Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vigna_20unguiculata_20subsp._20unguiculata_20[genbank_20GCA_5F001687 525.1_202016-07-20] 224,035 sequences; 695,045,594 total letters Query= AAMG01000190.1 Length=117 Score E Sequences producing significant alignments: (Bits) Value seq73609 86.0 3e-15 seq12752 86.0 3e-15 seq97938 73.4 2e-11 >seq73609 Length=5445 Score = 86.0 bits (94), Expect = 3e-15 Identities = 59/67 (88%), Gaps = 0/67 (0%) Strand=Plus/Minus Query 51 AACATCGCCCGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCG 110 |||||| | ||||||| |||||||| ||||| |||| |||||| ||||||||||||||| Sbjct 5184 AACATCCGCTGATCCCTGGTCGGCATCGTTTATGGTTGAGACTAGGACGGTATCTGATCG 5125 Query 111 TCTTCGA 117 ||||||| Sbjct 5124 TCTTCGA 5118 >seq12752 Length=18805 Score = 86.0 bits (94), Expect = 3e-15 Identities = 59/67 (88%), Gaps = 0/67 (0%) Strand=Plus/Minus Query 51 AACATCGCCCGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCG 110 |||||| | ||||||| |||||||| ||||| |||| |||||| ||||||||||||||| Sbjct 15747 AACATCCGCTGATCCCTGGTCGGCATCGTTTATGGTTGAGACTAGGACGGTATCTGATCG 15688 Query 111 TCTTCGA 117 ||||||| Sbjct 15687 TCTTCGA 15681 >seq97938 Length=202 Score = 73.4 bits (80), Expect = 2e-11 Identities = 78/103 (76%), Gaps = 0/103 (0%) Strand=Plus/Minus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 ||||||||| ||||||||||||| ||| ||| | | ||||| || ||||||| Sbjct 165 GAACCCAAACACTTTGATTTCTCATAACGTGTCAATGGAGTCCTAAAAGCAACATCGGTT 106 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTAT 103 ||||||| || || || ||||| |||| |||||| || | ||| Sbjct 105 GATCCCTGGTTGGAATCGTTTATGGTTGAGACTAGGATGATAT 63 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 277815268650