Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vigna_20unguiculata_20subsp._20unguiculata_20[genbank_20GCA_5F001687 525.1_202016-07-20] 224,035 sequences; 695,045,594 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq205188 140 3e-28 seq222699 132 4e-26 seq33025 87.8 1e-12 >seq205188 Length=846 Score = 140 bits (154), Expect = 3e-28 Identities = 382/578 (66%), Gaps = 9/578 (2%) Strand=Plus/Minus Query 61045 AATCCTCGTCGTTTCGTATTGTTCCCCATCGAGTATGAGGATATTTGGCGCATGTACAAA 61104 || ||| ||||||| ||||||| ||| | || | || ||| |||||||| Sbjct 578 AACCCTGATCGTTTCTGCATGTTCCCTATCCAATACCCCCAAATCTGGGAAATGTACAAG 519 Query 61105 AAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCCAAAGACATGAATGAC 61164 || || ||||| || |||||||||| ||||||||||||| | || | ||||| | | Sbjct 518 AAAGCAGAAGCCTCGTTCTGGACGGCGGAGGAGGTCGATCTCTCTCAGGACATCAGCCAT 459 Query 61165 TGGGAGCGTTT-ATCGAGCGGTGAACAACATTTCATTAAACATGTGTTGGCGTTCTTTGC 61223 ||| | | | | ||| ||| || | |||||||| | || || | || ||||| || Sbjct 458 TGGAACACTCTCACCGA-CGGCGAGCGCCATTTCATCACCCACGTCCTTGCCTTCTTCGC 400 Query 61224 CGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACGTTTCGCGCAGGAGGTGCAAGT 61283 ||| || ||||| ||||| || || | | ||||| | ||||||| || || Sbjct 399 CGCCTCCGACGGCATCGTACTCGAAAACCTCGCCGGCCGTTTTATGAAGGAGGTCCAGGT 340 Query 61284 GTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTCCACTCGGAGAT 61343 || ||||| || || |||||||||||||| ||||| ||||| | ||||| ||||| Sbjct 339 CTCCGAGGCCCGCGCCTTTTACGGCTTCCAGATCGCCATCGAGAACATTCACTCCGAGAT 280 Query 61344 GTACAGTGTTCTCATCGATACGTACATCAGGGAGCGGGCGGAACGTGAA--CGATTGTTC 61401 |||||| | ||| |||| || ||||| | || || | | || || | || Sbjct 279 GTACAGCCTCCTCCTCGAAACCTACATAA--AAGACTCCGTAGAGAAAAGCCGTCTCTTT 222 Query 61402 AATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGGCCTTCAATTGGATC 61461 | ||||| || || || || || | ||| || | |||||| || |||||| Sbjct 221 CACGCCATTGACACCATTCCCTGTGTCACCAAGAAGGCCAACTGGGCCCTCCGCTGGATC 162 Query 61462 ACCAGTACAACGGCTACATTTGGTGAACGATTGCTGGCATTTGCGGTGGTCGAGGGTGTA 61521 | | | || || | || | || || | | |||||||| || ||||| | Sbjct 161 GACTCTTC--CGACT-CCTTCGCCGAGCGCATCGTCGCATTTGCCTGCGTTGAGGGAATC 105 Query 61522 TTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTATGCCCGGT 61581 || ||| ||| ||| | | ||||| ||| | |||||||| || || ||||| || Sbjct 104 TTCTTCTCCGGAAGCTTTTGCTCCATCTTCTGGCTCAAGAAACGGGGCCTCATGCCAGGA 45 Query 61582 CTGACCTTCAGCAATGAGTTGATATCACGCGACGAGGG 61619 || |||||| ||| || | || || ||||||||||| Sbjct 44 CTCACCTTCTCCAACGAACTCATCTCCCGCGACGAGGG 7 >seq222699 Length=2956 Score = 132 bits (146), Expect = 4e-26 Identities = 217/310 (70%), Gaps = 2/310 (1%) Strand=Plus/Plus Query 61064 TGTTCCCCATCGAGTATGAGGATATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCT 61123 ||||||| ||| | || | |||||| |||||||| || || ||||| || |||| Sbjct 96 TGTTCCCAATCCAATACCCCCAAATTTGGGAAATGTACAAGAAAGCCGAAGCCTCTTTCT 155 Query 61124 GGACGGTGGAGGAGGTCGATTTGTCCAAAGACATGAATGACTGGGAG-CGTTTATCGAGC 61182 |||| | || ||||| ||| | ||| ||||| | ||||||| | | | ||| | Sbjct 156 GGACCGCCGAAGAGGTTGATCTTTCCCAAGACCTCCGCCACTGGGACTCCCTCACCGA-C 214 Query 61183 GGTGAACAACATTTCATTAAACATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTC 61242 || || | | ||||| | || || | || ||||||||||| || ||||| ||||| Sbjct 215 GGCGAGCGCTACTTCATCACCCACGTCCTCGCCTTCTTTGCCGCCTCCGACGGCATCGTT 274 Query 61243 AATGAGAATTTATTGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTC 61302 || || | | || ||| | |||| | |||| | ||||| ||| |||| Sbjct 275 CTCGAAAACCTCGCCGCCCGCTTCATGAAGGAAATCCAAGCCGCCGAGGCCCGTGCTTTC 334 Query 61303 TACGGCTTCCAGATTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGAT 61362 |||||||||||||| ||||| ||||| ||||||| |||||||||||| | ||| | || Sbjct 335 TACGGCTTCCAGATCGCCATCGAGAACATCCACTCCGAGATGTACAGTCTCCTCTTGGAA 394 Query 61363 ACGTACATCA 61372 || ||||||| Sbjct 395 ACCTACATCA 404 >seq33025 Length=5457 Score = 87.8 bits (96), Expect = 1e-12 Identities = 96/128 (75%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 55035 CACGCCATCGATGTGGGAGCTGGTATCATTGACGAGGACTATCGCGGACCGATCGGTGTT 55094 ||| ||||||||||||| ||||| | ||||||| |||||| | |||||| | |||||| Sbjct 4646 CACTCCATCGATGTGGGCGCTGGAGTGATTGACGCGGACTACAGGGGACCGGTTGGTGTT 4587 Query 55095 ATACTCTTCAATCACAGCGATGTACCGTTTGTCGTCAACATTGGTGATCGTATCGCCCAA 55154 ||||| ||||| || ||||| |||| || || |||| ||| | | || ||| Sbjct 4586 ATACTGTTCAACCATTCGGATGTGGATTTTGAAGTGAAGGTTGGAGATAGGGTTGCACAA 4527 Query 55155 CTCATCAT 55162 |||||||| Sbjct 4526 CTCATCAT 4519 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396482469772400