Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vigna_20unguiculata_20subsp._20unguiculata_20[genbank_20GCA_5F001687 525.1_202016-07-20] 224,035 sequences; 695,045,594 total letters Query= NC_031922.1 Length=174830 Score E Sequences producing significant alignments: (Bits) Value seq80997 230 3e-55 seq95291 205 1e-47 seq13836 105 7e-18 seq78999 98.7 1e-15 >seq80997 Length=4773 Score = 230 bits (254), Expect = 3e-55 Identities = 302/413 (73%), Gaps = 4/413 (1%) Strand=Plus/Plus Query 160599 AATCGTCTTTACGTCGGTTGGTTCGGTGTGCTGATGATCCCAACTCTGTTGGCAGCAACC 160658 |||||||||||| | || ||||| ||||| ||||||| || ||| | ||| | |||| | Sbjct 4363 AATCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATTCCTACTTTATTGACTGCAA-C 4421 Query 160659 GTCTG-CTTTATTACTGCGTTCGTTGCTGCTCCCCCCGTGGACATCGACGGTATCCGTGA 160717 |||| ||||||| || || | ||||| || || || || || || ||||| ||||| Sbjct 4422 TTCTGTATTTATTATCGCTTTTATCGCTGCCCCTCCAGTAGATATTGATGGTATTCGTGA 4481 Query 160718 ACCCGTTGCTGGTTCACTGATGTATGGAAACAACATCATCTCTGGTGCAGTTGTTCCTTC 160777 || ||| |||| || || | ||||||||||| ||||| |||||||| || ||||| | Sbjct 4482 GCCTGTTTCTGGATCTCTACTTTATGGAAACAATATCATTTCTGGTGCGATTATTCCTAC 4541 Query 160778 TTCCAACGCAATTGGTCTTCACTTCTACCCCATTTGGGAAGCTGCATCTCTTGATGAATG 160837 ||| || || ||| | || || || || || |||||||| || ||| ||||||| || Sbjct 4542 TTCTGCGGCTATAGGTTTGCATTTTTATCCGATCTGGGAAGCAGCTTCTGTTGATGAGTG 4601 Query 160838 GCTCTACAATGGTGGTCCTTACCAACTGGTCGTATTTCACTTCCTGATCGGCATCTTCTG 160897 | | ||||| || |||||||| |||| | || | |||||| | | || | || Sbjct 4602 GTTATACAACGGCGGTCCTTATGAACTAATTGTTCTACACTTCTTACTTGGTGTAGCTTG 4661 Query 160898 CTACATGGGTCGCGAGTGGGAACTTTCCTACCGCCTCGGCATGCGCCCCTGGATCTGC-G 160956 |||||||||||| |||||||||||| | || || || ||||| || ||||| ||| | Sbjct 4662 CTACATGGGTCGTGAGTGGGAACTTAGTTTTCGTCTGGGTATGCGTCCTTGGAT-TGCTG 4720 Query 160957 TTGCATATTCTGCACCTGTTGCTGCTGCGAGTGCAGTATTCCTCGTCTATCCT 161009 ||||||||| || | ||||| || || | | | || ||| | |||||||| Sbjct 4721 TTGCATATTTAGCTCTTGTTGTAGCCGCTACTACTGTTTTCTTGATCTATCCT 4773 >seq95291 Length=6073 Score = 205 bits (226), Expect = 1e-47 Identities = 274/376 (73%), Gaps = 4/376 (1%) Strand=Plus/Minus Query 160599 AATCGTCTTTACGTCGGTTGGTTCGGTGTGCTGATGATCCCAACTCTGTTGGCAGCAACC 160658 |||||||||||| | || ||||| | ||| ||||||| || ||| | ||| | |||| Sbjct 6034 AATCGTCTTTACATTGGATGGTTTGATGTTTTGATGATTCCTACTTTATTGACTGCAAAT 5975 Query 160659 GTCTGC-TTTATTACTGCGTTCGTTGCTGCTCCCCCCGTGGACATCGACGGTATCCGTGA 160717 |||| ||||||| || || | ||||| || || || || || || ||||| ||||| Sbjct 5974 -TCTGTATTTATTATCGCTTTTATCGCTGCCCCTCCAGTAGATATTGATGGTATTCGTGA 5916 Query 160718 ACCCGTTGCTGGTTCACTGATGTATGGAAACAACATCATCTCTGGTGCAGTTGTTCCTTC 160777 | ||| |||| || || | ||||||||||| ||||| | |||||| || ||||| | Sbjct 5915 GCTTGTTTCTGGATCTCTACTTTATGGAAACAATATCATTTTTGGTGCGATTATTCCTAC 5856 Query 160778 TTCCAACGCAATTGGTCTTCACTTCTACCCCATTTGGGAAGCTGCATCTCTTGATGAATG 160837 ||| || || ||| | || || || || || |||||||| || ||| ||||||| || Sbjct 5855 TTCTGCGGCTATAGGTTTGCATTTTTATCCGATCTGGGAAGCAGCTTCTGTTGATGAGTG 5796 Query 160838 GCTCTACAATGGTGGTCCTTACCAACTGGTCGTATTTCACTTCCTGATCGGCATCTTCTG 160897 | | ||||| || |||||||| |||| | || | |||||| | | || | || Sbjct 5795 GTTATACAACGGCGGTCCTTATGAACTAATTGTTCTACACTTCTTACTTGGTGTAGCTTG 5736 Query 160898 CTACATGGGTCGCGAGTGGGAACTTTCCTACCGCCTCGGCATGCGCCCCTGGATCTGC-G 160956 |||||||||||| |||||||||||| | || || || ||||| || ||||| ||| | Sbjct 5735 CTACATGGGTCGTGAGTGGGAACTTAGTTTTCGTCTGGGTATGCGTCCTTGGAT-TGCTG 5677 Query 160957 TTGCATATTCTGCACC 160972 |||||||||| || || Sbjct 5676 TTGCATATTCAGCTCC 5661 >seq13836 Length=10167 Score = 105 bits (116), Expect = 7e-18 Identities = 138/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 164166 GGGGGACTCTGGGCTTTTGTGGCGTTCCACGGATCTTTCGCTCTGATCGGTTTCATGCTT 164225 || || || ||| ||||||| || ||||||| |||||| | || || |||||| | Sbjct 4470 GGCGGTCTGTGGACTTTTGTTGCTCTCCACGGTGCTTTCGGATTAATAGGGTTCATGTTA 4529 Query 164226 CGGCAGTTTGAAATTGCACGTCTTGTAGGTATCCGTCCGTACAATGCTATTGCGTTCTCT 164285 || || |||||| |||| || ||| | || || || ||||| | || ||||| Sbjct 4530 CGTCAATTTGAACTTGCTCGATCTGTTCAATTGCGACCTTATAATGCAACCGCATTCTCA 4589 Query 164286 GGTCCGATTGCTGTCTTTGTCAGCGTTTTCCTTATGTACCCTCTCGGGCAATCTAGTTGG 164345 ||||| |||||||| ||||| || |||||||| || || || || || ||| ||||| Sbjct 4590 GGTCCAATTGCTGTTTTTGTTTTTGTATTCCTTATTTATCCACTGGGTCAGTCTGGTTGG 4649 Query 164346 TTCTTTGCCCC 164356 |||||||| || Sbjct 4650 TTCTTTGCTCC 4660 >seq78999 Length=659 Score = 98.7 bits (108), Expect = 1e-15 Identities = 168/241 (70%), Gaps = 2/241 (1%) Strand=Plus/Minus Query 164592 AACCGCTTCTGGTCTCAGATTTTTGGTATTGCTTTCAGCAATAAGCGTTGGTTGCACTTC 164651 || ||||| ||||| | || ||| |||||||| |||||| ||||||| | ||| Sbjct 321 AATCGCTTTTGGTCATAAATCTTTAAGGTTGCTTTCTTCAATAAATGTTGGTTACG-TTC 263 Query 164652 TTTATGCTCTTTGTTCCTGTCATGGGACTTTGGACAAGTTCTATTGGTATCATCGGTCTC 164711 | |||| | ||||| || || | || | ||| | | || |||| | | || | Sbjct 262 TGTATGTTATTTGTACCAGTAACTGGTTTACGGATCATTACTTTTGGGGTAGTTAGTTTG 203 Query 164712 GCACTCAATCTTCGTGCTTATGATTTTGTGTCTCAGGAGATTAGAGCAGCAGAGGATCCT 164771 || || || || ||||||||||| ||||| ||| | || ||| | | |||||| |||||| Sbjct 202 GCCCTAAACCTACGTGCTTATGACTTTGTTTCTAAAGAAATTCGTGGAGCAGAAGATCCT 143 Query 164772 GAATTTGAGACGTTCTATACGAAGAACATCCTCCTCAATGAAGGACTCCGTGCCTGGATG 164831 ||||||||| ||||| || || | || || | || ||||| | |||| |||||| Sbjct 142 -TATTTGAGACTTTCTACACCAAAAGTATTTTCTTAAACGAAGGTATTCGTGGGTGGATG 84 Query 164832 G 164832 | Sbjct 83 G 83 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 557761636894000