Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Vitis_20aestivalis_20[genbank_20GCA_5F001562795.1_202016-02-17]
756,125 sequences; 432,755,284 total letters
Query= AAMG01001083.1
Length=339
Score E
Sequences producing significant alignments: (Bits) Value
seq284855 147 4e-33
seq112193 136 8e-30
seq273235 114 3e-23
seq534392 105 1e-20
seq440652 102 2e-19
seq675954 89.7 1e-15
seq119143 89.7 1e-15
seq718024 86.0 1e-14
>seq284855
Length=414
Score = 147 bits (162), Expect = 4e-33
Identities = 172/230 (75%), Gaps = 2/230 (1%)
Strand=Plus/Plus
Query 111 GGGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGC 170
|||||||| |||| | |||||| ||||||| |||||||||| |||||||| ||
Sbjct 31 GGGACAGTCTCAGGTAGACAGTTTTTATGGGGCGTAGGCCTCCCAAAAGGTAACGGAAGC 90
Query 171 GCCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCAC-AGTGCAAAGGCAAAAGGGT 229
||||| | |||| | | ||| ||| | || | | |||||||||| | ||| |
Sbjct 91 ATGCAAAGGTTTCCTCGGGTCGGACGGAGATTG-GCCCTCGAGTGCAAAGGTAGAAGAGA 149
Query 230 GTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGG 289
| |||||||| | |||| | || |||||||| ||||||||| |||| ||||| | |||
Sbjct 150 GCTTGACTGCAAGACCCACCCATCGAGCAGGGAGGAAAGTCGGCCTTAGTGATCTGACGG 209
Query 290 TGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339
||| || ||||| ||| |||||| ||||||||||| ||| || ||||||
Sbjct 210 TGCCGAGTGGAAGAGCCATCGCTCAACGGATAAAAGTTACTCTAGGGATA 259
>seq112193
Length=946
Score = 136 bits (150), Expect = 8e-30
Identities = 169/229 (74%), Gaps = 2/229 (1%)
Strand=Plus/Plus
Query 111 GGGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGC 170
|||||||| |||| | |||||| |||||| |||||||||| ||||||||||
Sbjct 585 GGGACAGTCTCAGGTAGACAGTTTCTATGGGGCATAGGCCTCCCAAAAGGTAACGGAGGT 644
Query 171 GCCCAAAGATACCCTC-AGCTTGGATGGAAACCATGCGCACAGTGCAAAGGCAAAAGGGT 229
| ||||| | |||| ||| ||| ||| | | |||||||||||| |||||
Sbjct 645 GTGCAAAGGTTTCCTCTAGCC-GGACGGAGATTGGTCCTCGAGTGCAAAGGCAGAAGGGA 703
Query 230 GTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGG 289
| |||||| | | ||| | ||| || ||||| |||||| || |||| ||||||| | |
Sbjct 704 GCTTGACTACAAGACCTACCTGTCGAGTAGGGAAGAAAGTTGGCCTTAGTGATCCGACAG 763
Query 290 TGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGAT 338
||| || ||||| || |||||||| ||||||||||| ||| || |||||
Sbjct 764 TGCCGAGTGGAAGGGTCGTCGCTCAACGGATAAAAGTTACTCTAGGGAT 812
>seq273235
Length=278
Score = 114 bits (126), Expect = 3e-23
Identities = 134/176 (76%), Gaps = 4/176 (2%)
Strand=Plus/Minus
Query 138 TGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGCGCCCAAAGATACCCTC-AGCTTGGATG 196
||||||| |||||||||| |||||||||||| ||||| | ||| ||| |||
Sbjct 224 TGGGGCGTAGGCCTCCCAAAAGGTAACGGAGGCGTGCAAAGGTTTCCTTGAGCC-GGACA 166
Query 197 GAAACCATGCGCAC-AGTGCAAAGGCAAAAGGGTGTTTGACTGCGACACCCTCAAGTCTA 255
|| | || | | |||||||||||| ||||| | |||||| | | |||| | ||| |
Sbjct 165 GAGATTG-GCCCTCGAGTGCAAAGGCAGAAGGGAGCTTGACTACAAGACCCACCCGTCGA 107
Query 256 GCAGGGACGAAAGTCGGGCTTAATGATCCGGCGGTGCTGAATGGAACGGCCGTCGC 311
||||||||||||||||| |||| ||||||| |||||| || ||||| || ||| ||
Sbjct 106 GCAGGGACGAAAGTCGGTCTTAGTGATCCGACGGTGCCGAGTGGAAGGGTCGTTGC 51
>seq534392
Length=608
Score = 105 bits (116), Expect = 1e-20
Identities = 141/195 (72%), Gaps = 6/195 (3%)
Strand=Plus/Plus
Query 148 GCCTCCCAAAGAGTAACGGAGGCGCCCAAAGATACCCTCAGCTTGGATGGAAACCATGCG 207
|||||||||| |||||||||| | ||| | | ||||| | ||| ||| ||| |
Sbjct 304 GCCTCCCAAAAGGTAACGGAGGTGTACAAGGGTTTCCTCAAGTCGGACGGA---CATTGG 360
Query 208 CAC---AGTGCAAAGGCAAAAGGGTGTTTGACTGCGACACCCTCAAGTCTAGCAGGGACG 264
| | |||||||||||| |||| | |||| | | | |||| | ||| || |||| ||
Sbjct 361 CTCTTAAGTGCAAAGGCAGAAGGAAGCTTGATTACAAGACCCACCCGTCAAGTAGGGGCG 420
Query 265 AAAGTCGGGCTTAATGATCCGGCGGTGCTGAATGGAACGGCCGTCGCTCGACGGATAAAA 324
||||| || ||| |||| | |||||| || ||||| || |||| ||| | |||||||
Sbjct 421 AAAGTTGGCTTTAGTGATTCAACGGTGCCGAGTGGAAGGGTCGTCACTCAATAGATAAAA 480
Query 325 GCTACCCTGGGGATA 339
| ||| || ||||||
Sbjct 481 GTTACTCTAGGGATA 495
>seq440652
Length=694
Score = 102 bits (112), Expect = 2e-19
Identities = 100/129 (78%), Gaps = 0/129 (0%)
Strand=Plus/Minus
Query 211 AGTGCAAAGGCAAAAGGGTGTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTC 270
||||||||| || ||||| | |||||||| | | | | ||| ||||||||| |||||
Sbjct 228 AGTGCAAAGACAGAAGGGAGCTTGACTGCAAGATCTACCCGTCGAGCAGGGACAAAAGTT 169
Query 271 GGGCTTAATGATCCGGCGGTGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACC 330
|| |||| |||| || |||||| | ||||| || || |||| ||||||||||| |||
Sbjct 168 GGTCTTAGTGATTCGACGGTGCCAAGTGGAAGGGTTGTAGCTCAACGGATAAAAGTTACT 109
Query 331 CTGGGGATA 339
|| ||||||
Sbjct 108 CTAGGGATA 100
>seq675954
Length=4236
Score = 89.7 bits (98), Expect = 1e-15
Identities = 144/203 (71%), Gaps = 3/203 (1%)
Strand=Plus/Minus
Query 138 TGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGCGCCCAAAGATACCCTCAGCTTGGATGG 197
||||||| ||||||||| || ||| ||||| |||| | |||||| | | | ||
Sbjct 4136 TGGGGCGTAGACCTCCCAAAAGGTGACGAAGGCGTGTAAAGGTTTCCTCAGGTCGAACGG 4077
Query 198 AAACC-ATGCGCACAGTGCAAAGGCAAAAGGGTGTTTGACTGCGACA-CCCTCAAGTCTA 255
| | | | || |||| ||| ||| ||||| | ||||||| | | ||| | | |
Sbjct 4076 AGATTGACCCTCA-AGTGTAAAAGCAGAAGGGAGCTTGACTGTAAGATCCCACTCATTGA 4018
Query 256 GCAGGGACGAAAGTCGGGCTTAATGATCCGGCGGTGCTGAATGGAACGGCCGTCGCTCGA 315
|| |||||||||| || |||| ||||||| | ||| | ||||| || |||||||| |
Sbjct 4017 ACAAGGACGAAAGTTGGCCTTATTGATCCGATGATGCCAAGTGGAAAGGTCGTCGCTCAA 3958
Query 316 CGGATAAAAGCTACCCTGGGGAT 338
|||||||||| ||| || ||||
Sbjct 3957 CGGATAAAAGTTACTCTAAGGAT 3935
>seq119143
Length=1931
Score = 89.7 bits (98), Expect = 1e-15
Identities = 97/129 (75%), Gaps = 0/129 (0%)
Strand=Plus/Plus
Query 211 AGTGCAAAGGCAAAAGGGTGTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTC 270
|||||||||||| |||| | |||||||| | | || | ||| |||| ||| |||| |
Sbjct 467 AGTGCAAAGGCAGAAGGAAGCTTGACTGCAAGATCCACCCGTCGAGCAAGGATGAAATTT 526
Query 271 GGGCTTAATGATCCGGCGGTGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACC 330
| |||| |||| || ||||| | ||||| || ||| |||| | ||||||||| |||
Sbjct 527 AGCCTTAGTGATTCGATGGTGCCAAGTGGAAGGGTCGTTGCTCAATGGATAAAAGTTACT 586
Query 331 CTGGGGATA 339
|| ||||||
Sbjct 587 CTAGGGATA 595
>seq718024
Length=5020
Score = 86.0 bits (94), Expect = 1e-14
Identities = 92/122 (75%), Gaps = 0/122 (0%)
Strand=Plus/Minus
Query 211 AGTGCAAAGGCAAAAGGGTGTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTC 270
|||||||| | | |||| | |||||||| | |||| | |||||||||||| ||| ||
Sbjct 894 AGTGCAAAAGTAGAAGGAAGCTTGACTGCAAGACCCACCTATCTAGCAGGGACAAAATTC 835
Query 271 GGGCTTAATGATCCGGCGGTGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACC 330
|| |||| |||||| ||| | | ||||| || |||| ||| || |||||||| |||
Sbjct 834 GGCCTTAGTGATCCAATGGTACCAAGTGGAAGGGTCGTCACTCAACTGATAAAAGTTACT 775
Query 331 CT 332
||
Sbjct 774 CT 773
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 974971828000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |