Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vigna_20radiata_20var._20radiata_20[refseq_20GCF_5F000741045.1_20201 5-10-28] 2,499 sequences; 463,637,892 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq1493 159 3e-34 seq3 132 4e-26 >seq1493 Length=4971659 Score = 159 bits (176), Expect = 3e-34 Identities = 553/848 (65%), Gaps = 30/848 (4%) Strand=Plus/Plus Query 61096 ATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCCAAAGAC 61155 |||||||| || || ||||| ||||||||||||| ||||||||| || | || | ||| Sbjct 4757024 ATGTACAAGAAAGCAGAAGCCTCCTTCTGGACGGCGGAGGAGGTGGACCTCTCGCAGGAC 4757083 Query 61156 ATGAATGACTGGGA-GCGTTTATCGAGCGGTGAACAACATTTCATTAAACATGTGTTGGC 61214 || | | ||||| | | ||| ||| ||| || | |||||| | | ||||| | || Sbjct 4757084 ATCAGTCACTGGAACACTCTTACCGA-CGGCGAGCGCCATTTCGTCACCCATGTCCTTGC 4757142 Query 61215 GTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACGTTTCGCGCAGGA 61274 ||||| || || || ||||| ||||| || ||| | | ||||| | |||| Sbjct 4757143 CTTCTTCGCTGCCTCCGACGGCATCGTACTCGAAAATCTTGCCGGCCGTTTTATGAAGGA 4757202 Query 61275 GGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTCCA 61334 ||| || || || ||||| || || |||||||||||||| || || ||||| | || Sbjct 4757203 GGTCCAGGTCTCCGAGGCTCGCGCCTTTTACGGCTTCCAGATCGCTATAGAGAACATTCA 4757262 Query 61335 CTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGCGGGCGGAACGTGAA-- 61392 ||| ||||||||||| | ||| |||| || ||||| | || || | | || Sbjct 4757263 CTCCGAGATGTACAGCCTCCTCCTCGAAACCTACATAA--AAGACTCCGTAGAGAAAAGC 4757320 Query 61393 CGATTGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGGCCTTC 61452 || | || | ||||| || || || || || | ||| || | |||||| || Sbjct 4757321 CGTCTCTTTCACGCCATTGACACCATTCCCTGCGTCACCAAGAAGGCCAACTGGGCCCTC 4757380 Query 61453 AATTGGATCACCAGTACAACGGCTACATTTGGTGAACGATTGCTGGCATTTGCGGTGGTC 61512 ||||| | | | | || | | || | || || | | || || || ||| Sbjct 4757381 CGCTGGAT--CGACTCCTCCGAGT-CCTTCGCCGAGCGCCTCGTCGCCTTCGCCTGCGTC 4757437 Query 61513 GAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTT 61572 ||||| | || ||| ||| ||| | | ||||||||| | |||||||| || || Sbjct 4757438 GAGGGAATCTTCTTCTCCGGAAGCTTTTGCTCCATCTTTTGGCTCAAGAAACGGGGCCTC 4757497 Query 61573 ATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGGGCATGCATTGTGAT 61632 ||||| || || || ||| ||| || | || || || |||||||| | || || || Sbjct 4757498 ATGCCAGGACTCACTTTCTCCAACGAACTCATCTCCCGAGACGAGGGTCTCCACTGCGAC 4757557 Query 61633 TTTGCTGTTTTGCTATTCAAACGCTATC-TGGTGA--ATCGTCCGTCGGAGGAGCGTGTG 61689 || ||| |||| | || ||||| || || | ||| | |||||||| ||| Sbjct 4757558 TTCGCTTGCCTGCTCT----ACTCTATCATGCGGACCAAGCTCC--CCGAGGAGCGCGTG 4757611 Query 61690 GGTGAGATTGTTCGTGAGGCGGTAACTATCGAACAGGAATT--TCTGACTGACGCTTTGC 61747 | ||||| || || || || || || || ||| || |||| ||||| | | Sbjct 4757612 AGGGAGATCGTGCGCGATGCTGTTGACATTGAGAGGGAGTTCGTCTG--CGACGCGCTTC 4757669 Query 61748 CCGTCTCACTCATCGGCATGAATTGTGGACTAATGTCGCAGTATATTGAATTTGTTGCCG 61807 | | | | | || ||||| | | | ||| ||||| ||||| |||||||| | Sbjct 4757670 CTTGCGCGTTGGTGGGGATGAACGGGGCCTTGATGAGTCAGTACATTGAGTTTGTTGCTG 4757729 Query 61808 ACCGTCTGTTGGTCGAT----TTGGGTATGAAGCGGATCTATAATACGAAAAACCCATTT 61863 | | |||| ||| | |||||| | | | | || ||| | | |||||||| Sbjct 4757730 A---TAGGTTGCTCGGTGCGCTTGGGTGCG-GGAAGGTGTACAATGTGCAGAACCCATTC 4757785 Query 61864 GATTTCATGGACATGATTTCGCTGGATGGCAAGACGAATTTTTTCGAGAAACGTGTAGGC 61923 |||| ||||| ||||||||||| | || ||||| || || |||||||| || || || Sbjct 4757786 GATTGGATGGAGCTGATTTCGCTGCAGGGGAAGACCAACTTCTTCGAGAAGCGCGTGGGG 4757845 Query 61924 GACTATCA 61931 || || || Sbjct 4757846 GAGTACCA 4757853 >seq3 Length=12950713 Score = 132 bits (146), Expect = 4e-26 Identities = 365/547 (67%), Gaps = 13/547 (2%) Strand=Plus/Plus Query 61096 ATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCCAAAGAC 61155 |||||||| || || ||||| || |||||||| | || ||||| || | ||| ||||| Sbjct 6095208 ATGTACAAGAAAGCCGAAGCCTCTTTCTGGACAGCCGAAGAGGTTGACCTCTCCCAAGAC 6095267 Query 61156 ATGAATGACTGGGAG-CGTTTATCGAGCGGTGAACAACATTTCATTAAACATGTGTTGGC 61214 | ||||||| | | | ||| ||| || | || ||||| | || || | || Sbjct 6095268 CTCCGCCACTGGGACTCCCTCACCGA-CGGCGAGCGCCACTTCATCACCCACGTCCTCGC 6095326 Query 61215 GTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACGTTTCGCGCAGGA 61274 ||||||||||| || ||||| ||||| || || | | || ||| | |||| Sbjct 6095327 CTTCTTTGCCGCCTCCGACGGCATCGTTCTCGAAAACCTTGCCGCCCGCTTCATGAAGGA 6095386 Query 61275 GGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTCCA 61334 | |||| | ||||| ||| |||||||||||||||||| ||||| ||||| |||| Sbjct 6095387 AATCCAAGCCGCCGAGGCTCGTGCTTTCTACGGCTTCCAGATCGCCATCGAGAACATCCA 6095446 Query 61335 CTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGCGGGCGGAACGTGAACG 61394 ||| |||||||||||| | ||| | || || ||||||| || | ||| ||| Sbjct 6095447 CTCCGAGATGTACAGTCTCCTCTTGGAAACCTACATCAAAGACTCCACCGAA-AAGAATC 6095505 Query 61395 AT-TGTTCAATGCCATCGAGACGATACCGGCGGTGAAGC--GGAAAGCGGATTGGGCCTT 61451 || ||||| ||| |||| || || || | ||| || ||| || | |||||||| Sbjct 6095506 ATCTGTTCCGCGCCGTCGATACCATCCC--CTGTGTCGCCAAGAAGGCCCAATGGGCCTT 6095563 Query 61452 CAATTGGATCACCAGTACAACGGCTACATTTGGTGAACGATTGCTGGCATTTGCGGTGGT 61511 ||||| | | || || || | || | || || | | || || || || Sbjct 6095564 GCGCTGGAT--CGATGCCACCGACT-CCTTCGCCGAGCGCCTCGTCGCCTTCGCCTGCGT 6095620 Query 61512 CGAGGGTGTATTTTTCAGTGG-ATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGAC 61570 |||||| | || ||| || | | | || | | || |||||| | ||||| ||||| Sbjct 6095621 CGAGGGAATCTTCTTCTCCGGCAGCTTCTG-CTCGATATTTTGGCTCAAGAAGCGTGGCT 6095679 Query 61571 TTATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGGGCATGCATTGTG 61630 | ||||||||||| |||||| ||| || | ||||| || || || || | || || | Sbjct 6095680 TGATGCCCGGTCTCACCTTCTCCAACGAACTCATATCGCGAGATGAAGGGCTCCACTGCG 6095739 Query 61631 ATTTTGC 61637 | || || Sbjct 6095740 ACTTCGC 6095746 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397555891445360