Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vitis_20aestivalis_20[genbank_20GCA_5F001562795.1_202016-02-17] 756,125 sequences; 432,755,284 total letters Query= AAMG01001291.1 Length=420 Score E Sequences producing significant alignments: (Bits) Value seq307084 118 3e-24 seq98063 118 3e-24 seq205838 113 1e-22 seq408656 111 4e-22 seq583453 107 5e-21 seq86428 89.7 1e-15 >seq307084 Length=221 Score = 118 bits (130), Expect = 3e-24 Identities = 105/130 (81%), Gaps = 1/130 (1%) Strand=Plus/Plus Query 250 CTCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTTCT 309 ||||||||||||| | || ||||||| | ||||||||||||| | | |||||||| Sbjct 92 CTCCCACTGCTTGGGAACTTATGGTTTCATGTTCTATTTCACTCCTCGATG-GGGGTTCT 150 Query 310 TTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTGG 369 |||| || || ||||||| ||||| ||| |||||||||| ||| |||||||||||||| Sbjct 151 TTTCACCCTTTCCTCACGATACTACTTCGCTATCGGTCACCCAGAAGTATTTAGCCTTGC 210 Query 370 AGGATGGTCC 379 | | |||||| Sbjct 211 AAGGTGGTCC 220 >seq98063 Length=204 Score = 118 bits (130), Expect = 3e-24 Identities = 105/130 (81%), Gaps = 1/130 (1%) Strand=Plus/Plus Query 250 CTCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTTCT 309 ||||||||||||| | |||||||||| | ||||||||||||| | | |||||||| Sbjct 75 CTCCCACTGCTTGGGAACTTACGGTTTCATGTTCTATTTCACTCCTCGATG-GGGGTTCT 133 Query 310 TTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTGG 369 |||| || || ||||| | ||||| ||| |||||||||| ||| |||||||||||||| Sbjct 134 TTTCACCCTTTCCTCATGATACTACTTCGCTATCGGTCACCCAGAAGTATTTAGCCTTGC 193 Query 370 AGGATGGTCC 379 | | |||||| Sbjct 194 AAGGTGGTCC 203 >seq205838 Length=480 Score = 113 bits (124), Expect = 1e-22 Identities = 170/236 (72%), Gaps = 12/236 (5%) Strand=Plus/Minus Query 137 GCCCTAGTAAGACTCGCTTTTCGCTACGCCTCCCCTATTCGGTT----AAGCTTTGCCAC 192 ||| || ||||||| ||||| |||| | ||| || | |||| || || ||||| Sbjct 468 GCCTTATGAAGACTCTCTTTT-GCTAAGACTC---TAGTGGGTTCCCTAACCTAAGCCAC 413 Query 193 TGAAAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACC-CAACAAAGTGGGCT 251 || |||| ||| ||| |||| | ||| ||| || || | | ||| | || Sbjct 412 TGCCTATAAATCGTCGACTCATTCTTCAATAGGCACATGGTTAAAGCCTCAATTTC--CT 355 Query 252 CCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTTCTTT 311 ||| ||||||| | |||||||||| | ||||||||||||||| | |||||||||| Sbjct 354 TCCATTGCTTGTGAACTTACGGTTTCATGTTCTATTTCACTCCCCAATG-GGGGTTCTTT 296 Query 312 TCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTT 367 || | ||| |||||||||||||||| |||||||||| | ||||||||||||| Sbjct 295 TCATCCTTCTCTCACGGTACTAGTTCGCTATCGGTCACCTAAGAGTATTTAGCCTT 240 >seq408656 Length=331 Score = 111 bits (122), Expect = 4e-22 Identities = 96/118 (81%), Gaps = 1/118 (1%) Strand=Plus/Plus Query 250 CTCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTTCT 309 || ||| ||||||| | |||||||||| | ||||||||||||||| | | |||||| Sbjct 125 CTTCCATTGCTTGTGAACTTACGGTTTCATGTTCTATTTCACTCCCCAAT-GGAGGTTCT 183 Query 310 TTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTT 367 |||| || ||||||||| |||||||||| |||||||||| || ||| ||||||||| Sbjct 184 TTTCACCATTCCCTCACTGTACTAGTTCGCTATCGGTCACCTAGGAGTGTTTAGCCTT 241 >seq583453 Length=287 Score = 107 bits (118), Expect = 5e-21 Identities = 91/111 (82%), Gaps = 1/111 (1%) Strand=Plus/Minus Query 269 TACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTTCTTTTCGCCTTTCCCTCACGG 328 ||| |||||| | ||||||||||||||| | |||||||||||| | ||||||||| | Sbjct 278 TACAGTTTCATGTTCTATTTCACTCCCCGATG-GGGGTTCTTTTCATCATTCCCTCACAG 220 Query 329 TACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTGGAGGATGGTCC 379 || || ||| |||||||||| ||| |||||||||||||| | | |||||| Sbjct 219 TATTACTTCGCTATCGGTCACCCAGGAGTATTTAGCCTTGTAAGGTGGTCC 169 >seq86428 Length=1267 Score = 89.7 bits (98), Expect = 1e-15 Identities = 123/171 (72%), Gaps = 1/171 (1%) Strand=Plus/Plus Query 250 CTCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTTCT 309 |||| ||| |||| | |||||||||| | ||||||||| || | | |||||| Sbjct 698 CTCCTACTACTTGGGAACTTACGGTTTCATATTTTATTTCACTTCCTGATG-GAGGTTCT 756 Query 310 TTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTGG 369 |||| || |||||||||||||||| || |||||||||| || | |||||||| ||| Sbjct 757 TTTCACCCTTCCCTCACGGTACTACTTTGCTATCGGTCACCCATGAATATTTAGCTTTGT 816 Query 370 AGGATGGTCCCCCCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACTCG 420 | | ||||| | ||||| || | || | ||||| | | ||||||| Sbjct 817 AAGGTGGTCATTGCTGATTCACACGAGATTCCACGTGCCTCATGCTACTCG 867 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1232211952000