Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vitis_20aestivalis_20[genbank_20GCA_5F001562795.1_202016-02-17] 756,125 sequences; 432,755,284 total letters Query= AAMG01001083.1 Length=339 Score E Sequences producing significant alignments: (Bits) Value seq284855 147 4e-33 seq112193 136 8e-30 seq273235 114 3e-23 seq534392 105 1e-20 seq440652 102 2e-19 seq675954 89.7 1e-15 seq119143 89.7 1e-15 seq718024 86.0 1e-14 >seq284855 Length=414 Score = 147 bits (162), Expect = 4e-33 Identities = 172/230 (75%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 111 GGGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGC 170 |||||||| |||| | |||||| ||||||| |||||||||| |||||||| || Sbjct 31 GGGACAGTCTCAGGTAGACAGTTTTTATGGGGCGTAGGCCTCCCAAAAGGTAACGGAAGC 90 Query 171 GCCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCAC-AGTGCAAAGGCAAAAGGGT 229 ||||| | |||| | | ||| ||| | || | | |||||||||| | ||| | Sbjct 91 ATGCAAAGGTTTCCTCGGGTCGGACGGAGATTG-GCCCTCGAGTGCAAAGGTAGAAGAGA 149 Query 230 GTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGG 289 | |||||||| | |||| | || |||||||| ||||||||| |||| ||||| | ||| Sbjct 150 GCTTGACTGCAAGACCCACCCATCGAGCAGGGAGGAAAGTCGGCCTTAGTGATCTGACGG 209 Query 290 TGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339 ||| || ||||| ||| |||||| ||||||||||| ||| || |||||| Sbjct 210 TGCCGAGTGGAAGAGCCATCGCTCAACGGATAAAAGTTACTCTAGGGATA 259 >seq112193 Length=946 Score = 136 bits (150), Expect = 8e-30 Identities = 169/229 (74%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 111 GGGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGC 170 |||||||| |||| | |||||| |||||| |||||||||| |||||||||| Sbjct 585 GGGACAGTCTCAGGTAGACAGTTTCTATGGGGCATAGGCCTCCCAAAAGGTAACGGAGGT 644 Query 171 GCCCAAAGATACCCTC-AGCTTGGATGGAAACCATGCGCACAGTGCAAAGGCAAAAGGGT 229 | ||||| | |||| ||| ||| ||| | | |||||||||||| ||||| Sbjct 645 GTGCAAAGGTTTCCTCTAGCC-GGACGGAGATTGGTCCTCGAGTGCAAAGGCAGAAGGGA 703 Query 230 GTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGG 289 | |||||| | | ||| | ||| || ||||| |||||| || |||| ||||||| | | Sbjct 704 GCTTGACTACAAGACCTACCTGTCGAGTAGGGAAGAAAGTTGGCCTTAGTGATCCGACAG 763 Query 290 TGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGAT 338 ||| || ||||| || |||||||| ||||||||||| ||| || ||||| Sbjct 764 TGCCGAGTGGAAGGGTCGTCGCTCAACGGATAAAAGTTACTCTAGGGAT 812 >seq273235 Length=278 Score = 114 bits (126), Expect = 3e-23 Identities = 134/176 (76%), Gaps = 4/176 (2%) Strand=Plus/Minus Query 138 TGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGCGCCCAAAGATACCCTC-AGCTTGGATG 196 ||||||| |||||||||| |||||||||||| ||||| | ||| ||| ||| Sbjct 224 TGGGGCGTAGGCCTCCCAAAAGGTAACGGAGGCGTGCAAAGGTTTCCTTGAGCC-GGACA 166 Query 197 GAAACCATGCGCAC-AGTGCAAAGGCAAAAGGGTGTTTGACTGCGACACCCTCAAGTCTA 255 || | || | | |||||||||||| ||||| | |||||| | | |||| | ||| | Sbjct 165 GAGATTG-GCCCTCGAGTGCAAAGGCAGAAGGGAGCTTGACTACAAGACCCACCCGTCGA 107 Query 256 GCAGGGACGAAAGTCGGGCTTAATGATCCGGCGGTGCTGAATGGAACGGCCGTCGC 311 ||||||||||||||||| |||| ||||||| |||||| || ||||| || ||| || Sbjct 106 GCAGGGACGAAAGTCGGTCTTAGTGATCCGACGGTGCCGAGTGGAAGGGTCGTTGC 51 >seq534392 Length=608 Score = 105 bits (116), Expect = 1e-20 Identities = 141/195 (72%), Gaps = 6/195 (3%) Strand=Plus/Plus Query 148 GCCTCCCAAAGAGTAACGGAGGCGCCCAAAGATACCCTCAGCTTGGATGGAAACCATGCG 207 |||||||||| |||||||||| | ||| | | ||||| | ||| ||| ||| | Sbjct 304 GCCTCCCAAAAGGTAACGGAGGTGTACAAGGGTTTCCTCAAGTCGGACGGA---CATTGG 360 Query 208 CAC---AGTGCAAAGGCAAAAGGGTGTTTGACTGCGACACCCTCAAGTCTAGCAGGGACG 264 | | |||||||||||| |||| | |||| | | | |||| | ||| || |||| || Sbjct 361 CTCTTAAGTGCAAAGGCAGAAGGAAGCTTGATTACAAGACCCACCCGTCAAGTAGGGGCG 420 Query 265 AAAGTCGGGCTTAATGATCCGGCGGTGCTGAATGGAACGGCCGTCGCTCGACGGATAAAA 324 ||||| || ||| |||| | |||||| || ||||| || |||| ||| | ||||||| Sbjct 421 AAAGTTGGCTTTAGTGATTCAACGGTGCCGAGTGGAAGGGTCGTCACTCAATAGATAAAA 480 Query 325 GCTACCCTGGGGATA 339 | ||| || |||||| Sbjct 481 GTTACTCTAGGGATA 495 >seq440652 Length=694 Score = 102 bits (112), Expect = 2e-19 Identities = 100/129 (78%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 211 AGTGCAAAGGCAAAAGGGTGTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTC 270 ||||||||| || ||||| | |||||||| | | | | ||| ||||||||| ||||| Sbjct 228 AGTGCAAAGACAGAAGGGAGCTTGACTGCAAGATCTACCCGTCGAGCAGGGACAAAAGTT 169 Query 271 GGGCTTAATGATCCGGCGGTGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACC 330 || |||| |||| || |||||| | ||||| || || |||| ||||||||||| ||| Sbjct 168 GGTCTTAGTGATTCGACGGTGCCAAGTGGAAGGGTTGTAGCTCAACGGATAAAAGTTACT 109 Query 331 CTGGGGATA 339 || |||||| Sbjct 108 CTAGGGATA 100 >seq675954 Length=4236 Score = 89.7 bits (98), Expect = 1e-15 Identities = 144/203 (71%), Gaps = 3/203 (1%) Strand=Plus/Minus Query 138 TGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGCGCCCAAAGATACCCTCAGCTTGGATGG 197 ||||||| ||||||||| || ||| ||||| |||| | |||||| | | | || Sbjct 4136 TGGGGCGTAGACCTCCCAAAAGGTGACGAAGGCGTGTAAAGGTTTCCTCAGGTCGAACGG 4077 Query 198 AAACC-ATGCGCACAGTGCAAAGGCAAAAGGGTGTTTGACTGCGACA-CCCTCAAGTCTA 255 | | | | || |||| ||| ||| ||||| | ||||||| | | ||| | | | Sbjct 4076 AGATTGACCCTCA-AGTGTAAAAGCAGAAGGGAGCTTGACTGTAAGATCCCACTCATTGA 4018 Query 256 GCAGGGACGAAAGTCGGGCTTAATGATCCGGCGGTGCTGAATGGAACGGCCGTCGCTCGA 315 || |||||||||| || |||| ||||||| | ||| | ||||| || |||||||| | Sbjct 4017 ACAAGGACGAAAGTTGGCCTTATTGATCCGATGATGCCAAGTGGAAAGGTCGTCGCTCAA 3958 Query 316 CGGATAAAAGCTACCCTGGGGAT 338 |||||||||| ||| || |||| Sbjct 3957 CGGATAAAAGTTACTCTAAGGAT 3935 >seq119143 Length=1931 Score = 89.7 bits (98), Expect = 1e-15 Identities = 97/129 (75%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 211 AGTGCAAAGGCAAAAGGGTGTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTC 270 |||||||||||| |||| | |||||||| | | || | ||| |||| ||| |||| | Sbjct 467 AGTGCAAAGGCAGAAGGAAGCTTGACTGCAAGATCCACCCGTCGAGCAAGGATGAAATTT 526 Query 271 GGGCTTAATGATCCGGCGGTGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACC 330 | |||| |||| || ||||| | ||||| || ||| |||| | ||||||||| ||| Sbjct 527 AGCCTTAGTGATTCGATGGTGCCAAGTGGAAGGGTCGTTGCTCAATGGATAAAAGTTACT 586 Query 331 CTGGGGATA 339 || |||||| Sbjct 587 CTAGGGATA 595 >seq718024 Length=5020 Score = 86.0 bits (94), Expect = 1e-14 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 211 AGTGCAAAGGCAAAAGGGTGTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTC 270 |||||||| | | |||| | |||||||| | |||| | |||||||||||| ||| || Sbjct 894 AGTGCAAAAGTAGAAGGAAGCTTGACTGCAAGACCCACCTATCTAGCAGGGACAAAATTC 835 Query 271 GGGCTTAATGATCCGGCGGTGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACC 330 || |||| |||||| ||| | | ||||| || |||| ||| || |||||||| ||| Sbjct 834 GGCCTTAGTGATCCAATGGTACCAAGTGGAAGGGTCGTCACTCAACTGATAAAAGTTACT 775 Query 331 CT 332 || Sbjct 774 CT 773 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 974971828000