Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Vigna_20unguiculata_20subsp._20unguiculata_20[genbank_20GCA_5F001687
525.1_202016-07-20] 224,035 sequences; 695,045,594 total letters
Query= NC_010671.1
Length=124279
Score E
Sequences producing significant alignments: (Bits) Value
seq205188 140 3e-28
seq222699 132 4e-26
seq33025 87.8 1e-12
>seq205188
Length=846
Score = 140 bits (154), Expect = 3e-28
Identities = 382/578 (66%), Gaps = 9/578 (2%)
Strand=Plus/Minus
Query 61045 AATCCTCGTCGTTTCGTATTGTTCCCCATCGAGTATGAGGATATTTGGCGCATGTACAAA 61104
|| ||| ||||||| ||||||| ||| | || | || ||| ||||||||
Sbjct 578 AACCCTGATCGTTTCTGCATGTTCCCTATCCAATACCCCCAAATCTGGGAAATGTACAAG 519
Query 61105 AAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCCAAAGACATGAATGAC 61164
|| || ||||| || |||||||||| ||||||||||||| | || | ||||| | |
Sbjct 518 AAAGCAGAAGCCTCGTTCTGGACGGCGGAGGAGGTCGATCTCTCTCAGGACATCAGCCAT 459
Query 61165 TGGGAGCGTTT-ATCGAGCGGTGAACAACATTTCATTAAACATGTGTTGGCGTTCTTTGC 61223
||| | | | | ||| ||| || | |||||||| | || || | || ||||| ||
Sbjct 458 TGGAACACTCTCACCGA-CGGCGAGCGCCATTTCATCACCCACGTCCTTGCCTTCTTCGC 400
Query 61224 CGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACGTTTCGCGCAGGAGGTGCAAGT 61283
||| || ||||| ||||| || || | | ||||| | ||||||| || ||
Sbjct 399 CGCCTCCGACGGCATCGTACTCGAAAACCTCGCCGGCCGTTTTATGAAGGAGGTCCAGGT 340
Query 61284 GTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTCCACTCGGAGAT 61343
|| ||||| || || |||||||||||||| ||||| ||||| | ||||| |||||
Sbjct 339 CTCCGAGGCCCGCGCCTTTTACGGCTTCCAGATCGCCATCGAGAACATTCACTCCGAGAT 280
Query 61344 GTACAGTGTTCTCATCGATACGTACATCAGGGAGCGGGCGGAACGTGAA--CGATTGTTC 61401
|||||| | ||| |||| || ||||| | || || | | || || | ||
Sbjct 279 GTACAGCCTCCTCCTCGAAACCTACATAA--AAGACTCCGTAGAGAAAAGCCGTCTCTTT 222
Query 61402 AATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGGCCTTCAATTGGATC 61461
| ||||| || || || || || | ||| || | |||||| || ||||||
Sbjct 221 CACGCCATTGACACCATTCCCTGTGTCACCAAGAAGGCCAACTGGGCCCTCCGCTGGATC 162
Query 61462 ACCAGTACAACGGCTACATTTGGTGAACGATTGCTGGCATTTGCGGTGGTCGAGGGTGTA 61521
| | | || || | || | || || | | |||||||| || ||||| |
Sbjct 161 GACTCTTC--CGACT-CCTTCGCCGAGCGCATCGTCGCATTTGCCTGCGTTGAGGGAATC 105
Query 61522 TTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTATGCCCGGT 61581
|| ||| ||| ||| | | ||||| ||| | |||||||| || || ||||| ||
Sbjct 104 TTCTTCTCCGGAAGCTTTTGCTCCATCTTCTGGCTCAAGAAACGGGGCCTCATGCCAGGA 45
Query 61582 CTGACCTTCAGCAATGAGTTGATATCACGCGACGAGGG 61619
|| |||||| ||| || | || || |||||||||||
Sbjct 44 CTCACCTTCTCCAACGAACTCATCTCCCGCGACGAGGG 7
>seq222699
Length=2956
Score = 132 bits (146), Expect = 4e-26
Identities = 217/310 (70%), Gaps = 2/310 (1%)
Strand=Plus/Plus
Query 61064 TGTTCCCCATCGAGTATGAGGATATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCT 61123
||||||| ||| | || | |||||| |||||||| || || ||||| || ||||
Sbjct 96 TGTTCCCAATCCAATACCCCCAAATTTGGGAAATGTACAAGAAAGCCGAAGCCTCTTTCT 155
Query 61124 GGACGGTGGAGGAGGTCGATTTGTCCAAAGACATGAATGACTGGGAG-CGTTTATCGAGC 61182
|||| | || ||||| ||| | ||| ||||| | ||||||| | | | ||| |
Sbjct 156 GGACCGCCGAAGAGGTTGATCTTTCCCAAGACCTCCGCCACTGGGACTCCCTCACCGA-C 214
Query 61183 GGTGAACAACATTTCATTAAACATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTC 61242
|| || | | ||||| | || || | || ||||||||||| || ||||| |||||
Sbjct 215 GGCGAGCGCTACTTCATCACCCACGTCCTCGCCTTCTTTGCCGCCTCCGACGGCATCGTT 274
Query 61243 AATGAGAATTTATTGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTC 61302
|| || | | || ||| | |||| | |||| | ||||| ||| ||||
Sbjct 275 CTCGAAAACCTCGCCGCCCGCTTCATGAAGGAAATCCAAGCCGCCGAGGCCCGTGCTTTC 334
Query 61303 TACGGCTTCCAGATTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGAT 61362
|||||||||||||| ||||| ||||| ||||||| |||||||||||| | ||| | ||
Sbjct 335 TACGGCTTCCAGATCGCCATCGAGAACATCCACTCCGAGATGTACAGTCTCCTCTTGGAA 394
Query 61363 ACGTACATCA 61372
|| |||||||
Sbjct 395 ACCTACATCA 404
>seq33025
Length=5457
Score = 87.8 bits (96), Expect = 1e-12
Identities = 96/128 (75%), Gaps = 0/128 (0%)
Strand=Plus/Minus
Query 55035 CACGCCATCGATGTGGGAGCTGGTATCATTGACGAGGACTATCGCGGACCGATCGGTGTT 55094
||| ||||||||||||| ||||| | ||||||| |||||| | |||||| | ||||||
Sbjct 4646 CACTCCATCGATGTGGGCGCTGGAGTGATTGACGCGGACTACAGGGGACCGGTTGGTGTT 4587
Query 55095 ATACTCTTCAATCACAGCGATGTACCGTTTGTCGTCAACATTGGTGATCGTATCGCCCAA 55154
||||| ||||| || ||||| |||| || || |||| ||| | | || |||
Sbjct 4586 ATACTGTTCAACCATTCGGATGTGGATTTTGAAGTGAAGGTTGGAGATAGGGTTGCACAA 4527
Query 55155 CTCATCAT 55162
||||||||
Sbjct 4526 CTCATCAT 4519
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 396482469772400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |