Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vigna_20unguiculata_20subsp._20unguiculata_20[genbank_20GCA_5F001687 525.1_202016-07-20] 224,035 sequences; 695,045,594 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq50471 188 1e-45 seq40580 188 1e-45 seq18959 147 4e-33 seq28020 138 2e-30 >seq50471 Length=14951 Score = 188 bits (208), Expect = 1e-45 Identities = 152/180 (84%), Gaps = 3/180 (2%) Strand=Plus/Plus Query 103 GGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGC 162 ||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||| Sbjct 1979 GGAAGTTTGAGGCAATAACAGGTCTGTGATGTCCTTAGATGTTATGGGCCGCACGCGCGC 2038 Query 163 TACACTGACAGAGCCAACGAGTTCATCACCTTGGCCG-GAAGGTCTGGGTAATCTTGTTA 221 |||||||| | ||||||||| || || |||||| ||| || ||||||||| | | Sbjct 2039 TACACTGATGTATTCAACGAGTTTATAGCCATGGCCGACAAGCTC-AGGTAATCTT-TGA 2096 Query 222 AACTCTGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAG 281 || | ||||| |||||||||| |||||||||| ||| | ||||||||||||| ||||| Sbjct 2097 AATTTCATCGTGATGGGGATAGATCATTGCAATTGTTGGTTTTCAACGAGGAATTCCTAG 2156 >seq40580 Length=5286 Score = 188 bits (208), Expect = 1e-45 Identities = 152/180 (84%), Gaps = 3/180 (2%) Strand=Plus/Minus Query 103 GGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGC 162 ||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||| Sbjct 5242 GGAAGTTTGAGGCAATAACAGGTCTGTGATGTCCTTAGATGTTATGGGCCGCACGCGCGC 5183 Query 163 TACACTGACAGAGCCAACGAGTTCATCACCTTGGCCG-GAAGGTCTGGGTAATCTTGTTA 221 |||||||| | ||||||||| || || |||||| ||| || ||||||||| | | Sbjct 5182 TACACTGATGTATTCAACGAGTTTATAGCCATGGCCGACAAGCTC-AGGTAATCTT-TGA 5125 Query 222 AACTCTGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAG 281 || | ||||| |||||||||| |||||||||| ||| | ||||||||||||| ||||| Sbjct 5124 AATTTCATCGTGATGGGGATAGATCATTGCAATTGTTGGTTTTCAACGAGGAATTCCTAG 5065 >seq18959 Length=580 Score = 147 bits (162), Expect = 4e-33 Identities = 141/177 (80%), Gaps = 4/177 (2%) Strand=Plus/Plus Query 67 GCCGGCTTCTTAGAGGGACTATCG--GCTCAAGCCGATGGAAGTTTGAGGCAATAACAGG 124 ||| |||||||||||||||||| | ||| ||||| || |||||||||||||||||| | Sbjct 268 GCCAGCTTCTTAGAGGGACTATGGCCGCTTAAGCC-ATAAAAGTTTGAGGCAATAACAAG 326 Query 125 TCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGT 184 | |||||||||||||||||||| ||||| ||||||||||||||||| | |||||||| Sbjct 327 TATGTGATGCCCTTAGATGTTCCGGGCCCCACGCGCGCTACACTGATGTATTCAACGAGT 386 Query 185 TCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGAT 241 || ||||| || ||| | | |||||| | | ||| | ||||| ||||||| Sbjct 387 CTATAGTCTTGGTCGACAGGCCCGAGTAATC-TCTGAAATTTCATCGTGATGGGGAT 442 Score = 129 bits (142), Expect = 1e-27 Identities = 99/115 (86%), Gaps = 3/115 (3%) Strand=Plus/Plus Query 72 CTTCTTAGAGGGACTATCG--GCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGT 129 ||||||||||||||||| | ||| ||||| || |||||||||||||||||| || ||| Sbjct 1 CTTCTTAGAGGGACTATGGCCGCTTAAGCC-ATAAAAGTTTGAGGCAATAACAAGTATGT 59 Query 130 GATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGT 184 ||||||||||||||||| ||||| ||||||||||||||||| | |||||||| Sbjct 60 GATGCCCTTAGATGTTCCGGGCCCCACGCGCGCTACACTGATGTATTCAACGAGT 114 >seq28020 Length=5307 Score = 138 bits (152), Expect = 2e-30 Identities = 87/94 (93%), Gaps = 0/94 (0%) Strand=Plus/Plus Query 235 TGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCA 294 |||||||||| |||||||||| ||| ||||||||||||||| ||||||||||||| |||| Sbjct 4618 TGGGGATAGATCATTGCAATTGTTGGTCTTCAACGAGGAATTCCTAGTAAGCGCGAGTCA 4677 Query 295 TCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 ||||| |||||||| ||||||||||||||||||| Sbjct 4678 TCAGCTCGCGTTGACTACGTCCCTGCCCTTTGTA 4711 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 945077940480