Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vigna_20unguiculata_20subsp._20unguiculata_20[genbank_20GCA_5F001687 525.1_202016-07-20] 224,035 sequences; 695,045,594 total letters Query= AAMG01002207.1 Length=564 Score E Sequences producing significant alignments: (Bits) Value seq164506 136 1e-29 seq31780 125 2e-26 seq20863 125 2e-26 >seq164506 Length=386 Score = 136 bits (150), Expect = 1e-29 Identities = 228/322 (71%), Gaps = 6/322 (2%) Strand=Plus/Plus Query 1 TCGACTTGTA-AGTCTCGCAGTCAAGCTCCCTTGTGCACTTACACTCACCACCTGATTGC 59 |||||||||| ||||||||||| |||| | ||| ||| ||||| ||| | | || | Sbjct 67 TCGACTTGTAGAGTCTCGCAGTTAAGCACACTTATGCCCTTACGCTCTACGATAGGTTTC 126 Query 60 CAACCAGGCTGAGGGAACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACCGCCCCA 119 || | ||||| | ||||| | ||||||||||||| |||||||| ||| ||||||||| Sbjct 127 CATGCTATCTGAGTGTACCTTCGCGCGCCTCCGTTACTTTTTGGGA-GGCGACCGCCCCA 185 Query 120 GTTAAACTACCCACCAGGCACTGTCCCCAACCCAGA-TCATGGGCCAAGGTTAGA-TATC 177 || ||||| |||| ||| || |||| | || || | | | | |||| ||| ||| Sbjct 186 GTCAAACTGCCCATCAGACATTGTCTCTGCGCCGGATTTACGACGCTAGGTGAGACGATC 245 Query 178 CACTACGGTCAGAGTGGTATTTCAACAACGACTCCACAACCACTAGCGTGGCCGCATCAT 237 | | | |||| |||||||||||| | ||||| |||||| | ||| Sbjct 246 AAAT-CCATCAGGGTGGTATTTCAAGTTTGCCTCCATCTGAGCTAGCGCCCAAACTTCAA 304 Query 238 AGTCTCCCACCTATCCTACACAAACCGCACCGAATGCCAATACCAAGCTATAGTGAAGG- 296 || ||||||||||||||||||| || | ||| | || | ||| | ||| |||| Sbjct 305 AGGCTCCCACCTATCCTACACAGACAGATTCGATCGTCAGTGTCAAATTGCAGTAAAGGT 364 Query 297 TCCCGGGGTCTTTTCGTCCTGC 318 || |||||||||| |||| ||| Sbjct 365 TCACGGGGTCTTTCCGTCTTGC 386 >seq31780 Length=18751 Score = 125 bits (138), Expect = 2e-26 Identities = 176/246 (72%), Gaps = 1/246 (0%) Strand=Plus/Minus Query 234 TCATAGTCTCCCACCTATCCTACACAAACCGCACCGAATGCCAATACCAAGCTATAGTGA 293 |||| | ||||||||||||||||||| | | || || || |||||||| | | Sbjct 9871 TCATCGCCTCCCACCTATCCTACACATTCAATCAAGGTTGTCACTATAAAGCTATAATTA 9812 Query 294 AGGTCCC-GGGGTCTTTTCGTCCTGCCGCGCGAAACGAGCATCTTTACTCGTACTGCAAT 352 |||| | |||||||| ||| ||| | | ||||||| || | | |||| Sbjct 9811 AGGTGCATGGGGTCTTACCGTTTAGCCATTGGTACTTCGCATCTTCACAAAGAATTCAAT 9752 Query 353 TTCACCGGGCCTGTGGTTGAGACAGCAGGGGAGTCGTTACGCCATTCGTGCAGGTCGGAA 412 ||||| ||| | || ||| ||| ||| ||||||||| ||||||||| |||||| | Sbjct 9751 TTCACTGGGTCCATGTCAGAGGTAGCGGGGCAGTCGTTACACCATTCGTGTAGGTCGCTA 9692 Query 413 CTTACCCGACAAGGAATTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTACTG 472 |||| |||||||||||||||| ||||||||| |||| |||||| | | ||||| || Sbjct 9691 CTTATGCGACAAGGAATTTCGCCACCTTAGGACAGTTAGAGTTACTGCTGTTGTTTATTG 9632 Query 473 GGGCTT 478 ||||| Sbjct 9631 AGGCTT 9626 >seq20863 Length=629 Score = 125 bits (138), Expect = 2e-26 Identities = 84/94 (89%), Gaps = 0/94 (0%) Strand=Plus/Minus Query 386 TCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGAT 445 |||||||| | ||||||| ||||| |||||||||||||||||||||||||||||||||| Sbjct 470 TCGTTACGTCTTTCGTGCGGGTCGAAACTTACCCGACAAGGAATTTCGCTACCTTAGGAC 411 Query 446 GGTTATAGTTACCACCGCCGTTTACTGGGGCTTC 479 ||||||||||| | ||||||| || |||||||| Sbjct 410 CGTTATAGTTACGATCGCCGTTCACCGGGGCTTC 377 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1698586028160