Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vitis_20cinerea_20x_20Vitis_20riparia_20[genbank_20GCA_5F001282645.1 _202015-09-10] 210,444 sequences; 539,624,286 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq206155 235 2e-59 seq66058 132 2e-28 seq145893 104 1e-19 seq106136 100 1e-18 >seq206155 Length=6340 Score = 235 bits (260), Expect = 2e-59 Identities = 225/283 (80%), Gaps = 5/283 (2%) Strand=Plus/Minus Query 405 CGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGT--GTC 462 |||||||||||| ||||||||||||||||||| |||| | ||||||| ||| || Sbjct 5619 CGGCCCGTCTTGAAACACGGACCAAGGAGTCTGACATGTGTGCGAGTCAACGGGCCAGT- 5561 Query 463 AAACCCGTGCG-CGTAATGAAAGTGAACGGAGGTGGGAACCCGTGAGGG-TGCACCATCG 520 |||||||| | || || ||| ||| ||| || ||| ||||| |||||| ||| Sbjct 5560 AAACCCGTAAGGCGCAAGGAAGCTGACCGGCGGGATCCCCCCTCGAGGGGTGCACCGTCG 5501 Query 521 ACCGATCCTGATGTCTTCGGATGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGA 580 ||||| | ||| | | || || || |||| ||||||| |||| ||||||||||||| Sbjct 5500 ACCGACCTCGATCTTATGAGAAGGGTTCGAGTGAGAGCATGCCTGTCGGGACCCGAAAGA 5441 Query 581 TGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGG 640 ||||||||||||||||| ||| ||||||||||||||||||||||||||| ||||||| Sbjct 5440 TGGTGAACTATGCCTGAGCGGGGCGAAGCCAGAGGAAACTCTGGTGGAGGCCCGCAGCGA 5381 Query 641 TTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 | ||| ||||||||||| ||||| | |||||||||||||||| Sbjct 5380 TACTGACGTGCAAATCGTTCGTCTGACTTGGGTATAGGGGCGA 5338 Score = 158 bits (174), Expect = 5e-36 Identities = 134/165 (81%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 35 TCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGC 94 ||| ||||||| |||||||||||||||||| | || ||| |||||||| | || || || Sbjct 6009 TCGGCGAGTCGGGTTGTTTGGGAATGCAGCCCCAATCGGGCGGTAAATTCCGTCCAAGGC 5950 Query 95 TAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTT 154 |||||| ||| ||||||||||||| ||||||| | || ||||||||||||| |||| Sbjct 5949 TAAATACGGGCGAGAGACCGATAGCAAACAAGTACCGCGAGGGAAAGATGAAAAGGACTT 5890 Query 155 TGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199 || ||||||||| ||| || | ||||||||| | ||||||||| Sbjct 5889 TGAAAAGAGAGTCAAAGAGTGCTTGAAATTGTCGGGAGGGAAGCG 5845 >seq66058 Length=6712 Score = 132 bits (146), Expect = 2e-28 Identities = 102/121 (84%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 563 CTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCT 622 ||||||||||| ||||||||||||||||||||||| | ||| |||||| | |||||||| Sbjct 1731 CTGTTGGGACCTGAAAGATGGTGAACTATGCCTGAGTGGGGCAAAGCCAAATGAAACTCT 1672 Query 623 GGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCG 682 ||||||||| | ||||| | || | |||||||| ||||| | ||||||||||||||| Sbjct 1671 GGTGGAGGCCCACAGCGATACTAACATGCAAATCACTCGTCTGACTTGGGTATAGGGGCG 1612 Query 683 A 683 | Sbjct 1611 A 1611 >seq145893 Length=6691 Score = 104 bits (114), Expect = 1e-19 Identities = 179/255 (70%), Gaps = 10/255 (4%) Strand=Plus/Plus Query 405 CGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGT--GTC 462 ||||| | ||| ||||| ||||||||||||| | || | ||||||| | || || Sbjct 6043 CGGCCTATTTTGAAACACAGACCAAGGAGTCTGATATGTGTGCGAGTCAATAGGCCAGTA 6102 Query 463 AAA-CCCGTGCG-CGTAATGAAAGTGAACGGAGGTGGGAACCCGTGAGGGTGCACCATCG 520 ||| ||||| | | || ||| ||| ||| | || || || ||||||||| Sbjct 6103 AAAACCCGTAAGGCACAAGGAAGCTGATCGGCAG---GATCCTC---GGTTGCACCATCA 6156 Query 521 ACCGATCCTGATGTCTTCGGATGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGA 580 ||| | | | || | | || | || |||| ||||||| || | | ||| ||||| Sbjct 6157 ACCAACCTTAATCTTATAAGACAGGTTCGAGTGAGAGCATGTCTATCAGAACCTAAAAGA 6216 Query 581 TGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGG 640 | ||||| ||||||||| |||| ||||| ||||||||||| | |||||||| |||||| Sbjct 6217 TAGTGAAGTATGCCTGAGCAGGGCGAAGCTAGAGGAAACTCCGATGGAGGCTTGCAGCGA 6276 Query 641 TTCTGGCGTGCAAAT 655 | || | ||||||| Sbjct 6277 TACTAACATGCAAAT 6291 Score = 89.7 bits (98), Expect = 2e-15 Identities = 115/159 (72%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 39 CGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAA 98 ||||| |||||||||||||| ||| |||| ||| ||||||| || || || ||| Sbjct 5662 CGAGTTAGGTTGTTTGGGAATGTAGCCCTAATCGGGCAGTAAATTCAATCCAAGGCGAAA 5721 Query 99 TATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGA 158 ||| || |||||| ||||| ||||||| |||| ||| |||||| | | |||| | Sbjct 5722 TATGGGTAAGAGACTAATAGCAAACAAGTATCGTGAGGAAAAAATGAAAGGGATTTTGAA 5781 Query 159 AAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAG 197 || | ||| ||| || ||||||||| | || | ||| Sbjct 5782 AAAAAAGTCAAAGAGTGTTTGAAATTGTCGGAAAGAAAG 5820 >seq106136 Length=3212 Score = 100 bits (110), Expect = 1e-18 Identities = 120/163 (74%), Gaps = 0/163 (0%) Strand=Plus/Plus Query 35 TCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGC 94 ||| |||||| |||||||||||||| ||| |||| ||| ||||||| || || || Sbjct 2179 TCGGCGAGTCAGGTTGTTTGGGAATGTAGCCCTAATCGGGCAGTAAATTCAATCCAAGGC 2238 Query 95 TAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTT 154 |||||| || |||||| ||||| ||||||| |||| ||| |||||||| | || Sbjct 2239 GAAATATGGGTAAGAGACTAATAGCAAACAAGTATCGTGAGGAAAAAATGAAAAGGATTT 2298 Query 155 TGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAG 197 || ||| | ||| ||| || ||||||||| | || | ||| Sbjct 2299 TGAAAAAAAAGTCAAAGAGTGTTTGAAATTGTCGGAAAGAAAG 2341 Score = 95.1 bits (104), Expect = 5e-17 Identities = 176/255 (69%), Gaps = 10/255 (4%) Strand=Plus/Plus Query 405 CGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTGTC-- 462 ||||| || ||| ||||| |||||||||||| | || | ||||||| | || Sbjct 2564 CGGCCTGTTTTGAAACACAAACCAAGGAGTCTGATATGTGTGCGAGTCAATAGGCCAATA 2623 Query 463 -AAACCCGTGCG-CGTAATGAAAGTGAACGGAGGTGGGAACCCGTGAGGGTGCACCATCG 520 |||||||| | | || ||| ||| ||| | || || |||||||||||| Sbjct 2624 AAAACCCGTAAGGCACAAGGAAGCTGATCGGCAG---GATCCTC---GGGTGCACCATCA 2677 Query 521 ACCGATCCTGATGTCTTCGGATGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGA 580 ||| | | | || | | || | || ||| ||||||| || | | ||| ||||| Sbjct 2678 ACCAACCTTAATCTTATAAGACAGGTTCAAGTGAGAGCATGTCTATCAGAACCTAAAAGA 2737 Query 581 TGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGG 640 | ||||| ||||||||| |||| ||||| ||||||||||| | |||||||| ||||| Sbjct 2738 TAGTGAAGTATGCCTGAGCAGGGCGAAGCTAGAGGAAACTCCGATGGAGGCTTGCAGCAA 2797 Query 641 TTCTGGCGTGCAAAT 655 | || | ||||||| Sbjct 2798 TACTAACATGCAAAT 2812 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2075485976200