Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Vitis_20cinerea_20x_20Vitis_20riparia_20[genbank_20GCA_5F001282645.1
_202015-09-10] 210,444 sequences; 539,624,286 total letters
Query= AAMG01000304.1
Length=683
Score E
Sequences producing significant alignments: (Bits) Value
seq206155 235 2e-59
seq66058 132 2e-28
seq145893 104 1e-19
seq106136 100 1e-18
>seq206155
Length=6340
Score = 235 bits (260), Expect = 2e-59
Identities = 225/283 (80%), Gaps = 5/283 (2%)
Strand=Plus/Minus
Query 405 CGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGT--GTC 462
|||||||||||| ||||||||||||||||||| |||| | ||||||| ||| ||
Sbjct 5619 CGGCCCGTCTTGAAACACGGACCAAGGAGTCTGACATGTGTGCGAGTCAACGGGCCAGT- 5561
Query 463 AAACCCGTGCG-CGTAATGAAAGTGAACGGAGGTGGGAACCCGTGAGGG-TGCACCATCG 520
|||||||| | || || ||| ||| ||| || ||| ||||| |||||| |||
Sbjct 5560 AAACCCGTAAGGCGCAAGGAAGCTGACCGGCGGGATCCCCCCTCGAGGGGTGCACCGTCG 5501
Query 521 ACCGATCCTGATGTCTTCGGATGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGA 580
||||| | ||| | | || || || |||| ||||||| |||| |||||||||||||
Sbjct 5500 ACCGACCTCGATCTTATGAGAAGGGTTCGAGTGAGAGCATGCCTGTCGGGACCCGAAAGA 5441
Query 581 TGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGG 640
||||||||||||||||| ||| ||||||||||||||||||||||||||| |||||||
Sbjct 5440 TGGTGAACTATGCCTGAGCGGGGCGAAGCCAGAGGAAACTCTGGTGGAGGCCCGCAGCGA 5381
Query 641 TTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683
| ||| ||||||||||| ||||| | ||||||||||||||||
Sbjct 5380 TACTGACGTGCAAATCGTTCGTCTGACTTGGGTATAGGGGCGA 5338
Score = 158 bits (174), Expect = 5e-36
Identities = 134/165 (81%), Gaps = 0/165 (0%)
Strand=Plus/Minus
Query 35 TCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGC 94
||| ||||||| |||||||||||||||||| | || ||| |||||||| | || || ||
Sbjct 6009 TCGGCGAGTCGGGTTGTTTGGGAATGCAGCCCCAATCGGGCGGTAAATTCCGTCCAAGGC 5950
Query 95 TAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTT 154
|||||| ||| ||||||||||||| ||||||| | || ||||||||||||| ||||
Sbjct 5949 TAAATACGGGCGAGAGACCGATAGCAAACAAGTACCGCGAGGGAAAGATGAAAAGGACTT 5890
Query 155 TGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199
|| ||||||||| ||| || | ||||||||| | |||||||||
Sbjct 5889 TGAAAAGAGAGTCAAAGAGTGCTTGAAATTGTCGGGAGGGAAGCG 5845
>seq66058
Length=6712
Score = 132 bits (146), Expect = 2e-28
Identities = 102/121 (84%), Gaps = 0/121 (0%)
Strand=Plus/Minus
Query 563 CTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCT 622
||||||||||| ||||||||||||||||||||||| | ||| |||||| | ||||||||
Sbjct 1731 CTGTTGGGACCTGAAAGATGGTGAACTATGCCTGAGTGGGGCAAAGCCAAATGAAACTCT 1672
Query 623 GGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCG 682
||||||||| | ||||| | || | |||||||| ||||| | |||||||||||||||
Sbjct 1671 GGTGGAGGCCCACAGCGATACTAACATGCAAATCACTCGTCTGACTTGGGTATAGGGGCG 1612
Query 683 A 683
|
Sbjct 1611 A 1611
>seq145893
Length=6691
Score = 104 bits (114), Expect = 1e-19
Identities = 179/255 (70%), Gaps = 10/255 (4%)
Strand=Plus/Plus
Query 405 CGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGT--GTC 462
||||| | ||| ||||| ||||||||||||| | || | ||||||| | || ||
Sbjct 6043 CGGCCTATTTTGAAACACAGACCAAGGAGTCTGATATGTGTGCGAGTCAATAGGCCAGTA 6102
Query 463 AAA-CCCGTGCG-CGTAATGAAAGTGAACGGAGGTGGGAACCCGTGAGGGTGCACCATCG 520
||| ||||| | | || ||| ||| ||| | || || || |||||||||
Sbjct 6103 AAAACCCGTAAGGCACAAGGAAGCTGATCGGCAG---GATCCTC---GGTTGCACCATCA 6156
Query 521 ACCGATCCTGATGTCTTCGGATGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGA 580
||| | | | || | | || | || |||| ||||||| || | | ||| |||||
Sbjct 6157 ACCAACCTTAATCTTATAAGACAGGTTCGAGTGAGAGCATGTCTATCAGAACCTAAAAGA 6216
Query 581 TGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGG 640
| ||||| ||||||||| |||| ||||| ||||||||||| | |||||||| ||||||
Sbjct 6217 TAGTGAAGTATGCCTGAGCAGGGCGAAGCTAGAGGAAACTCCGATGGAGGCTTGCAGCGA 6276
Query 641 TTCTGGCGTGCAAAT 655
| || | |||||||
Sbjct 6277 TACTAACATGCAAAT 6291
Score = 89.7 bits (98), Expect = 2e-15
Identities = 115/159 (72%), Gaps = 0/159 (0%)
Strand=Plus/Plus
Query 39 CGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAA 98
||||| |||||||||||||| ||| |||| ||| ||||||| || || || |||
Sbjct 5662 CGAGTTAGGTTGTTTGGGAATGTAGCCCTAATCGGGCAGTAAATTCAATCCAAGGCGAAA 5721
Query 99 TATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGA 158
||| || |||||| ||||| ||||||| |||| ||| |||||| | | |||| |
Sbjct 5722 TATGGGTAAGAGACTAATAGCAAACAAGTATCGTGAGGAAAAAATGAAAGGGATTTTGAA 5781
Query 159 AAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAG 197
|| | ||| ||| || ||||||||| | || | |||
Sbjct 5782 AAAAAAGTCAAAGAGTGTTTGAAATTGTCGGAAAGAAAG 5820
>seq106136
Length=3212
Score = 100 bits (110), Expect = 1e-18
Identities = 120/163 (74%), Gaps = 0/163 (0%)
Strand=Plus/Plus
Query 35 TCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGC 94
||| |||||| |||||||||||||| ||| |||| ||| ||||||| || || ||
Sbjct 2179 TCGGCGAGTCAGGTTGTTTGGGAATGTAGCCCTAATCGGGCAGTAAATTCAATCCAAGGC 2238
Query 95 TAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTT 154
|||||| || |||||| ||||| ||||||| |||| ||| |||||||| | ||
Sbjct 2239 GAAATATGGGTAAGAGACTAATAGCAAACAAGTATCGTGAGGAAAAAATGAAAAGGATTT 2298
Query 155 TGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAG 197
|| ||| | ||| ||| || ||||||||| | || | |||
Sbjct 2299 TGAAAAAAAAGTCAAAGAGTGTTTGAAATTGTCGGAAAGAAAG 2341
Score = 95.1 bits (104), Expect = 5e-17
Identities = 176/255 (69%), Gaps = 10/255 (4%)
Strand=Plus/Plus
Query 405 CGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTGTC-- 462
||||| || ||| ||||| |||||||||||| | || | ||||||| | ||
Sbjct 2564 CGGCCTGTTTTGAAACACAAACCAAGGAGTCTGATATGTGTGCGAGTCAATAGGCCAATA 2623
Query 463 -AAACCCGTGCG-CGTAATGAAAGTGAACGGAGGTGGGAACCCGTGAGGGTGCACCATCG 520
|||||||| | | || ||| ||| ||| | || || ||||||||||||
Sbjct 2624 AAAACCCGTAAGGCACAAGGAAGCTGATCGGCAG---GATCCTC---GGGTGCACCATCA 2677
Query 521 ACCGATCCTGATGTCTTCGGATGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGA 580
||| | | | || | | || | || ||| ||||||| || | | ||| |||||
Sbjct 2678 ACCAACCTTAATCTTATAAGACAGGTTCAAGTGAGAGCATGTCTATCAGAACCTAAAAGA 2737
Query 581 TGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGG 640
| ||||| ||||||||| |||| ||||| ||||||||||| | |||||||| |||||
Sbjct 2738 TAGTGAAGTATGCCTGAGCAGGGCGAAGCTAGAGGAAACTCCGATGGAGGCTTGCAGCAA 2797
Query 641 TTCTGGCGTGCAAAT 655
| || | |||||||
Sbjct 2798 TACTAACATGCAAAT 2812
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 2075485976200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |