Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Vigna_20unguiculata_20subsp._20unguiculata_20[genbank_20GCA_5F001687
525.1_202016-07-20] 224,035 sequences; 695,045,594 total letters
Query= NC_031922.1
Length=174830
Score E
Sequences producing significant alignments: (Bits) Value
seq80997 230 3e-55
seq95291 205 1e-47
seq13836 105 7e-18
seq78999 98.7 1e-15
>seq80997
Length=4773
Score = 230 bits (254), Expect = 3e-55
Identities = 302/413 (73%), Gaps = 4/413 (1%)
Strand=Plus/Plus
Query 160599 AATCGTCTTTACGTCGGTTGGTTCGGTGTGCTGATGATCCCAACTCTGTTGGCAGCAACC 160658
|||||||||||| | || ||||| ||||| ||||||| || ||| | ||| | |||| |
Sbjct 4363 AATCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATTCCTACTTTATTGACTGCAA-C 4421
Query 160659 GTCTG-CTTTATTACTGCGTTCGTTGCTGCTCCCCCCGTGGACATCGACGGTATCCGTGA 160717
|||| ||||||| || || | ||||| || || || || || || ||||| |||||
Sbjct 4422 TTCTGTATTTATTATCGCTTTTATCGCTGCCCCTCCAGTAGATATTGATGGTATTCGTGA 4481
Query 160718 ACCCGTTGCTGGTTCACTGATGTATGGAAACAACATCATCTCTGGTGCAGTTGTTCCTTC 160777
|| ||| |||| || || | ||||||||||| ||||| |||||||| || ||||| |
Sbjct 4482 GCCTGTTTCTGGATCTCTACTTTATGGAAACAATATCATTTCTGGTGCGATTATTCCTAC 4541
Query 160778 TTCCAACGCAATTGGTCTTCACTTCTACCCCATTTGGGAAGCTGCATCTCTTGATGAATG 160837
||| || || ||| | || || || || || |||||||| || ||| ||||||| ||
Sbjct 4542 TTCTGCGGCTATAGGTTTGCATTTTTATCCGATCTGGGAAGCAGCTTCTGTTGATGAGTG 4601
Query 160838 GCTCTACAATGGTGGTCCTTACCAACTGGTCGTATTTCACTTCCTGATCGGCATCTTCTG 160897
| | ||||| || |||||||| |||| | || | |||||| | | || | ||
Sbjct 4602 GTTATACAACGGCGGTCCTTATGAACTAATTGTTCTACACTTCTTACTTGGTGTAGCTTG 4661
Query 160898 CTACATGGGTCGCGAGTGGGAACTTTCCTACCGCCTCGGCATGCGCCCCTGGATCTGC-G 160956
|||||||||||| |||||||||||| | || || || ||||| || ||||| ||| |
Sbjct 4662 CTACATGGGTCGTGAGTGGGAACTTAGTTTTCGTCTGGGTATGCGTCCTTGGAT-TGCTG 4720
Query 160957 TTGCATATTCTGCACCTGTTGCTGCTGCGAGTGCAGTATTCCTCGTCTATCCT 161009
||||||||| || | ||||| || || | | | || ||| | ||||||||
Sbjct 4721 TTGCATATTTAGCTCTTGTTGTAGCCGCTACTACTGTTTTCTTGATCTATCCT 4773
>seq95291
Length=6073
Score = 205 bits (226), Expect = 1e-47
Identities = 274/376 (73%), Gaps = 4/376 (1%)
Strand=Plus/Minus
Query 160599 AATCGTCTTTACGTCGGTTGGTTCGGTGTGCTGATGATCCCAACTCTGTTGGCAGCAACC 160658
|||||||||||| | || ||||| | ||| ||||||| || ||| | ||| | ||||
Sbjct 6034 AATCGTCTTTACATTGGATGGTTTGATGTTTTGATGATTCCTACTTTATTGACTGCAAAT 5975
Query 160659 GTCTGC-TTTATTACTGCGTTCGTTGCTGCTCCCCCCGTGGACATCGACGGTATCCGTGA 160717
|||| ||||||| || || | ||||| || || || || || || ||||| |||||
Sbjct 5974 -TCTGTATTTATTATCGCTTTTATCGCTGCCCCTCCAGTAGATATTGATGGTATTCGTGA 5916
Query 160718 ACCCGTTGCTGGTTCACTGATGTATGGAAACAACATCATCTCTGGTGCAGTTGTTCCTTC 160777
| ||| |||| || || | ||||||||||| ||||| | |||||| || ||||| |
Sbjct 5915 GCTTGTTTCTGGATCTCTACTTTATGGAAACAATATCATTTTTGGTGCGATTATTCCTAC 5856
Query 160778 TTCCAACGCAATTGGTCTTCACTTCTACCCCATTTGGGAAGCTGCATCTCTTGATGAATG 160837
||| || || ||| | || || || || || |||||||| || ||| ||||||| ||
Sbjct 5855 TTCTGCGGCTATAGGTTTGCATTTTTATCCGATCTGGGAAGCAGCTTCTGTTGATGAGTG 5796
Query 160838 GCTCTACAATGGTGGTCCTTACCAACTGGTCGTATTTCACTTCCTGATCGGCATCTTCTG 160897
| | ||||| || |||||||| |||| | || | |||||| | | || | ||
Sbjct 5795 GTTATACAACGGCGGTCCTTATGAACTAATTGTTCTACACTTCTTACTTGGTGTAGCTTG 5736
Query 160898 CTACATGGGTCGCGAGTGGGAACTTTCCTACCGCCTCGGCATGCGCCCCTGGATCTGC-G 160956
|||||||||||| |||||||||||| | || || || ||||| || ||||| ||| |
Sbjct 5735 CTACATGGGTCGTGAGTGGGAACTTAGTTTTCGTCTGGGTATGCGTCCTTGGAT-TGCTG 5677
Query 160957 TTGCATATTCTGCACC 160972
|||||||||| || ||
Sbjct 5676 TTGCATATTCAGCTCC 5661
>seq13836
Length=10167
Score = 105 bits (116), Expect = 7e-18
Identities = 138/191 (72%), Gaps = 0/191 (0%)
Strand=Plus/Plus
Query 164166 GGGGGACTCTGGGCTTTTGTGGCGTTCCACGGATCTTTCGCTCTGATCGGTTTCATGCTT 164225
|| || || ||| ||||||| || ||||||| |||||| | || || |||||| |
Sbjct 4470 GGCGGTCTGTGGACTTTTGTTGCTCTCCACGGTGCTTTCGGATTAATAGGGTTCATGTTA 4529
Query 164226 CGGCAGTTTGAAATTGCACGTCTTGTAGGTATCCGTCCGTACAATGCTATTGCGTTCTCT 164285
|| || |||||| |||| || ||| | || || || ||||| | || |||||
Sbjct 4530 CGTCAATTTGAACTTGCTCGATCTGTTCAATTGCGACCTTATAATGCAACCGCATTCTCA 4589
Query 164286 GGTCCGATTGCTGTCTTTGTCAGCGTTTTCCTTATGTACCCTCTCGGGCAATCTAGTTGG 164345
||||| |||||||| ||||| || |||||||| || || || || || ||| |||||
Sbjct 4590 GGTCCAATTGCTGTTTTTGTTTTTGTATTCCTTATTTATCCACTGGGTCAGTCTGGTTGG 4649
Query 164346 TTCTTTGCCCC 164356
|||||||| ||
Sbjct 4650 TTCTTTGCTCC 4660
>seq78999
Length=659
Score = 98.7 bits (108), Expect = 1e-15
Identities = 168/241 (70%), Gaps = 2/241 (1%)
Strand=Plus/Minus
Query 164592 AACCGCTTCTGGTCTCAGATTTTTGGTATTGCTTTCAGCAATAAGCGTTGGTTGCACTTC 164651
|| ||||| ||||| | || ||| |||||||| |||||| ||||||| | |||
Sbjct 321 AATCGCTTTTGGTCATAAATCTTTAAGGTTGCTTTCTTCAATAAATGTTGGTTACG-TTC 263
Query 164652 TTTATGCTCTTTGTTCCTGTCATGGGACTTTGGACAAGTTCTATTGGTATCATCGGTCTC 164711
| |||| | ||||| || || | || | ||| | | || |||| | | || |
Sbjct 262 TGTATGTTATTTGTACCAGTAACTGGTTTACGGATCATTACTTTTGGGGTAGTTAGTTTG 203
Query 164712 GCACTCAATCTTCGTGCTTATGATTTTGTGTCTCAGGAGATTAGAGCAGCAGAGGATCCT 164771
|| || || || ||||||||||| ||||| ||| | || ||| | | |||||| ||||||
Sbjct 202 GCCCTAAACCTACGTGCTTATGACTTTGTTTCTAAAGAAATTCGTGGAGCAGAAGATCCT 143
Query 164772 GAATTTGAGACGTTCTATACGAAGAACATCCTCCTCAATGAAGGACTCCGTGCCTGGATG 164831
||||||||| ||||| || || | || || | || ||||| | |||| ||||||
Sbjct 142 -TATTTGAGACTTTCTACACCAAAAGTATTTTCTTAAACGAAGGTATTCGTGGGTGGATG 84
Query 164832 G 164832
|
Sbjct 83 G 83
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 557761636894000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |