 (71%), Gaps = 16/453 (4%) Strand=Plus/Minus Query 43 TATTTATTGTCACTACCTCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCC 102 || |||||||||| |||||||| | | || | ||||||||| | | || |||| Sbjct 524078 TACTTATTGTCACCACCTCCCCATATTAGG---GAGTAATTTGCAAACTTACTACCTTGG 524022 Query 103 TTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTA 162 ||||||||||||| | ||||| ||| ||| | | ||| ||||| |||||| || | Sbjct 524021 TTGGATGTGGTAGTCATTTCTTAGGTCTCCTTTTTGAAATTGAACCATAATTCATTGTCA 523962 Query 163 CCCGTTGATACCATGGTAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTG 222 | || || || ||||||||||||| || ||||||||||||||| ||| ||||||| Sbjct 523961 TCTGTCACCACTATAGTAGGCCACTATCATAATATCGAAAGTTGATAGTGCATAAATTTG 523902 Query 223 AATGAACCATCGCCGGCTCAA-GGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGG 281 ||||| |||| | | ||| || |||| ||| | |||||| |||||| | ||| | Sbjct 523901 AATGATGCATCATTGACACAAGGGTCATGTGATCCAAAGAGTTATCATGAATAATCAAAG 523842 Query 282 ----AGCCCCGAAGGGCGTTGGT-TTTTTATCTAATAAATACA-CCCCTTCCGAAGTCGG 335 || | | | | | |||||||| |||||| ||| || ||| |||||| Sbjct 523841 CAATAGGCAAAACCTACATAAATATTTTTATCCAATAAAGACATTCCTTTCAAAAGTCGA 523782 Query 336 GGTTTTTAGCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATC 395 ||||| | | ||||||||| ||||||||||| | | |||| | | || ||| Sbjct 523781 GGTTTGTTGTATGTATTAGTTCTAGAATTACTATGATTATTCGAGCCATA----CCTACA 523726 Query 396 AAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCT-TATA 454 |||||||| |||||| ||||||| || ||||| ||||| | || | ||| | ||| Sbjct 523725 AAATAAACTATAACTAATTTAATAAGTCATTCATAGTTTAAAAGTTTGAATTATTACATA 523666 Query 455 CTTAGACATGCATGGCTTAATCTTTGAGACAAG 487 ||| |||| ||||||||| ||||||| ||||| Sbjct 523665 TTTATACATTCATGGCTTAGTCTTTGA-ACAAG 523634 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1510362255104