Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Vitis_20aestivalis_20[genbank_20GCA_5F001562795.1_202016-02-17]
756,125 sequences; 432,755,284 total letters
Query= AAMG01002194.1
Length=319
Score E
Sequences producing significant alignments: (Bits) Value
seq120060 96.9 6e-18
seq413186 86.0 1e-14
seq99726 84.2 4e-14
seq741487 82.4 1e-13
seq193751 80.6 5e-13
>seq120060
Length=341
Score = 96.9 bits (106), Expect = 6e-18
Identities = 172/245 (70%), Gaps = 12/245 (5%)
Strand=Plus/Plus
Query 8 ATGGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATAAGCTGCG 67
||||||||| ||| || | | || | | ||||| ||||||| | | | ||| ||
Sbjct 59 ATGGTGGATACCTAAGCACTCAGAGACAAGGAAGGGCGTAGTAAGCAACTAAATGCTTCG 118
Query 68 GGGAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGCCCTTTGG 127
||||| | ||| | | | |||| | ||||| |||||| || |||| ||| |
Sbjct 119 AGGAGTTAA-AAATAAGCATAGATCGG-AGATTCCCGAATAGGTTAACC------TTTCG 170
Query 128 GTCATTGCATGCTGAATACATAGGTATGCAA-AGCGAACGCGGCGAACTGAAACATCTAA 186
| ||| |||||||| ||| || | |||| || || || |||||||||||||| |
Sbjct 171 AAC--TGC-TGCTGAATCCATGGGCAGGCAAGAGACAATCTGGTGAACTGAAACATCTTA 227
Query 187 GTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGATG 246
|||| | ||||||||| ||| | |||||||| |||| ||||||||||||||||
Sbjct 228 ATAGCCAGATGAAAAGAAAGCAAAAGTGATTCCCATAGTAACGGCGAGCGAAATGGGAGT 287
Query 247 AGCCT 251
|||||
Sbjct 288 AGCCT 292
>seq413186
Length=322
Score = 86.0 bits (94), Expect = 1e-14
Identities = 65/77 (84%), Gaps = 0/77 (0%)
Strand=Plus/Minus
Query 168 GGCGAACTGAAACATCTAAGTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAG 227
|||||||| |||||||| |||||| ||||||||||| ||| | |||||||| |||||
Sbjct 321 GGCGAACTAAAACATCTTAGTAGCCAAAGGAAAAGAAAGCAAAAGCGATTCCCATAGTAG 262
Query 228 TGGCGAGCGAAATGGGA 244
|| |||||||||||||
Sbjct 261 TGATGAGCGAAATGGGA 245
>seq99726
Length=304
Score = 84.2 bits (92), Expect = 4e-14
Identities = 69/83 (83%), Gaps = 1/83 (1%)
Strand=Plus/Plus
Query 169 GCGAACTGAAACATCTAAGTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGT 228
|||||||||||||||| |||||| ||||||||||| | | | |||||||| |||||
Sbjct 16 GCGAACTGAAACATCTTAGTAGCCAGAGGAAAAGAAAGCCAAAGCGATTCCCATAGTAGC 75
Query 229 GGCGAGCGAAATGGGATGAGCCT 251
|| ||||||||||||| |||||
Sbjct 76 GG-GAGCGAAATGGGAACAGCCT 97
>seq741487
Length=497
Score = 82.4 bits (90), Expect = 1e-13
Identities = 167/242 (69%), Gaps = 12/242 (5%)
Strand=Plus/Minus
Query 11 GTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATAAGCTGCGGGG 70
|||||| ||| ||| | || ||| |||| | ||||| ||| | ||| ||| |
Sbjct 423 GTGGATACCTAGGCACCCAGAGACGAGGAAGAGCCTAGTAAGCGACGAAATGCTTCGGAG 364
Query 71 AGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGCCCTTTGGGTC 130
||| | ||| | | | |||||| || || |||||| || |||| ||| | |
Sbjct 363 AGTT-GAAAATAAGCATAGATCCGGAGGTTCCCGAATAGGTCAACC------TTTCGAAC 311
Query 131 ATTGCATGCTGAATACATAGGTATGCAA-AGCGAACGCGGCGAACTGAAACATCTAAGTA 189
||| | |||||| ||| || | |||| || ||| ||| || |||||||||| ||||
Sbjct 310 --TGC-TCCTGAATCCATGGGCAGGCAAGAGACAACCTGGCAAATTGAAACATCTTAGTA 254
Query 190 GCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGATGAGC 249
|| ||||||||||| | | | ||||||| ||||| | ||||||||||||| |||
Sbjct 253 GCCAGAGGAAAAGAAAGCCAAAGCGATTCCCGTAGTAGCCG-GAGCGAAATGGGAACAGC 195
Query 250 CT 251
||
Sbjct 194 CT 193
>seq193751
Length=227
Score = 80.6 bits (88), Expect = 5e-13
Identities = 64/77 (83%), Gaps = 0/77 (0%)
Strand=Plus/Minus
Query 168 GGCGAACTGAAACATCTAAGTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAG 227
|||||||| |||||||| |||||| ||||||||||| ||| | ||||||| |||||
Sbjct 226 GGCGAACTAAAACATCTTAGTAGCCAAAGGAAAAGAAAGCAAAAGCGATTCCCGTAGTAG 167
Query 228 TGGCGAGCGAAATGGGA 244
|| |||||||||||||
Sbjct 166 TGATGAGCGAAATGGGA 150
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 911455748000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |