Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vigna_20unguiculata_20subsp._20unguiculata_20[genbank_20GCA_5F001687 525.1_202016-07-20] 224,035 sequences; 695,045,594 total letters Query= AAMG01001962.1 Length=275 Score E Sequences producing significant alignments: (Bits) Value seq80978 174 2e-41 seq31780 141 1e-31 seq80880 118 2e-24 seq26401 91.5 2e-16 seq49230 87.8 3e-15 >seq80978 Length=849 Score = 174 bits (192), Expect = 2e-41 Identities = 188/249 (76%), Gaps = 4/249 (2%) Strand=Plus/Plus Query 29 CAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGCTATGCACTTGGCAGTACAACTGGTGC 88 |||| || | || | | |||||||| ||| || ||| |||||| ||||| ||| | Sbjct 297 CAGCAGTTCTTCCATACCAACTTAGCAGCCCGGCGCTGCTATTGGCATAACAACCGGTAC 356 Query 89 ACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGACAGCTCCTCTCAAATTTCCT- 147 |||| ||||| | ||| ||| |||||||||||||| || ||||||| || | ||| Sbjct 357 ACCATAGGTTGGCCCAACCCAGTCCTCTCGTACTAGGGTTGGCTCCTCGCAGTTCTCCCT 416 Query 148 ---ACGCCCACGACGGATAGGGACCGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGT 204 || || ||| |||||| ||||||||||||| ||| |||| |||||| || ||| Sbjct 417 TTAACACCAACGGTAGATAGGAACCGAACTGTCTCACGATATTCTAAACCCAATTCACGT 476 Query 205 GCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTCAGCCCCAGGATGAGACG 264 || ||| ||| |||||||| || |||||||||||||| ||||| ||||| |||| || | Sbjct 477 ACCACTTGAATCGGCGAACAACCGAACCCTTGGGACCTTCTTCAACCCCAAGATGTGATG 536 Query 265 AGCCGACAT 273 || |||||| Sbjct 537 AGTCGACAT 545 >seq31780 Length=18751 Score = 141 bits (156), Expect = 1e-31 Identities = 182/251 (73%), Gaps = 4/251 (2%) Strand=Plus/Minus Query 29 CAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGCTATGCACTTGGCAGTACAACTGGTGC 88 |||| || | || | | |||||||| | || ||| || ||| ||||| ||| | Sbjct 10436 CAGCAGTTCTTCCATACCAACTTAGCAACTTAGAGTTGCTATTAGCATAACAACAGGTAC 10377 Query 89 ACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGACAGCTCCTCTCAAATTTCCT- 147 |||| ||||| | ||| ||| ||||||||||||| || |||||| || | ||| Sbjct 10376 ACCATAGGTTGGCCCAACCCAATCCTCTCGTACTAGGGTTGCCTCCTCACAGTTCTCCCT 10317 Query 148 ---ACGCCCACGACGGATAGGGACCGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGT 204 || | ||| |||||| ||||||||||||| ||||||||| |||||| ||| || Sbjct 10316 TTAACAACAACGGTAGATAGGAACCGAACTGTCTCACGACGTTCTAAACCCAACTCATGT 10257 Query 205 GCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTCAGCCCCAGGATGAGACG 264 || ||| ||| ||| |||| | |||||||||||| | ||||| || ||| ||| || | Sbjct 10256 ACCACTTGAATCGGCAAACAACTGAACCCTTGGGACTTTCTTCAACCTCAGTATGTGATG 10197 Query 265 AGCCGACATCG 275 || |||||||| Sbjct 10196 AGTCGACATCG 10186 >seq80880 Length=1142 Score = 118 bits (130), Expect = 2e-24 Identities = 171/240 (71%), Gaps = 5/240 (2%) Strand=Plus/Plus Query 38 TCCCTTCCAAACTTAGCTTCCCAGCTATGCACTTGGCAGTACAACTGGTGCACCAGAGGT 97 ||| | ||||| ||||| |||||| ||| |||||| | ||| || || || | | Sbjct 156 TCCATACCAAA-TTAGCAGCCCAGCGTTGCTATTGGCATAATAACCAGTACAACATATAT 214 Query 98 TTGTCCATCCCGGTCCTCTCGTACTAAGGACAGCTCCTCTCAAATTTCCT----ACGCCC 153 | | ||| ||| ||||||| |||||| || | ||||| | | ||| || || Sbjct 215 TGGCCCAACCCAGTCCTCTTGTACTAGGGTTGGTTCCTCGTAGTTATCCCTTTAACACCA 274 Query 154 ACGACGGATAGGGACCGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGTGCCTCTTTA 213 ||| |||||| ||| || |||||| | ||||||| |||| | ||| ||| || ||| | Sbjct 275 ACGGTAGATAGGAACCAAATTGTCTCACAACGTTCTAAACCTAACTCACGTACCACTTGA 334 Query 214 ATGGGCGAACAGCCCAACCCTTGGGACCTACTTCAGCCCCAGGATGAGACGAGCCGACAT 273 || | |||||| |||||||||||||| ||||| ||| | |||| || ||| |||||| Sbjct 335 ATCGACGAACAATTAAACCCTTGGGACCTTCTTCAACCCTAAGATGTGATGAGTCGACAT 394 >seq26401 Length=11034 Score = 91.5 bits (100), Expect = 2e-16 Identities = 79/98 (81%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 72 GGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGACAGC 131 |||| | |||||| |||||||||| |||| ||||||||||||||||||| ||| || Sbjct 10533 GGCACGATAACTGGCACACCAGAGGTGCGTCCTTCCCGGTCCTCTCGTACTAGGGAAAGG 10592 Query 132 TCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACC 169 ||||||||| || |||||||| |||||| ||||| Sbjct 10593 TCCTCTCAATGCTCTAACGCCCACACCGGATATGGACC 10630 >seq49230 Length=8940 Score = 87.8 bits (96), Expect = 3e-15 Identities = 57/63 (90%), Gaps = 0/63 (0%) Strand=Plus/Plus Query 194 CCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTCAGCCCC 253 ||||||| ||| || ||||||||||||||||||||||||||||| || |||| ||||||| Sbjct 8084 CCAGCTCACGTACCGCTTTAATGGGCGAACAGCCCAACCCTTGGAACATACTACAGCCCC 8143 Query 254 AGG 256 ||| Sbjct 8144 AGG 8146 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 779105399260