Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vitis_20aestivalis_20[genbank_20GCA_5F001562795.1_202016-02-17] 756,125 sequences; 432,755,284 total letters Query= AAMG01000383.1 Length=435 Score E Sequences producing significant alignments: (Bits) Value seq748765 147 6e-33 seq180117 102 2e-19 seq507796 84.2 6e-14 seq393510 77.0 8e-12 seq57277 75.2 3e-11 >seq748765 Length=357 Score = 147 bits (162), Expect = 6e-33 Identities = 135/171 (79%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 167 ACTAGAGTGTGTCAGAGGGGGGTGGAATTCCACGTGTAGCAGTGAAATGCGTAGATATGT 226 ||| ||||| | |||||| | |||||||| | |||||| ||||||| || |||| | Sbjct 326 ACTTGAGTGAGACAGAGGAGAGTGGAATTTCGTGTGTAGGGGTGAAATCCGGAGATCTAC 267 Query 227 GGAGGAACACCAATGGCGAAGGCAGCCCCCTGGGATAACACTGACGCTCATGCACGAAAG 286 | |||||| |||| ||||||||||| | ||||| || |||||| | |||||| Sbjct 266 GAAGGAACGCCAAAAGCGAAGGCAGCTCTCTGGGTCCCTACCGACGCTGGGGTGCGAAAG 207 Query 287 CGTGGGGAGCAAACAGGATTAGATACCCTGGTAGTCCACGCCCTAAACGAT 337 | |||||||||||| ||||||||||||||||||||||| ||| |||||||| Sbjct 206 CATGGGGAGCAAACGGGATTAGATACCCTGGTAGTCCATGCCGTAAACGAT 156 >seq180117 Length=395 Score = 102 bits (112), Expect = 2e-19 Identities = 106/139 (76%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 3 TACCTGAAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGC 62 || || | |||||| || ||||||||| ||||||||||||||||||||| ||| ||| Sbjct 184 TATCTAAGGAATAAACATCGGCTAACTCTATGCCAGCAGCCGCGGTAATACAAAGGATGC 125 Query 63 AAGCGTTAATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGTTGTGTAAGACAGGTGT 122 ||| |||| |||||| | ||| |||| ||||| | ||| || | | |||| | | || Sbjct 124 AAGTGTTATCCGGAATGATTGGACGTATAGCGTCTGTAGGTGGCTTTTTAAGTCCGCCGT 65 Query 123 GAAATCCCCGGGCTTAACC 141 ||||||| |||| |||| Sbjct 64 CAAATCCCAAGGCTCAACC 46 >seq507796 Length=1569 Score = 84.2 bits (92), Expect = 6e-14 Identities = 218/328 (66%), Gaps = 12/328 (4%) Strand=Plus/Minus Query 11 GAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGCAAGCGTTA 70 ||||||||| || |||||| ||| || || | | |||||| ||| |||||| |||| Sbjct 1422 GAATAAGCATCGTCTAACTCTATGCTAGTAGTCACAGTAATATAGAGGATGCAAGTGTTA 1363 Query 71 ATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGTTGTGTAAGACAGGTGTGAAATCCC 130 || |||| | |||||||||||||| ||| |||| | |||| | | | ||||||| Sbjct 1362 TTCAGAATGATTGGGCGTAAAGCGTTAATAGGTGGTTTTTTAAGTCTGCCTTTAAATCCC 1303 Query 131 CGGGCTTAACCTGGGAATTGCATTTGTGACT-GCACGACTAGAGTGTGTCAGAGGGGGGT 189 |||| |||| | || | | ||| || | ||| | || |||| Sbjct 1302 GAGGCTCAACCCTAAACAGGCGGTCGAAACTACCAAGGGTAG-GAGT---AGAG------ 1253 Query 190 GGAATTCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGAACACCAATGGCGAAGGC 249 |||||| || ||||||||||||| |||| || | | || ||||| | | | || Sbjct 1252 GGAATTTTTTATGGAGCAGTGAAATGCATAGAGATTGGAAATAATACCAACGACAAGAGC 1193 Query 250 AGCCCCCTGGGATAACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAACAGGATTAGA 309 | | || || | ||| ||| || | |||||||| |||||| || ||||||| Sbjct 1192 ACTCTACTAGGCTGACATTGATACTGAGAGACGAAAGCTAGGGGAGTGAATGAGATTAGA 1133 Query 310 TACCCTGGTAGTCCACGCCCTAAACGAT 337 ||||| ||||||| | | |||| ||| Sbjct 1132 TACCC-AGTAGTCCTAGTCGTAAATGAT 1106 >seq393510 Length=226 Score = 77.0 bits (84), Expect = 8e-12 Identities = 98/134 (73%), Gaps = 6/134 (4%) Strand=Plus/Minus Query 190 GGAATTCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGAACACCAATGGCGAAGGC 249 |||||| | ||| ||| |||||||||||||| || | | |||||||||||||||| Sbjct 189 GGAATTTCCGGTGGAGCTGTGAAATGCGTAGAGATCGGAAAGAACACCAATGGCGAA--- 133 Query 250 AGCCCCCTGGGATAACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAACAGGATTAGA 309 ||| | || || | ||| || | |||||||| |||| |||| |||||||| Sbjct 132 AGCACTTTG---CAAGGCCGACACTGAGAGACGAAAGCTAAGGGAACAAATGGGATTAGA 76 Query 310 TACCCTGGTAGTCC 323 ||||| ||||||| Sbjct 75 TACCCCAGTAGTCC 62 >seq57277 Length=288 Score = 75.2 bits (82), Expect = 3e-11 Identities = 67/83 (81%), Gaps = 2/83 (2%) Strand=Plus/Minus Query 12 AATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTA--GGGTGCAAGCGTT 69 || |||| |||||||||| ||||||| ||| || ||||| ||| ||| ||||| ||| Sbjct 176 AAGAAGCCCCGGCTAACTTCGTGCCAACAGTCGTGGTAAGACGGGAGGGGGGCAAGTGTT 117 Query 70 AATCGGAATTACTGGGCGTAAAG 92 ||||||| ||||||||||||| Sbjct 116 CTTCGGAATGACTGGGCGTAAAG 94 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1279849012000