Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vitis_20aestivalis_20[genbank_20GCA_5F001562795.1_202016-02-17] 756,125 sequences; 432,755,284 total letters Query= AAMG01002194.1 Length=319 Score E Sequences producing significant alignments: (Bits) Value seq120060 96.9 6e-18 seq413186 86.0 1e-14 seq99726 84.2 4e-14 seq741487 82.4 1e-13 seq193751 80.6 5e-13 >seq120060 Length=341 Score = 96.9 bits (106), Expect = 6e-18 Identities = 172/245 (70%), Gaps = 12/245 (5%) Strand=Plus/Plus Query 8 ATGGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATAAGCTGCG 67 ||||||||| ||| || | | || | | ||||| ||||||| | | | ||| || Sbjct 59 ATGGTGGATACCTAAGCACTCAGAGACAAGGAAGGGCGTAGTAAGCAACTAAATGCTTCG 118 Query 68 GGGAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGCCCTTTGG 127 ||||| | ||| | | | |||| | ||||| |||||| || |||| ||| | Sbjct 119 AGGAGTTAA-AAATAAGCATAGATCGG-AGATTCCCGAATAGGTTAACC------TTTCG 170 Query 128 GTCATTGCATGCTGAATACATAGGTATGCAA-AGCGAACGCGGCGAACTGAAACATCTAA 186 | ||| |||||||| ||| || | |||| || || || |||||||||||||| | Sbjct 171 AAC--TGC-TGCTGAATCCATGGGCAGGCAAGAGACAATCTGGTGAACTGAAACATCTTA 227 Query 187 GTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGATG 246 |||| | ||||||||| ||| | |||||||| |||| |||||||||||||||| Sbjct 228 ATAGCCAGATGAAAAGAAAGCAAAAGTGATTCCCATAGTAACGGCGAGCGAAATGGGAGT 287 Query 247 AGCCT 251 ||||| Sbjct 288 AGCCT 292 >seq413186 Length=322 Score = 86.0 bits (94), Expect = 1e-14 Identities = 65/77 (84%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 168 GGCGAACTGAAACATCTAAGTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAG 227 |||||||| |||||||| |||||| ||||||||||| ||| | |||||||| ||||| Sbjct 321 GGCGAACTAAAACATCTTAGTAGCCAAAGGAAAAGAAAGCAAAAGCGATTCCCATAGTAG 262 Query 228 TGGCGAGCGAAATGGGA 244 || ||||||||||||| Sbjct 261 TGATGAGCGAAATGGGA 245 >seq99726 Length=304 Score = 84.2 bits (92), Expect = 4e-14 Identities = 69/83 (83%), Gaps = 1/83 (1%) Strand=Plus/Plus Query 169 GCGAACTGAAACATCTAAGTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGT 228 |||||||||||||||| |||||| ||||||||||| | | | |||||||| ||||| Sbjct 16 GCGAACTGAAACATCTTAGTAGCCAGAGGAAAAGAAAGCCAAAGCGATTCCCATAGTAGC 75 Query 229 GGCGAGCGAAATGGGATGAGCCT 251 || ||||||||||||| ||||| Sbjct 76 GG-GAGCGAAATGGGAACAGCCT 97 >seq741487 Length=497 Score = 82.4 bits (90), Expect = 1e-13 Identities = 167/242 (69%), Gaps = 12/242 (5%) Strand=Plus/Minus Query 11 GTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATAAGCTGCGGGG 70 |||||| ||| ||| | || ||| |||| | ||||| ||| | ||| ||| | Sbjct 423 GTGGATACCTAGGCACCCAGAGACGAGGAAGAGCCTAGTAAGCGACGAAATGCTTCGGAG 364 Query 71 AGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGCCCTTTGGGTC 130 ||| | ||| | | | |||||| || || |||||| || |||| ||| | | Sbjct 363 AGTT-GAAAATAAGCATAGATCCGGAGGTTCCCGAATAGGTCAACC------TTTCGAAC 311 Query 131 ATTGCATGCTGAATACATAGGTATGCAA-AGCGAACGCGGCGAACTGAAACATCTAAGTA 189 ||| | |||||| ||| || | |||| || ||| ||| || |||||||||| |||| Sbjct 310 --TGC-TCCTGAATCCATGGGCAGGCAAGAGACAACCTGGCAAATTGAAACATCTTAGTA 254 Query 190 GCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGATGAGC 249 || ||||||||||| | | | ||||||| ||||| | ||||||||||||| ||| Sbjct 253 GCCAGAGGAAAAGAAAGCCAAAGCGATTCCCGTAGTAGCCG-GAGCGAAATGGGAACAGC 195 Query 250 CT 251 || Sbjct 194 CT 193 >seq193751 Length=227 Score = 80.6 bits (88), Expect = 5e-13 Identities = 64/77 (83%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 168 GGCGAACTGAAACATCTAAGTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAG 227 |||||||| |||||||| |||||| ||||||||||| ||| | ||||||| ||||| Sbjct 226 GGCGAACTAAAACATCTTAGTAGCCAAAGGAAAAGAAAGCAAAAGCGATTCCCGTAGTAG 167 Query 228 TGGCGAGCGAAATGGGA 244 || ||||||||||||| Sbjct 166 TGATGAGCGAAATGGGA 150 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 911455748000