Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vitis_20aestivalis_20[genbank_20GCA_5F001562795.1_202016-02-17] 756,125 sequences; 432,755,284 total letters Query= AAMG01002223.1 Length=366 Score E Sequences producing significant alignments: (Bits) Value seq880 86.0 1e-14 seq553357 77.0 7e-12 seq511650 75.2 2e-11 seq595140 73.4 8e-11 >seq880 Length=1136 Score = 86.0 bits (94), Expect = 1e-14 Identities = 124/175 (71%), Gaps = 0/175 (0%) Strand=Plus/Minus Query 105 CCTTCATCCTTCACGCTACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCA 164 ||||| || ||||| || | ||| ||| || ||| |||||| || ||||| || Sbjct 423 CCTTCTATCTCCACGCGACATTGCTCCATCAAGCTTTCGCCCATTGCGAAAAATTCCCCA 364 Query 165 CTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCT 224 |||| |||||||||||||||||| |||||||||| | | ||||| || | |||||| Sbjct 363 TTGCTATCTCCCGTAGGAGTTTGGATTGTGTCTCAGTCCTAGTGTGGTTGATCATCCTCT 304 Query 225 CAGAACCCCTATCCATCGTAGGCTAGGTGGGCCGTTACCCCGCCTACTACCTAAT 279 |||| | ||| ||||| | | ||| | || || | || |||| ||||| Sbjct 303 CAGACCAGCTACTGATCGTCGTATTGGTAAGATATTGCCTCACCAACTAGCTAAT 249 >seq553357 Length=280 Score = 77.0 bits (84), Expect = 7e-12 Identities = 75/97 (77%), Gaps = 0/97 (0%) Strand=Plus/Minus Query 115 TCACGCTACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTC 174 |||||| | | ||||| || | || ||| |||||| |||| ||||| ||| ||||| | Sbjct 277 TCACGCGATATTGCTGGATCGGGCTTTCGCCCATTGTCCAAGATTCCCCACGACTGCCCC 218 Query 175 CCGTAGGAGTTTGGACCGTGTCTCAGTTCCAATGTGG 211 |||| ||||| || ||||||||||| ||| ||||| Sbjct 217 CCGTGGGAGTCCGGGACGTGTCTCAGTCCCAGTGTGG 181 >seq511650 Length=600 Score = 75.2 bits (82), Expect = 2e-11 Identities = 86/116 (74%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 113 CTTCACGCTACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCC 172 || ||||| || | ||| |||| | ||| |||||| || | ||| || |||| | Sbjct 181 CTCCACGCGACATTGCTCCATCAGGATTTCGCCCATTGTGAAAAACTCCCCATTGCTATC 240 Query 173 TCCCGTAGGAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGA 228 ||||||||||||||||| |||||||||| | | ||||| || | || ||||||| Sbjct 241 TCCCGTAGGAGTTTGGATTGTGTCTCAGTACTAGTGTGGTTGATCATCTTCTCAGA 296 >seq595140 Length=218 Score = 73.4 bits (80), Expect = 8e-11 Identities = 62/74 (84%), Gaps = 2/74 (3%) Strand=Plus/Plus Query 157 ATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGACCGTGT-CTCAGTTCCAAT-GTGGGGG 214 ||||| |||||||||||||||||||||| ||| |||||| |||||| ||| | |||| | Sbjct 3 ATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTACTCAGTCCCAGTAGTGGCTG 62 Query 215 ACCTTCCTCTCAGA 228 | | ||||||| || Sbjct 63 ATCATCCTCTCGGA 76 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1060718536000