Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Vitis_20aestivalis_20[genbank_20GCA_5F001562795.1_202016-02-17]
756,125 sequences; 432,755,284 total letters
Query= AAMG01001752.1
Length=400
Score E
Sequences producing significant alignments: (Bits) Value
seq135086 131 4e-28
seq205801 111 4e-22
seq169463 73.4 9e-11
>seq135086
Length=399
Score = 131 bits (144), Expect = 4e-28
Identities = 114/142 (80%), Gaps = 0/142 (0%)
Strand=Plus/Plus
Query 259 CTTGACCAGTGAGCTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTG 318
|| || |||||||||||||||||||||||||||| ||| |||||| | | |||||| ||
Sbjct 1 CTCGATCAGTGAGCTATTACGCACTCTTTCAAGGGTGGATGCTTCTAGGTAAACCTCTTG 60
Query 319 GTTGTCTACGCAACTCCACATCCTTTCCCACTGAGTCACCACTTAGGGGCCTTAGCTGAT 378
|||||||| ||| | | || |||||| ||||||| || |||| |||||||| || |
Sbjct 61 GTTGTCTATGCACCCCTACCTCCTTTATCACTGAGCGGTCATTTAGAGGCCTTAGTTGGT 120
Query 379 GATCTGGGCTGTTTCCCTCTCG 400
||| ||| ||||||| |||||
Sbjct 121 GATTCGGGTTGTTTCCTTCTCG 142
>seq205801
Length=667
Score = 111 bits (122), Expect = 4e-22
Identities = 109/138 (79%), Gaps = 2/138 (1%)
Strand=Plus/Plus
Query 207 CCACAGCTTCGGCGGATAACTTAAGCCCCGCTACATTATCGGCGCGGAATCACTTGACCA 266
||||||||||| | ||| |||| |||||| | ||| ||||||| | |||| || ||
Sbjct 265 CCACAGCTTCGACAGATCGCTTA-GCCCCGTT-CATCTTCGGCGCAAGAACACTAGATCA 322
Query 267 GTGAGCTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTA 326
||||||||||| ||||||||||||||||| |||||| | || |||||||| | |||||
Sbjct 323 ATGAGCTATTACACACTCTTTCAAGGATGGTTGCTTCTAGGCAAACCTCCTTGCTGTCTC 382
Query 327 CGCAACTCCACATCCTTT 344
||| | | || ||||||
Sbjct 383 TGCACCCCTACCTCCTTT 400
>seq169463
Length=446
Score = 73.4 bits (80), Expect = 9e-11
Identities = 76/97 (78%), Gaps = 2/97 (2%)
Strand=Plus/Minus
Query 207 CCACAGCTTCGGCGGATAACTTAAGCCCCGCTACATTATCGGCGCGGAATCACTTGACCA 266
||||||||| ||| || |||| ||| || | ||| |||| | | |||| || ||
Sbjct 104 CCACAGCTTTGGCAAATTGCTTA-GCCTCG-TCCATCTTCGGTGTAAGAGCACTCGATCA 47
Query 267 GTGAGCTATTACGCACTCTTTCAAGGATGGCTGCTTC 303
|||||||||||||||||||||||||| ||| ||||||
Sbjct 46 GTGAGCTATTACGCACTCTTTCAAGGGTGGATGCTTC 10
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1168695872000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |