Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Vitis_20aestivalis_20[genbank_20GCA_5F001562795.1_202016-02-17]
756,125 sequences; 432,755,284 total letters
Query= AAMG01001291.1
Length=420
Score E
Sequences producing significant alignments: (Bits) Value
seq307084 118 3e-24
seq98063 118 3e-24
seq205838 113 1e-22
seq408656 111 4e-22
seq583453 107 5e-21
seq86428 89.7 1e-15
>seq307084
Length=221
Score = 118 bits (130), Expect = 3e-24
Identities = 105/130 (81%), Gaps = 1/130 (1%)
Strand=Plus/Plus
Query 250 CTCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTTCT 309
||||||||||||| | || ||||||| | ||||||||||||| | | ||||||||
Sbjct 92 CTCCCACTGCTTGGGAACTTATGGTTTCATGTTCTATTTCACTCCTCGATG-GGGGTTCT 150
Query 310 TTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTGG 369
|||| || || ||||||| ||||| ||| |||||||||| ||| ||||||||||||||
Sbjct 151 TTTCACCCTTTCCTCACGATACTACTTCGCTATCGGTCACCCAGAAGTATTTAGCCTTGC 210
Query 370 AGGATGGTCC 379
| | ||||||
Sbjct 211 AAGGTGGTCC 220
>seq98063
Length=204
Score = 118 bits (130), Expect = 3e-24
Identities = 105/130 (81%), Gaps = 1/130 (1%)
Strand=Plus/Plus
Query 250 CTCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTTCT 309
||||||||||||| | |||||||||| | ||||||||||||| | | ||||||||
Sbjct 75 CTCCCACTGCTTGGGAACTTACGGTTTCATGTTCTATTTCACTCCTCGATG-GGGGTTCT 133
Query 310 TTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTGG 369
|||| || || ||||| | ||||| ||| |||||||||| ||| ||||||||||||||
Sbjct 134 TTTCACCCTTTCCTCATGATACTACTTCGCTATCGGTCACCCAGAAGTATTTAGCCTTGC 193
Query 370 AGGATGGTCC 379
| | ||||||
Sbjct 194 AAGGTGGTCC 203
>seq205838
Length=480
Score = 113 bits (124), Expect = 1e-22
Identities = 170/236 (72%), Gaps = 12/236 (5%)
Strand=Plus/Minus
Query 137 GCCCTAGTAAGACTCGCTTTTCGCTACGCCTCCCCTATTCGGTT----AAGCTTTGCCAC 192
||| || ||||||| ||||| |||| | ||| || | |||| || || |||||
Sbjct 468 GCCTTATGAAGACTCTCTTTT-GCTAAGACTC---TAGTGGGTTCCCTAACCTAAGCCAC 413
Query 193 TGAAAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACC-CAACAAAGTGGGCT 251
|| |||| ||| ||| |||| | ||| ||| || || | | ||| | ||
Sbjct 412 TGCCTATAAATCGTCGACTCATTCTTCAATAGGCACATGGTTAAAGCCTCAATTTC--CT 355
Query 252 CCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTTCTTT 311
||| ||||||| | |||||||||| | ||||||||||||||| | ||||||||||
Sbjct 354 TCCATTGCTTGTGAACTTACGGTTTCATGTTCTATTTCACTCCCCAATG-GGGGTTCTTT 296
Query 312 TCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTT 367
|| | ||| |||||||||||||||| |||||||||| | |||||||||||||
Sbjct 295 TCATCCTTCTCTCACGGTACTAGTTCGCTATCGGTCACCTAAGAGTATTTAGCCTT 240
>seq408656
Length=331
Score = 111 bits (122), Expect = 4e-22
Identities = 96/118 (81%), Gaps = 1/118 (1%)
Strand=Plus/Plus
Query 250 CTCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTTCT 309
|| ||| ||||||| | |||||||||| | ||||||||||||||| | | ||||||
Sbjct 125 CTTCCATTGCTTGTGAACTTACGGTTTCATGTTCTATTTCACTCCCCAAT-GGAGGTTCT 183
Query 310 TTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTT 367
|||| || ||||||||| |||||||||| |||||||||| || ||| |||||||||
Sbjct 184 TTTCACCATTCCCTCACTGTACTAGTTCGCTATCGGTCACCTAGGAGTGTTTAGCCTT 241
>seq583453
Length=287
Score = 107 bits (118), Expect = 5e-21
Identities = 91/111 (82%), Gaps = 1/111 (1%)
Strand=Plus/Minus
Query 269 TACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTTCTTTTCGCCTTTCCCTCACGG 328
||| |||||| | ||||||||||||||| | |||||||||||| | ||||||||| |
Sbjct 278 TACAGTTTCATGTTCTATTTCACTCCCCGATG-GGGGTTCTTTTCATCATTCCCTCACAG 220
Query 329 TACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTGGAGGATGGTCC 379
|| || ||| |||||||||| ||| |||||||||||||| | | ||||||
Sbjct 219 TATTACTTCGCTATCGGTCACCCAGGAGTATTTAGCCTTGTAAGGTGGTCC 169
>seq86428
Length=1267
Score = 89.7 bits (98), Expect = 1e-15
Identities = 123/171 (72%), Gaps = 1/171 (1%)
Strand=Plus/Plus
Query 250 CTCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTTCT 309
|||| ||| |||| | |||||||||| | ||||||||| || | | ||||||
Sbjct 698 CTCCTACTACTTGGGAACTTACGGTTTCATATTTTATTTCACTTCCTGATG-GAGGTTCT 756
Query 310 TTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTGG 369
|||| || |||||||||||||||| || |||||||||| || | |||||||| |||
Sbjct 757 TTTCACCCTTCCCTCACGGTACTACTTTGCTATCGGTCACCCATGAATATTTAGCTTTGT 816
Query 370 AGGATGGTCCCCCCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACTCG 420
| | ||||| | ||||| || | || | ||||| | | |||||||
Sbjct 817 AAGGTGGTCATTGCTGATTCACACGAGATTCCACGTGCCTCATGCTACTCG 867
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1232211952000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |