Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Vitis_20cinerea_20x_20Vitis_20riparia_20[genbank_20GCA_5F001282645.1
_202015-09-10] 210,444 sequences; 539,624,286 total letters
Query= AAMG01000278.1
Length=318
Score E
Sequences producing significant alignments: (Bits) Value
seq138888 125 1e-26
seq35181 89.7 9e-16
>seq138888
Length=555
Score = 125 bits (138), Expect = 1e-26
Identities = 102/121 (84%), Gaps = 2/121 (2%)
Strand=Plus/Plus
Query 198 GATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGAC 257
|| ||||||||| | ||||| || |||||||||||||||||||||||||| |||||
Sbjct 191 GACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATTTATGAAAGAC 250
Query 258 TAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTTAGGG 317
||| ||||||||||| || |||||||||||||||||||||| |||||||| || |||
Sbjct 251 GAACAACTGCGAAAGCATTTGCCAAGGATGTTTTCATTAATCA-AGAACGAAA-TTGGGG 308
Query 318 G 318
|
Sbjct 309 G 309
>seq35181
Length=1261
Score = 89.7 bits (98), Expect = 9e-16
Identities = 120/162 (74%), Gaps = 5/162 (3%)
Strand=Plus/Minus
Query 142 ATAGGACGTGCGGTTCTATTTTGTTGG-TTTCTAGGACCGCCGTAATGATTAATAGGGAT 200
|||||| | |||| |||| ||||| |||| || | | |||||||||||||||||
Sbjct 164 ATAGGATTT-CGGTCTTATTGTGTTGCCTTTCGAGATCAGA-GTAATGATTAATAGGGAC 107
Query 201 AGTCGGGGGTG--TCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACT 258
||| ||||| | ||||| || || ||||| ||||||||| ||| || ||||
Sbjct 106 AGTTGGGGGCACATTCGTATTTCATAGTTAGAGGAAAAATTCTTGAATTCATGAAAGATA 47
Query 259 AACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCA 300
||| ||||| ||| | || ||||||||||||||||||||
Sbjct 46 AACAACTGCAAAATCATTTGTTAAGGATGTTTTCATTAATCA 5
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 913274016512
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |