Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Vitis_20aestivalis_20[genbank_20GCA_5F001562795.1_202016-02-17]
756,125 sequences; 432,755,284 total letters
Query= AAMG01001213.1
Length=600
Score E
Sequences producing significant alignments: (Bits) Value
seq583453 114 5e-23
seq408656 113 2e-22
seq307084 109 2e-21
seq205838 109 2e-21
seq724289 100 1e-18
seq98063 98.7 4e-18
seq45134 96.9 1e-17
seq557120 95.1 4e-17
seq86428 91.5 5e-16
seq48145 87.8 6e-15
seq710387 80.6 1e-12
>seq583453
Length=287
Score = 114 bits (126), Expect = 5e-23
Identities = 98/121 (81%), Gaps = 0/121 (0%)
Strand=Plus/Minus
Query 471 GTTTCAGGTACTATTTCACTCCCCGCCAGGGGTACTTTTCACCTTTCCCTCACGGTACTT 530
|||||| || ||||||||||||||| ||||| ||||||| | ||||||||| ||| |
Sbjct 274 GTTTCATGTTCTATTTCACTCCCCGATGGGGGTTCTTTTCATCATTCCCTCACAGTATTA 215
Query 531 GTCCGCTATCGGTCACCAAGGAGTATTTAGGCTTAACGGGTGGTCCCGCCAGATTCACAC 590
| |||||||||||||| |||||||||||| ||| |||||||| | |||||||||
Sbjct 214 CTTCGCTATCGGTCACCCAGGAGTATTTAGCCTTGTAAGGTGGTCCTTGCTGATTCACAC 155
Query 591 G 591
|
Sbjct 154 G 154
>seq408656
Length=331
Score = 113 bits (124), Expect = 2e-22
Identities = 97/120 (81%), Gaps = 0/120 (0%)
Strand=Plus/Plus
Query 470 GGTTTCAGGTACTATTTCACTCCCCGCCAGGGGTACTTTTCACCTTTCCCTCACGGTACT 529
||||||| || |||||||||||||| | ||| ||||||||| ||||||||| |||||
Sbjct 147 GGTTTCATGTTCTATTTCACTCCCCAATGGAGGTTCTTTTCACCATTCCCTCACTGTACT 206
Query 530 TGTCCGCTATCGGTCACCAAGGAGTATTTAGGCTTAACGGGTGGTCCCGCCAGATTCACA 589
|| |||||||||||||| |||||| ||||| |||| |||||| | | ||||||||
Sbjct 207 AGTTCGCTATCGGTCACCTAGGAGTGTTTAGCCTTACAAGGTGGTTCTTGCTGATTCACA 266
>seq307084
Length=221
Score = 109 bits (120), Expect = 2e-21
Identities = 138/188 (73%), Gaps = 15/188 (8%)
Strand=Plus/Plus
Query 391 TCGCAGGCTCATTCTTCAAAAGGCACGCCGTCACCTGGTACCTAAAAGGCACTTCAGCTC 450
|||| |||| ||||||||| | |||||| |||| | || | | || |||
Sbjct 46 TCGCCGGCTGATTCTTCAACAAGCACGCGGTCA----GAGCC-------CTCGTCTCCTC 94
Query 451 CGACGGATTGTAGGCAC--ATGGTTTCAGGTACTATTTCACTCCCCGCCAGGGGTACTTT 508
| || | ||| || || ||||||||| || |||||||||||| || ||||| ||||
Sbjct 95 CCACTGCTTG--GGAACTTATGGTTTCATGTTCTATTTCACTCCTCGATGGGGGTTCTTT 152
Query 509 TCACCTTTCCCTCACGGTACTTGTCCGCTATCGGTCACCAAGGAGTATTTAGGCTTAACG 568
||||| || ||||||| |||| | |||||||||||||| || ||||||||| |||
Sbjct 153 TCACCCTTTCCTCACGATACTACTTCGCTATCGGTCACCCAGAAGTATTTAGCCTTGCAA 212
Query 569 GGTGGTCC 576
||||||||
Sbjct 213 GGTGGTCC 220
>seq205838
Length=480
Score = 109 bits (120), Expect = 2e-21
Identities = 96/120 (80%), Gaps = 0/120 (0%)
Strand=Plus/Minus
Query 470 GGTTTCAGGTACTATTTCACTCCCCGCCAGGGGTACTTTTCACCTTTCCCTCACGGTACT 529
||||||| || |||||||||||||| ||||| ||||||| | ||| |||||||||||
Sbjct 334 GGTTTCATGTTCTATTTCACTCCCCAATGGGGGTTCTTTTCATCCTTCTCTCACGGTACT 275
Query 530 TGTCCGCTATCGGTCACCAAGGAGTATTTAGGCTTAACGGGTGGTCCCGCCAGATTCACA 589
|| |||||||||||||| | |||||||||| ||| |||||| | | ||||||||
Sbjct 274 AGTTCGCTATCGGTCACCTAAGAGTATTTAGCCTTTCAAGGTGGTTCTTGCTGATTCACA 215
>seq724289
Length=1343
Score = 100 bits (110), Expect = 1e-18
Identities = 114/153 (75%), Gaps = 0/153 (0%)
Strand=Plus/Plus
Query 152 ATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCACCCCTATCCACAGGTC 211
|||| ||||||||||||||| | | |||||||| |||| |||||||| || |||| ||
Sbjct 826 ATTTTGGGGAGAACCAGCTAGCTCTAAGTTTGAGTGGCATTTCACCCTTAATCACAACTC 885
Query 212 ATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGGTCTTACCCGCGCTTCA 271
|| | || | | |||||| | ||| | || | |||| || ||| | |||| ||||||
Sbjct 886 ATTCGCTTATTCTTCAACATCAGTTGATTTTGACCTCTACTTGGTTTCACCCAAGCTTCA 945
Query 272 ACCTGCCCATGGATAGATCACTTCGCTTCGGGT 304
||| ||| ||| ||||||| | |||||||
Sbjct 946 TCCTAGTTATGAATATATCACTTAGGTTCGGGT 978
>seq98063
Length=204
Score = 98.7 bits (108), Expect = 4e-18
Identities = 86/107 (80%), Gaps = 0/107 (0%)
Strand=Plus/Plus
Query 470 GGTTTCAGGTACTATTTCACTCCCCGCCAGGGGTACTTTTCACCTTTCCCTCACGGTACT 529
||||||| || |||||||||||| || ||||| ||||||||| || ||||| | ||||
Sbjct 97 GGTTTCATGTTCTATTTCACTCCTCGATGGGGGTTCTTTTCACCCTTTCCTCATGATACT 156
Query 530 TGTCCGCTATCGGTCACCAAGGAGTATTTAGGCTTAACGGGTGGTCC 576
| |||||||||||||| || ||||||||| ||| ||||||||
Sbjct 157 ACTTCGCTATCGGTCACCCAGAAGTATTTAGCCTTGCAAGGTGGTCC 203
>seq45134
Length=380
Score = 96.9 bits (106), Expect = 1e-17
Identities = 91/116 (78%), Gaps = 0/116 (0%)
Strand=Plus/Minus
Query 136 CGCTGCACCTAAATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCA 195
|||||| ||| || |||||||||||||||||| ||| | | ||| || |||| |||||
Sbjct 133 CGCTGCGCCTCAACGCATTTCGGGGAGAACCAACTAGCTCTGGGTTCGAGTGGCATTTCA 74
Query 196 CCCCTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCAC 251
|||||| ||||| |||| | || | | |||||| | ||| |||||| |||||||
Sbjct 73 CCCCTAACCACAATTCATTCGCTGATTCTTCAACATCAGTCAGTTCGGACCTCCAC 18
>seq557120
Length=752
Score = 95.1 bits (104), Expect = 4e-17
Identities = 111/150 (74%), Gaps = 0/150 (0%)
Strand=Plus/Minus
Query 143 CCTAAATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCACCCCTAT 202
||| |||| |||||| |||||| | || | | | | ||| || || | ||||| || ||
Sbjct 520 CCTCAATGTATTTCGAGGAGAATCGGCCAGCTCTAGGTTCGAGTGACATTTCAACCTTAA 461
Query 203 CCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGGTCTTACC 262
||| | ||||||||| | | |||||| | ||| ||||||| ||| ||| || | |||
Sbjct 460 CCATAACTCATCCCCTGATTCTTCAACATCAGTCGGTTCGGACCTTCACTTAGTTTCACC 401
Query 263 CGCGCTTCAACCTGCCCATGGATAGATCAC 292
| ||||| |||| ||||||||||||||
Sbjct 400 CAAACTTCATCCTGATCATGGATAGATCAC 371
>seq86428
Length=1267
Score = 91.5 bits (100), Expect = 5e-16
Identities = 98/130 (75%), Gaps = 0/130 (0%)
Strand=Plus/Plus
Query 470 GGTTTCAGGTACTATTTCACTCCCCGCCAGGGGTACTTTTCACCTTTCCCTCACGGTACT 529
||||||| | ||||||||| || | | ||| ||||||||| |||||||||||||||
Sbjct 720 GGTTTCATATTTTATTTCACTTCCTGATGGAGGTTCTTTTCACCCTTCCCTCACGGTACT 779
Query 530 TGTCCGCTATCGGTCACCAAGGAGTATTTAGGCTTAACGGGTGGTCCCGCCAGATTCACA 589
| ||||||||||||| | || ||||||| || ||||||| | ||||||||
Sbjct 780 ACTTTGCTATCGGTCACCCATGAATATTTAGCTTTGTAAGGTGGTCATTGCTGATTCACA 839
Query 590 CGAAATTTCA 599
||| ||| ||
Sbjct 840 CGAGATTCCA 849
>seq48145
Length=604
Score = 87.8 bits (96), Expect = 6e-15
Identities = 96/128 (75%), Gaps = 0/128 (0%)
Strand=Plus/Plus
Query 472 TTTCAGGTACTATTTCACTCCCCGCCAGGGGTACTTTTCACCTTTCCCTCACGGTACTTG 531
||||| || ||||||||||| ||| |||| ||||||||| || ||| |||||| ||
Sbjct 284 TTTCATGTTCTATTTCACTCTCCGATGAGGGTTCTTTTCACCATTTCCTTACGGTATTTC 343
Query 532 TCCGCTATCGGTCACCAAGGAGTATTTAGGCTTAACGGGTGGTCCCGCCAGATTCACACG 591
| | ||||| ||| |||||||||||||| ||| |||||| | |||||||| |
Sbjct 344 TTTGTTATCGATCATCAAGGAGTATTTAGTCTTGTAAAGTGGTCATTACTGATTCACATG 403
Query 592 AAATTTCA 599
| ||| ||
Sbjct 404 AGATTCCA 411
>seq710387
Length=1807
Score = 80.6 bits (88), Expect = 1e-12
Identities = 111/154 (72%), Gaps = 1/154 (1%)
Strand=Plus/Minus
Query 139 TGCACCTAAATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCACCC 198
||| ||| || ||||||| ||||||| ||||| | ||| || || | ||||||||
Sbjct 545 TGCGCCTCAACGCATTTCAAGGAGAACTAGCTAGCTTTGGGTTCGAGTGACATTTCACCC 486
Query 199 CTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGGTCT 258
|| ||||| |||||| || | |||||||| | | | | || || |||| || |
Sbjct 485 -TAACCACAACTCATCCACTGACTTTTCAACATCACTCGATTTGGGATACCACTTAGTTT 427
Query 259 TACCCGCGCTTCAACCTGCCCATGGATAGATCAC 292
|||| |||||| |||| ||||||||||||||
Sbjct 426 CACCCAAGCTTCATCCTGGTCATGGATAGATCAC 393
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1803856672000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |