Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vitis_20cinerea_20x_20Vitis_20riparia_20[genbank_20GCA_5F001282645.1 _202015-09-10] 210,444 sequences; 539,624,286 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq138888 125 1e-26 seq35181 89.7 9e-16 >seq138888 Length=555 Score = 125 bits (138), Expect = 1e-26 Identities = 102/121 (84%), Gaps = 2/121 (2%) Strand=Plus/Plus Query 198 GATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGAC 257 || ||||||||| | ||||| || |||||||||||||||||||||||||| ||||| Sbjct 191 GACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATTTATGAAAGAC 250 Query 258 TAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTTAGGG 317 ||| ||||||||||| || |||||||||||||||||||||| |||||||| || ||| Sbjct 251 GAACAACTGCGAAAGCATTTGCCAAGGATGTTTTCATTAATCA-AGAACGAAA-TTGGGG 308 Query 318 G 318 | Sbjct 309 G 309 >seq35181 Length=1261 Score = 89.7 bits (98), Expect = 9e-16 Identities = 120/162 (74%), Gaps = 5/162 (3%) Strand=Plus/Minus Query 142 ATAGGACGTGCGGTTCTATTTTGTTGG-TTTCTAGGACCGCCGTAATGATTAATAGGGAT 200 |||||| | |||| |||| ||||| |||| || | | ||||||||||||||||| Sbjct 164 ATAGGATTT-CGGTCTTATTGTGTTGCCTTTCGAGATCAGA-GTAATGATTAATAGGGAC 107 Query 201 AGTCGGGGGTG--TCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACT 258 ||| ||||| | ||||| || || ||||| ||||||||| ||| || |||| Sbjct 106 AGTTGGGGGCACATTCGTATTTCATAGTTAGAGGAAAAATTCTTGAATTCATGAAAGATA 47 Query 259 AACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCA 300 ||| ||||| ||| | || |||||||||||||||||||| Sbjct 46 AACAACTGCAAAATCATTTGTTAAGGATGTTTTCATTAATCA 5 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 913274016512