Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vitis_20aestivalis_20[genbank_20GCA_5F001562795.1_202016-02-17] 756,125 sequences; 432,755,284 total letters Query= AAMG01001821.1 Length=161 Score E Sequences producing significant alignments: (Bits) Value seq622790 123 2e-26 seq85462 95.1 1e-17 seq307335 89.7 4e-16 seq340387 80.6 2e-13 seq136346 73.4 3e-11 >seq622790 Length=790 Score = 123 bits (136), Expect = 2e-26 Identities = 124/160 (78%), Gaps = 1/160 (1%) Strand=Plus/Plus Query 2 CGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGG 61 ||||||||||| |||||||| ||| | | ||||| || ||| ||||| ||| | | Sbjct 620 CGAGTTGCAGAGAACAATCCGAACTGAGGCAATCTTTCCGG-ATTCGCTCCGCCTTACAG 678 Query 62 GTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCAT 121 | || ||| |||| | |||||||| ||||||| |||| |||||||||||||| Sbjct 679 CCTTGCTTCCCATTGTAATTGCCATTGTAGCACGTGTGTGGCCCAGCCCATAAGGGCCAT 738 Query 122 GAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161 | |||||||||||||||||||||||||||| || | |||| Sbjct 739 GCGGACTTGACGTCATCCCCACCTTCCTCCAGTATATCAC 778 >seq85462 Length=634 Score = 95.1 bits (104), Expect = 1e-17 Identities = 96/124 (77%), Gaps = 2/124 (2%) Strand=Plus/Minus Query 36 TTTCTGGGATTAGCTCCCCCTCGCGGGTTGGCGGCCCTCTGTATGTACCATTGTATGACG 95 ||| ||| ||| ||| |||||||||| | ||| |||| ||| | |||||||| ||| Sbjct 633 TTTTTGGAGTTAACTCACCCTCGCGGGATCGCGACCCTTTGTCTCGGCCATTGTAGCACG 574 Query 96 TGTGAAGCCCTACCCATAAGGGCCATGAGGACTTGACGTCATCCCCACCTTCCTCCGGTT 155 ||| |||| | |||||||| ||||| ||||||| ||||| | ||||||||||||| | Sbjct 573 TGTC--GCCCAAGGCATAAGGGGCATGATGACTTGATGTCATTCTCACCTTCCTCCGGCT 516 Query 156 TGTC 159 | || Sbjct 515 TATC 512 >seq307335 Length=1234 Score = 89.7 bits (98), Expect = 4e-16 Identities = 94/124 (76%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 36 TTTCTGGGATTAGCTCCCCCTCGCGGGTTGGCGGCCCTCTGTATGTACCATTGTATGACG 95 ||| ||| ||| ||| | |||||| | | ||| |||| ||| | |||||||| ||| Sbjct 631 TTTTTGGAGTTAACTCACTCTCGCGAGATCGCGACCCTTTGTCTCAGCCATTGTAGCACG 572 Query 96 TGTGAAGCCCTACCCATAAGGGCCATGAGGACTTGACGTCATCCCCACCTTCCTCCGGTT 155 ||| |||| |||||||| ||||| ||||||||||||||| ||||||| ||||| | Sbjct 571 TGTATCGCCCATAGCATAAGGGGCATGATGACTTGACGTCATCCTCACCTTCTTCCGGCT 512 Query 156 TGTC 159 | || Sbjct 511 TATC 508 >seq340387 Length=276 Score = 80.6 bits (88), Expect = 2e-13 Identities = 111/153 (73%), Gaps = 2/153 (1%) Strand=Plus/Plus Query 4 AGTTGCAGACTACAATCCGGACTACG-ATACACTTTCTGGGATTAGCTCCCCCTCGCGGG 62 ||||||| ||| ||| | |||| | ||| ||| ||| ||||||| ||||||| || Sbjct 125 AGTTGCAACCTATAATTTGAACTAAGGATAGGTTTT-TGGAGTTAGCTCACCCTCGCAGG 183 Query 63 TTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCATG 122 | | || | ||| ||||||||| || |||| || | |||||| | |||| Sbjct 184 ATCGAAACCTTTTGTCCCGACCATTGTAACACATGTGTCGCGTAAGGCATAAGAGGCATG 243 Query 123 AGGACTTGACGTCATCCCCACCTTCCTCCGGTT 155 | ||||||||||||||| ||||||||| ||||| Sbjct 244 ATGACTTGACGTCATCCTCACCTTCCTTCGGTT 276 >seq136346 Length=402 Score = 73.4 bits (80), Expect = 3e-11 Identities = 88/120 (73%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 36 TTTCTGGGATTAGCTCCCCCTCGCGGGTTGGCGGCCCTCTGTATGTACCATTGTATGACG 95 ||| ||| ||||||| ||||||| || | | | | ||| ||||||||| || Sbjct 120 TTTTTGGAGTTAGCTCACCCTCGCAGGATCGAAACTTTTTGTCCCGACCATTGTAACACA 61 Query 96 TGTGAAGCCCTACCCATAAGGGCCATGAGGACTTGACGTCATCCCCACCTTCCTCCGGTT 155 |||| || | |||||| | ||||| ||||||||||||||| ||||||||| ||||| Sbjct 60 TGTGTTGCGTAAGGCATAAGAGGCATGATGACTTGACGTCATCCTCACCTTCCTTCGGTT 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412952816250