Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vitis_20aestivalis_20[genbank_20GCA_5F001562795.1_202016-02-17] 756,125 sequences; 432,755,284 total letters Query= AAMG01002207.1 Length=564 Score E Sequences producing significant alignments: (Bits) Value seq112193 131 6e-28 seq112960 125 2e-26 seq484086 114 4e-23 seq408024 102 3e-19 seq61041 102 3e-19 seq456410 98.7 3e-18 seq259396 95.1 4e-17 seq234791 86.0 2e-14 >seq112193 Length=946 Score = 131 bits (144), Expect = 6e-28 Identities = 331/489 (68%), Gaps = 16/489 (3%) Strand=Plus/Minus Query 1 TCGACTTGTAAGTCTCGCAGTCAAGCTCCCTTGTGCACTTACACTC-ACCACCTGATTGC 59 ||||| ||| |||| | |||||||||||||| ||| || ||||| | ||| || | Sbjct 729 TCGACAGGTAGGTCTTGTAGTCAAGCTCCCTTCTGCCTTTGCACTCGAGGACCA-ATCTC 671 Query 60 CAACCAGGCT-GAGGGAACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACCGCCCC 118 | || |||| |||| |||||||| | |||||||||| |||||||||| | | ||||| Sbjct 670 CGTCC-GGCTAGAGGAAACCTTTGCACACCTCCGTTACCTTTTGGGAGGCCTAT-GCCCC 613 Query 119 AGTTAAACTACCCACCAGGCACTGTCCCCAACCC---AGATCATGGGCCAAGGTTAGATA 175 | ||||| | ||| | |||||||| || || || | |||||||| | Sbjct 612 ATAGAAACTGTCTACCTGAGACTGTCCCTTGGCCTATAGGTCCTAACACAAGGTTATAAT 553 Query 176 TCCACTACGGTCAGAGTGGTATTTCAACAACGACTCCACAACCACTAGCGT-GGCCGCAT 234 || | | |||||| ||| ||| | | ||| | || | | || || | Sbjct 552 TCTAACTCTTCCAGAGTAGTAACTCATTGATGGCTCGTCCCCCCCCCCGGAAGGAGGCCT 493 Query 235 CATAGTCTCCCACCTATCCTACACA--AACCGCACCGAATGCCAATACCAAGCTATAGTG 292 | | | ||||||| | | || || || | || |||||| | | | ||| || Sbjct 492 TCTTGCCCTCCACCTAAGTTGCGCAGGAAAGGCCC--AAAGCCAATCCTAGGGAATAATG 435 Query 293 AAGGTCCCG-GGGTCTTTTCGTCCTGCCGCGCGAAACGAGCATCTTTACTCGTACTGCAA 351 ||| | | |||||||| |||| | || | | ||||||| || | | | Sbjct 434 AAGCTTCATAGGGTCTTTCTGTCCAGGTGCAGGTAGTCCGCATCTTCACAAACATGACTA 375 Query 352 TTTCACCGGGCCTGTGGTTGAGACAGCAGGGGAG-TCGTTACGCCATTCGTGCAGGTCGG 410 |||||||| |||| | | |||||| | || |||||||||| ||||||| |||||| Sbjct 374 TTTCACCGAGCCTCTCTCTAAGACAGT-GCCTAGATCGTTACGCCTTTCGTGCTGGTCGG 316 Query 411 AACTTACCCGACAAGGAATTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTAC 470 |||||||| ||||||||||||||||||||||||| |||| ||||| | | || || || Sbjct 315 AACTTACCTGACAAGGAATTTCGCTACCTTAGGACCATTATGGTTACGATCCCCATTCAC 256 Query 471 TGGGGCTTC 479 ||||||||| Sbjct 255 TGGGGCTTC 247 >seq112960 Length=947 Score = 125 bits (138), Expect = 2e-26 Identities = 84/94 (89%), Gaps = 0/94 (0%) Strand=Plus/Plus Query 386 TCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGAT 445 |||||||||| |||||||| ||||||||||||| |||||||||||||||||||||||||| Sbjct 730 TCGTTACGCCTTTCGTGCAAGTCGGAACTTACCTGACAAGGAATTTCGCTACCTTAGGAT 789 Query 446 GGTTATAGTTACCACCGCCGTTTACTGGGGCTTC 479 |||||||||| | |||||| ||| ||||||| Sbjct 790 CGTTATAGTTATGGCTGCCGTTCACTAGGGCTTC 823 >seq484086 Length=716 Score = 114 bits (126), Expect = 4e-23 Identities = 80/91 (88%), Gaps = 0/91 (0%) Strand=Plus/Minus Query 388 GTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGATGG 447 |||||||| ||||||| ||| |||||||||| ||||||||||| ||||||||||||| | Sbjct 614 GTTACGCCTTTCGTGCGGGTTGGAACTTACCTAACAAGGAATTTTGCTACCTTAGGATCG 555 Query 448 TTATAGTTACCACCGCCGTTTACTGGGGCTT 478 ||||||||| |||||| || |||||||||| Sbjct 554 TTATAGTTATGACCGCCTTTCACTGGGGCTT 524 >seq408024 Length=832 Score = 102 bits (112), Expect = 3e-19 Identities = 67/74 (91%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 405 GGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGATGGTTATAGTTACCACCGCC 464 ||||||||||||||||||||| |||||||||||||||||| ||||||||||| |||||| Sbjct 832 GGTCGGAACTTACCCGACAAGTAATTTCGCTACCTTAGGACCGTTATAGTTACGACCGCC 773 Query 465 GTTTACTGGGGCTT 478 ||| | ||||||| Sbjct 772 GTTCATCGGGGCTT 759 >seq61041 Length=809 Score = 102 bits (112), Expect = 3e-19 Identities = 91/114 (80%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 351 ATTTCACCGGGCCTGTGGTTGAGACAGCAGGGGAGTCGTTACGCCATTCGTGCAGGTCGG 410 ||||||||| |||| | ||||| || || |||| ||| ||||||| |||| | Sbjct 189 ATTTCACCGAGCCTTTCTCTGAGATAGTGCTTAGGTTGTTATGCCTTTCGTGCGGGTCAG 130 Query 411 AACTTACCCGACAAGGAATTTCGCTACCTTAGGATGGTTATAGTTACCACCGCC 464 ||||||||||||||||||||| ||||| ||||||| ||||||||||| | |||| Sbjct 129 AACTTACCCGACAAGGAATTTTGCTACTTTAGGATCGTTATAGTTACGATCGCC 76 >seq456410 Length=694 Score = 98.7 bits (108), Expect = 3e-18 Identities = 88/108 (81%), Gaps = 2/108 (2%) Strand=Plus/Plus Query 351 ATTTCACCGGGCCTGTGGTTGAGACAGCAGGGGAG-TCGTTACGCCATTCGTGCAGGTCG 409 ||||||||| |||| | |||||||| | || |||||| ||| || |||| |||| Sbjct 506 ATTTCACCGAGCCTTTCTCTGAGACAGT-GCTCAGATCGTTATGCCTTTTGTGCGGGTCA 564 Query 410 GAACTTACCCGACAAGGAATTTCGCTACCTTAGGATGGTTATAGTTAC 457 |||||||||||||||||||||| ||||| |||||| ||||||||||| Sbjct 565 GAACTTACCCGACAAGGAATTTTGCTACTTTAGGACCGTTATAGTTAC 612 >seq259396 Length=598 Score = 95.1 bits (104), Expect = 4e-17 Identities = 76/92 (83%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 388 GTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGATGG 447 |||||||| || |||| ||| |||| |||| |||||||||||| || |||||||||| | Sbjct 103 GTTACGCCTTTTGTGCGGGTTGGAATTTACTTGACAAGGAATTTTGCAACCTTAGGATCG 162 Query 448 TTATAGTTACCACCGCCGTTTACTGGGGCTTC 479 ||||||||| | ||||||| || ||||||| Sbjct 163 TTATAGTTATGATCGCCGTTCACCAGGGCTTC 194 >seq234791 Length=834 Score = 86.0 bits (94), Expect = 2e-14 Identities = 74/92 (80%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 388 GTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGATGG 447 ||| || | |||||| ||| | ||||| | |||||||||||| ||||||||||||| | Sbjct 339 GTTCCGTCTTTCGTGTGGGTTGAAACTTGCTTGACAAGGAATTTTGCTACCTTAGGATTG 398 Query 448 TTATAGTTACCACCGCCGTTTACTGGGGCTTC 479 ||||||||| || | |||| || |||||||| Sbjct 399 TTATAGTTATGACTGTCGTTCACCGGGGCTTC 430 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1689527728000