Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vigna_20unguiculata_20subsp._20unguiculata_20[genbank_20GCA_5F001687 525.1_202016-07-20] 224,035 sequences; 695,045,594 total letters Query= AAMG01001821.1 Length=161 Score E Sequences producing significant alignments: (Bits) Value seq47755 127 2e-27 seq26906 104 2e-20 seq194616 86.0 5e-15 seq8299 84.2 2e-14 >seq47755 Length=5186 Score = 127 bits (140), Expect = 2e-27 Identities = 124/160 (78%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 2 CGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGG 61 |||||||||| |||||||||| ||| | | ||| ||| ||||||| ||||||||| Sbjct 4497 CGAGTTGCAGCCTACAATCCGAACTGAGGACGAGTTTTTGGAGTTAGCTCACCCTCGCGG 4438 Query 62 GTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCAT 121 | | ||| ||| ||| |||||||| ||||||| |||| |||||||| ||| Sbjct 4437 GATCGCGATCCTTTGTCCCGTCCATTGTAGCACGTGTGTCGCCCAGGGCATAAGGGGCAT 4378 Query 122 GAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161 || ||||||||||||||| ||||||||||||| || |||| Sbjct 4377 GATGACTTGACGTCATCCTCACCTTCCTCCGGCTTATCAC 4338 >seq26906 Length=27427 Score = 104 bits (114), Expect = 2e-20 Identities = 95/120 (79%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 42 GGATTAGCTCCCCCTCGCGGGTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAA 101 ||||| ||||| ||| | | | || ||| |||| | |||||||| ||||||| Sbjct 22001 GGATTCGCTCCGCCTTACAGCCTTGCTTCCCATTGTAATTGCCATTGTAGCACGTGTGTG 22060 Query 102 GCCCTACCCATAAGGGCCATGAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161 |||| ||||||||||||||| |||||||||||||||||||||||||||| || | |||| Sbjct 22061 GCCCAGCCCATAAGGGCCATGCGGACTTGACGTCATCCCCACCTTCCTCCAGTATATCAC 22120 >seq194616 Length=661 Score = 86.0 bits (94), Expect = 5e-15 Identities = 118/161 (73%), Gaps = 3/161 (2%) Strand=Plus/Minus Query 2 CGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGG 61 |||||||||| | ||||||| || | | | ||| ||| ||||||| |||| |||| Sbjct 203 CGAGTTGCAGCCCACAATCCAAACCAAGGACGAGTTTTTGGAGTTAGCTCACCCTTGCGG 144 Query 62 GTTGGCGGCCCTCTGT-ATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCA 120 | | ||| ||| ||| |||| |||||||| || |||| ||| ||||| || | Sbjct 143 GATTGCGATCCTTTGTTATGT-CCATTGTAGCACATGTGTTGCCTAGGGCATAAAGGG-A 86 Query 121 TGAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161 | | ||||||||||||||| |||||||| || ||| |||| Sbjct 85 TAATGACTTGACGTCATCCTCACCTTCCAACGATTTATCAC 45 >seq8299 Length=11182 Score = 84.2 bits (92), Expect = 2e-14 Identities = 66/79 (84%), Gaps = 0/79 (0%) Strand=Plus/Minus Query 83 CCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCATGAGGACTTGACGTCATCCCCA 142 |||||||| ||||||| |||| | |||||||| ||||| ||||||||||||||| | Sbjct 151 CCATTGTAGCACGTGTGTCGCCCAAGGCATAAGGGGCATGATGACTTGACGTCATCCTAA 92 Query 143 CCTTCCTCCGGTTTGTCAC 161 ||||||||||| || |||| Sbjct 91 CCTTCCTCCGGCTTATCAC 73 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 415097138950