Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vigna_20radiata_20var._20radiata_20[refseq_20GCF_5F000741045.1_20201 5-10-28] 2,499 sequences; 463,637,892 total letters Query= NC_023503.1 Length=48800 Score E Sequences producing significant alignments: (Bits) Value seq1557 199 1e-46 >seq1557 Length=1724 Score = 199 bits (220), Expect = 1e-46 Identities = 542/820 (66%), Gaps = 20/820 (2%) Strand=Plus/Minus Query 2100 TCCAATGATGAACATCATCAACGGTGGTTCTCACTCAGACGCTCCAATCGCTTTCCAAGA 2159 ||| |||||||| || || || || || || || || || ||||| || ||||| ||||| Sbjct 1692 TCCTATGATGAATATAATTAATGGAGGATCGCATTCTGATGCTCCTATTGCTTTTCAAGA 1633 Query 2160 ATTTATGATTGTACCTGCTGGTGCACCAACATTCAAAGAAGCGCTTCGTTGGGGTGCTGA 2219 |||||||||| | |||| ||| | || | | || | | ||| | || Sbjct 1632 ATTTATGATTATGCCTGTAAAGGCAAATAATTTTACGCATGCTATGCAAATGGGAACAGA 1573 Query 2220 AATCTTCCACGCGCTTAAGAAAATCCTTAAA-GAACGTGGACTTGAA-ACAGCCGTAGGT 2277 ||| || ||| | |||| |||| ||| | || | ||| |||| || || || ||| Sbjct 1572 AATTTTTCAC-CATTTAAAAAAAGTGTTACATGATAGAGGA-TTGAGTACTGCTGTTGGT 1515 Query 2278 GACGAAGGTGGTTTCGCACCTCGTTTCGACGGAACTGAAGATGGTGTTGAAACTATCATC 2337 || ||||| || || || ||| || || ||||| ||||||| | ||||| || || Sbjct 1514 GATGAAGGAGGATTTGCTCCTACGTTGGAAGGAACAGAAGATGCATTGGAAACAATTATG 1455 Query 2338 AAAGCTATCGAAGCTGCTGGATATGTACCAGGTAAAGACGTATTTATCGGACTTGACTGT 2397 || || || | ||| ||||||| | |||| ||||| ||| | || | | || ||| Sbjct 1454 AATGCAATTACAAATGCCGGATATGAAGCAGGAAAAGAAGTAATGATAGCTTTAGATTGT 1395 Query 2398 GCATCATCTGAATTCTACGATGCAGAACGTAAAGTTTACGACTACACTAAATTTGAAGG- 2456 || || | || || || || || | ||||| |||| || ||||| |||||||| Sbjct 1394 GCTTCTGCAGAGTTTTATGAA----AATGAAAAGT--ACGATTATACTAAGTTTGAAGGG 1341 Query 2457 --TGAAGGCGCTGCTGTTCGTACTGCTGCAGAACAAATCGACTACCTTGAAGAATTGGTT 2514 | |||| || | || | |||||| || || | | ||| ||| | Sbjct 1340 AGTAAAGGAAAAA---TTAGAACGTCACATGAACAAGCTGATTATTTGGTAGAGTTGACT 1284 Query 2515 AACAAATACCCAATCATCACTATCGAAGATGGTATGGACGAAAACGACTGGGACGGTTGG 2574 ||||| ||||| || |||| || ||||| ||||| |||| || ||| | || ||| Sbjct 1283 TCAAAATATCCAATTATTTCTATTGAGGATGGGATGGATCAAAATGATTGGAATGGATGG 1224 Query 2575 AAATCTCTTACTGAACGTCTTGGTGGTAAAGTTCAATTGGTTGGTGACGACTTCTTCGTA 2634 |||| |||||| ||| | || |||||| || || || || || || || || ||| Sbjct 1223 AAATATCTTACAGAAAAAATAGGGAATAAAGTCCAGTTAGTAGGAGATGATTTGTTTGTA 1164 Query 2635 ACTAAC--ACTGCTTACCTTGAAAAAGGTATTGCAGAACACGCTGCTAACTCAATCCTTA 2692 || || || | | | |||| ||||| | | | || |||||| || || | | Sbjct 1163 ACCAATGTACAACGTCTATCGAAA--GGTATAGAAAATAACATTGCTAATTCGATTTTAA 1106 Query 2693 TCAAAGTTAACCAAATCGGTACTTTGACTGAAACTTTTGACGCTATCGAAATGGCGAAAG 2752 | |||||||| ||||| |||||||| || |||||| ||| || | | ||||| | Sbjct 1105 TAAAAGTTAATCAAATAGGTACTTTAACAGAAACTATTGCAGCAGTAAATATGGCTCATA 1046 Query 2753 AAGCTGGATACACAGCAGTAGTATCACACCGTTCAGGTGAAACTGAAGATTCAACAATCG 2812 | || ||||| || | || | ||||| | ||||||||||| ||||| || |||| Sbjct 1045 ATGCAGGATATACTTCTATAATGTCACATAGATCAGGTGAAACAGAAGACAATACTATCG 986 Query 2813 CTGATATTGCAGTTGCAACTAACGCTGGTCAAATTAAGACAGGTTCATTGTCACGTACTG 2872 | ||| | ||||| ||| || | || || || |||||||| || || | | || Sbjct 985 CAGATTTAGCAGTAGCATTAAATACAGGACAGATAAAGACAGGATCGGCCTCTAGAAGTG 926 Query 2873 ACCGTATTGCTAAATACAACCAATTGCTTCGTATCGAAGA 2912 | || || || ||||| || ||||| ||| | || || || Sbjct 925 ATCGCATGGCAAAATATAATCAATTACTTAGAATAGAGGA 886 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 156033769462956