Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vigna_20unguiculata_20subsp._20unguiculata_20[genbank_20GCA_5F001687 525.1_202016-07-20] 224,035 sequences; 695,045,594 total letters Query= NC_031906.1 Length=198190 Score E Sequences producing significant alignments: (Bits) Value seq80997 210 3e-49 seq95291 183 4e-41 seq13836 129 7e-25 seq78999 104 3e-17 >seq80997 Length=4773 Score = 210 bits (232), Expect = 3e-49 Identities = 301/416 (72%), Gaps = 10/416 (2%) Strand=Plus/Plus Query 188878 AACCGTCTGTATGTCGGTTGGTTCGGTGTCCTGATGATCCCTACGCTTCTCGCTGCAACC 188937 || ||||| || | || ||||| ||||| ||||||| ||||| | | ||||||| Sbjct 4363 AATCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATTCCTACTTTATTGACTGCAACT 4422 Query 188938 ATCTGC-TTCATCGTCGCCTTTGTCGCTGCACCCCCTGTAGACATTGATGGCATCCGCGA 188996 |||| || || |||| ||| ||||||| || || ||||| |||||||| || || || Sbjct 4423 -TCTGTATTTATTATCGCTTTTATCGCTGCCCCTCCAGTAGATATTGATGGTATTCGTGA 4481 Query 188997 ACCCGTCGCTGGTTCACTCATGTATGGAAACAACATCATCTCTGGTGCTGTTGTCCCTTC 189056 || || |||| || || | ||||||||||| ||||| |||||||| || | ||| | Sbjct 4482 GCCTGTTTCTGGATCTCTACTTTATGGAAACAATATCATTTCTGGTGCGATTATTCCTAC 4541 Query 189057 ATCCAACGCAATTGGTCTTCACTTCTACCCCATCTGGGAAGCCGCCTCACTCGATGAGTG 189116 || || || ||| | || || || || ||||||||||| || || | |||||||| Sbjct 4542 TTCTGCGGCTATAGGTTTGCATTTTTATCCGATCTGGGAAGCAGCTTCTGTTGATGAGTG 4601 Query 189117 GCTCTACAACGGTGGTCCTTTCCAACTGGTAGTCTTCCACTTCCTCATCGGCATCTACGC 189176 | | |||||||| ||||||| |||| | || | |||||| | | || | || || Sbjct 4602 GTTATACAACGGCGGTCCTTATGAACTAATTGTTCTACACTTCTTACTTGG--TGTA-GC 4658 Query 189177 ---CTACATGGGTCGTGAGTGGGAACTCTCTTACCGTCTCGGTATGCGTCCTTGGATCTG 189233 |||||||||||||||||||||||| || ||||| ||||||||||||||||| || Sbjct 4659 TTGCTACATGGGTCGTGAGTGGGAACTTAGTTTTCGTCTGGGTATGCGTCCTTGGAT-TG 4717 Query 189234 C-ATTGCTTACTCTGCACCTGTTGCAGCAGCATCCGCAGTCTTTCTGGTCTATCCT 189288 | |||| || | || | ||||| ||| || | | || || || |||||||| Sbjct 4718 CTGTTGCATATTTAGCTCTTGTTGTAGCCGCTACTACTGTTTTCTTGATCTATCCT 4773 >seq95291 Length=6073 Score = 183 bits (202), Expect = 4e-41 Identities = 273/379 (72%), Gaps = 10/379 (3%) Strand=Plus/Minus Query 188878 AACCGTCTGTATGTCGGTTGGTTCGGTGTCCTGATGATCCCTACGCTTCTCGCTGCAACC 188937 || ||||| || | || ||||| | ||| ||||||| ||||| | | |||||| Sbjct 6034 AATCGTCTTTACATTGGATGGTTTGATGTTTTGATGATTCCTACTTTATTGACTGCAAAT 5975 Query 188938 ATCTGC-TTCATCGTCGCCTTTGTCGCTGCACCCCCTGTAGACATTGATGGCATCCGCGA 188996 |||| || || |||| ||| ||||||| || || ||||| |||||||| || || || Sbjct 5974 -TCTGTATTTATTATCGCTTTTATCGCTGCCCCTCCAGTAGATATTGATGGTATTCGTGA 5916 Query 188997 ACCCGTCGCTGGTTCACTCATGTATGGAAACAACATCATCTCTGGTGCTGTTGTCCCTTC 189056 | || |||| || || | ||||||||||| ||||| | |||||| || | ||| | Sbjct 5915 GCTTGTTTCTGGATCTCTACTTTATGGAAACAATATCATTTTTGGTGCGATTATTCCTAC 5856 Query 189057 ATCCAACGCAATTGGTCTTCACTTCTACCCCATCTGGGAAGCCGCCTCACTCGATGAGTG 189116 || || || ||| | || || || || ||||||||||| || || | |||||||| Sbjct 5855 TTCTGCGGCTATAGGTTTGCATTTTTATCCGATCTGGGAAGCAGCTTCTGTTGATGAGTG 5796 Query 189117 GCTCTACAACGGTGGTCCTTTCCAACTGGTAGTCTTCCACTTCCTCATCGGCATCTACGC 189176 | | |||||||| ||||||| |||| | || | |||||| | | || | || || Sbjct 5795 GTTATACAACGGCGGTCCTTATGAACTAATTGTTCTACACTTCTTACTTGG--TGTA-GC 5739 Query 189177 ---CTACATGGGTCGTGAGTGGGAACTCTCTTACCGTCTCGGTATGCGTCCTTGGATCTG 189233 |||||||||||||||||||||||| || ||||| ||||||||||||||||| || Sbjct 5738 TTGCTACATGGGTCGTGAGTGGGAACTTAGTTTTCGTCTGGGTATGCGTCCTTGGAT-TG 5680 Query 189234 C-ATTGCTTACTCTGCACC 189251 | |||| || || || || Sbjct 5679 CTGTTGCATATTCAGCTCC 5661 >seq13836 Length=10167 Score = 129 bits (142), Expect = 7e-25 Identities = 146/193 (76%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 190266 GGGGGACTCTGGGCTTTTGTGGCGCTCCACGGGGCTTTCGCTCTAATTGGATTCATGCTT 190325 || || || ||| ||||||| || |||||||| ||||||| |||| || |||||| | Sbjct 4470 GGCGGTCTGTGGACTTTTGTTGCTCTCCACGGTGCTTTCGGATTAATAGGGTTCATGTTA 4529 Query 190326 CGTCAGTTTGAACTGGCACG-TCTCATCGGTATCCGTCCTTACAATGCTATTGCGTTCTC 190384 ||||| |||||||| || || ||| || | | || ||||| ||||| | || ||||| Sbjct 4530 CGTCAATTTGAACTTGCTCGATCTGTTCAAT-TGCGACCTTATAATGCAACCGCATTCTC 4588 Query 190385 TGGTCCTATCGCTGTTTTTGTTAGCGTCTTTCTCATCTACCCTCTGGGTCAATCGAGTTG 190444 ||||| || |||||||||||| || || || || || || |||||||| || |||| Sbjct 4589 AGGTCCAATTGCTGTTTTTGTTTTTGTATTCCTTATTTATCCACTGGGTCAGTCTGGTTG 4648 Query 190445 GTTCTTCGCGCCA 190457 |||||| || ||| Sbjct 4649 GTTCTTTGCTCCA 4661 >seq78999 Length=659 Score = 104 bits (114), Expect = 3e-17 Identities = 163/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 190692 AACCGTTTCTGGTCTCAAATCTTTGGTGTTGCGTTCAGTAATAAGAGGTGGTTGCATTTC 190751 || || || ||||| |||||||| ||||| ||| ||||| | ||||| | || | Sbjct 321 AATCGCTTTTGGTCATAAATCTTTAAGGTTGCTTTCTTCAATAAATGTTGGTTACGTT-C 263 Query 190752 TTTATGCTCTTTGTTCCTGTTATGGGTCTGTGGACTTCTTCCATCGGTATTATTGGTCTT 190811 | |||| | ||||| || || | ||| | ||| | | | || | || || | Sbjct 262 TGTATGTTATTTGTACCAGTAACTGGTTTACGGATCATTACTTTTGGGGTAGTTAGTTTG 203 Query 190812 GCTCTCAACCTTCGTGCTTATGACTTTGTATCCCAAGAGATCAGAGCAGCAGAAGATCCA 190871 || || ||||| ||||||||||||||||| || |||| || | | |||||||||||| Sbjct 202 GCCCTAAACCTACGTGCTTATGACTTTGTTTCTAAAGAAATTCGTGGAGCAGAAGATCCT 143 Query 190872 GAGTTCGAGACTTTTTACACAAAAAATATACTTTTGAATGAAGGTCTTCGT 190922 | || |||||||| ||||| |||| ||| | || || |||||| ||||| Sbjct 142 TA-TTTGAGACTTTCTACACCAAAAGTATTTTCTTAAACGAAGGTATTCGT 93 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 632304298590000