Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Vigna_20unguiculata_20subsp._20unguiculata_20[genbank_20GCA_5F001687
525.1_202016-07-20] 224,035 sequences; 695,045,594 total letters
Query= AAMG01000911.1
Length=280
Score E
Sequences producing significant alignments: (Bits) Value
seq18959 141 1e-31
seq50471 116 6e-24
seq40580 116 6e-24
seq60104 113 7e-23
seq31343 78.8 1e-12
>seq18959
Length=580
Score = 141 bits (156), Expect = 1e-31
Identities = 152/195 (78%), Gaps = 6/195 (3%)
Strand=Plus/Minus
Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61
||||| || | | ||||||||||||||||| ||||| |||||||||||||||||||| |
Sbjct 386 ACTCGTTGAATACATCAGTGTAGCGCGCGTGGGGCCCGGAACATCTAAGGGCATCACATA 327
Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGC--CAATAGTCCCTCTAAGAAGCCAG 119
| |||||||||||||||||| || |||| |||| | |||||||||||||||||| |
Sbjct 326 CTTGTTATTGCCTCAAACTTTTAT-GGCTT-AAGCGGCCATAGTCCCTCTAAGAAGCTGG 269
Query 120 CC-ACCAACCATA-GTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAA 177
|| || || || | | |||| | || | ||||||||||||||| || ||
Sbjct 268 CCGTGGAAGGTTACCTCCACATAGTTATTGACCAAACTGAGGTCTCGTTCGTTAGCGTAA 209
Query 178 TTAACCAGACAAATC 192
||||| |||||||||
Sbjct 208 TTAACTAGACAAATC 194
Score = 123 bits (136), Expect = 4e-26
Identities = 99/116 (85%), Gaps = 4/116 (3%)
Strand=Plus/Minus
Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61
||||| || | | ||||||||||||||||| ||||| |||||||||||||||||||| |
Sbjct 114 ACTCGTTGAATACATCAGTGTAGCGCGCGTGGGGCCCGGAACATCTAAGGGCATCACATA 55
Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGC--CAATAGTCCCTCTAAGAAG 115
| |||||||||||||||||| || |||| |||| | |||||||||||||||||
Sbjct 54 CTTGTTATTGCCTCAAACTTTTAT-GGCTT-AAGCGGCCATAGTCCCTCTAAGAAG 1
>seq50471
Length=14951
Score = 116 bits (128), Expect = 6e-24
Identities = 75/82 (91%), Gaps = 0/82 (0%)
Strand=Plus/Minus
Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61
||||| || | | |||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct 2060 ACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCATAACATCTAAGGACATCACAGA 2001
Query 62 CCTGTTATTGCCTCAAACTTCC 83
||||||||||||||||||||||
Sbjct 2000 CCTGTTATTGCCTCAAACTTCC 1979
>seq40580
Length=5286
Score = 116 bits (128), Expect = 6e-24
Identities = 75/82 (91%), Gaps = 0/82 (0%)
Strand=Plus/Plus
Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61
||||| || | | |||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct 5161 ACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCATAACATCTAAGGACATCACAGA 5220
Query 62 CCTGTTATTGCCTCAAACTTCC 83
||||||||||||||||||||||
Sbjct 5221 CCTGTTATTGCCTCAAACTTCC 5242
>seq60104
Length=6779
Score = 113 bits (124), Expect = 7e-23
Identities = 64/65 (98%), Gaps = 0/65 (0%)
Strand=Plus/Plus
Query 179 TAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAA 238
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2883 TAACCAGACAAATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAA 2942
Query 239 GAAAG 243
|||||
Sbjct 2943 GAAAG 2947
>seq31343
Length=16520
Score = 78.8 bits (86), Expect = 1e-12
Identities = 80/103 (78%), Gaps = 1/103 (1%)
Strand=Plus/Minus
Query 141 GCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAA-TTAACCAGACAAATCACTCCAC 199
||||||||||| ||||| || | ||| | | ||| ||||| ||| ||||||||||||
Sbjct 9304 GCTATTTAGCAAGTTAAAATCCCCTTCACTTTGTGAAATTAACTAGATAAATCACTCCAC 9245
Query 200 CAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAA 242
||| |||||| | ||| | |||||| ||| | ||| ||||||
Sbjct 9244 CAATTAAGAATGACCACACGCCACCAACCAAATAATAAAGAAA 9202
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 795070673835
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |