Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vitis_20aestivalis_20[genbank_20GCA_5F001562795.1_202016-02-17] 756,125 sequences; 432,755,284 total letters Query= AAMG01002236.1 Length=287 Score E Sequences producing significant alignments: (Bits) Value seq46823 82.4 1e-13 seq176050 77.0 5e-12 >seq46823 Length=515 Score = 82.4 bits (90), Expect = 1e-13 Identities = 76/95 (80%), Gaps = 1/95 (1%) Strand=Plus/Minus Query 29 AATTGGTTTTTGCGGCTGTCTGACCAGGCAGTGCCGCGAAGCTACCATCTGCTGGATTAT 88 ||||||| | ||| || ||| || ||||| |||||||||||||| | |||||||| Sbjct 512 AATTGGTCATCGCGCTTGGTTGAAAAGCCAGTGGCGCGAAGCTACCATGCGTTGGATTAT 453 Query 89 GGCTGAACGCCTCTAAGTCAGAATCCATGCCAGAA 123 | |||||||||||| ||| |||||||| || |||| Sbjct 452 GACTGAACGCCTCT-AGTTAGAATCCAGGCTAGAA 419 >seq176050 Length=460 Score = 77.0 bits (84), Expect = 5e-12 Identities = 86/114 (75%), Gaps = 2/114 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||| ||||||||| | || || | ||||||||| | ||| || || || |||| Sbjct 231 GTATGAGAGGAACTGTTGATTT--GCATAATTGGTCATCGCGCTTGGTGGAAAAGCCAGT 288 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 | |||||||||||| | |||||||||| ||||| | |||||||| ||||||| Sbjct 289 GGCGCGAAGCTACCGTGCACTGGATTATGACTGAATGTCTCTAAGTTAGAATCC 342 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 813199392000