Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vitis_20cinerea_20x_20Vitis_20riparia_20[genbank_20GCA_5F001282645.1 _202015-09-10] 210,444 sequences; 539,624,286 total letters Query= AAMG01000538.1 Length=248 Score E Sequences producing significant alignments: (Bits) Value seq74092 152 7e-35 seq153649 140 4e-31 seq106173 87.8 2e-15 seq43684 84.2 3e-14 seq37867 77.0 4e-12 >seq74092 Length=2799 Score = 152 bits (168), Expect = 7e-35 Identities = 181/243 (74%), Gaps = 12/243 (5%) Strand=Plus/Minus Query 6 CCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACC 65 ||||||| ||||||||||| ||||| | ||||||||| ||||| ||| ||| | || Sbjct 2772 CCTTCCAGCACCGGGCAGGTGTCAGACTCTATACATCGTGTTACCA-CTTAGCAGAGTCC 2714 Query 66 TGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACG 125 |||||||||| |||||||||||| ||| || | | ||| | | | |||| | Sbjct 2713 TGTGTTTTTAATAAACAGTCGCTACCCCCTGGTATGTGCCGCTTTCCTAA--TCAAAAGA 2656 Query 126 TCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCT 185 | || || | ||||||||||||||||||||||||| ||||||||||| ||||| Sbjct 2655 T--------AGGAGAG-CACCCCTTCTCCCGAAGTTACGGGGTCATTTTGCCGAGTTCCT 2605 Query 186 TAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACG 245 | || |||| | | | |||| |||||| |||||| || ||||||||||||||| | Sbjct 2604 TCGACATGGTTCTCTCAAGCGCCCTAGTATACTCTACTTGTTCACCTGTGTCGGTTTGGG 2545 Query 246 GTA 248 ||| Sbjct 2544 GTA 2542 >seq153649 Length=14578 Score = 140 bits (154), Expect = 4e-31 Identities = 171/231 (74%), Gaps = 12/231 (5%) Strand=Plus/Plus Query 6 CCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACC 65 ||||||| ||||||||||| ||||| | ||||||||| ||||| ||| ||| | || Sbjct 14360 CCTTCCAGCACCGGGCAGGTGTCAGACTCTATACATCGTGTTACCA-CTTAGCAGAGTCC 14418 Query 66 TGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACG 125 |||||||||| |||||||||||| ||| || | | ||| | | | |||| | Sbjct 14419 TGTGTTTTTAATAAACAGTCGCTACCCCCTGGTATGTGCCGCTTTCCTAA--TCAAAAGA 14476 Query 126 TCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCT 185 | || || | ||||||||||||||||||||||||| ||||||||||| ||||| Sbjct 14477 T--------AGGAGAG-CACCCCTTCTCCCGAAGTTACGGGGTCATTTTGCCGAGTTCCT 14527 Query 186 TAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGT 236 || | |||| | || | ||| ||||||||||||| |||||||||| Sbjct 14528 TAGAGAGAGTTGTCTCGCGCCCCTAGGTATTCTCTACCTACCCACCTGTGT 14578 >seq106173 Length=7727 Score = 87.8 bits (96), Expect = 2e-15 Identities = 86/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 138 AGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTC 197 || ||||||||||||| ||||||||| |||| |||||||||| ||||||| | |||| Sbjct 2517 AGAGGCACCCCTTCTCTCGAAGTTACAGGGCTATTTTGCCGACTTCCTTAGGGAGAGTTG 2576 Query 198 ACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACGGTA 248 | | | | ||||||||||||| ||| |||||||||||| |||| Sbjct 2577 TCTTGTGCCTCCAGGTATTCTCTACCTACCCAGCTGTGTCGGTTTCAGGTA 2627 >seq43684 Length=4082 Score = 84.2 bits (92), Expect = 3e-14 Identities = 85/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 138 AGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTC 197 || ||||||||||||| ||||||||| |||| |||||||||| ||||||| | |||| Sbjct 3434 AGAGGCACCCCTTCTCTCGAAGTTACAGGGCTATTTTGCCGACTTCCTTAGGGAGAGTTG 3493 Query 198 ACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACGGTA 248 | | | | ||||||||||||| ||| |||||| ||||| |||| Sbjct 3494 TCTTGTGCCTCCAGGTATTCTCTACCTACCCAGCTGTGTTGGTTTCAGGTA 3544 >seq37867 Length=3445 Score = 77.0 bits (84), Expect = 4e-12 Identities = 75/97 (77%), Gaps = 0/97 (0%) Strand=Plus/Plus Query 146 CCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTCACCCGAAC 205 ||||||||| ||||||||||| | |||||| | | ||| ||| | |||| | | || Sbjct 1608 CCCTTCTCCAGAAGTTACGGGACTATTTTGTCAAGTTCTTTAGAGAGAGTTGTCTCACAC 1667 Query 206 GCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTT 242 ||| ||||||||||||| |||||| ||||||||| Sbjct 1668 CCCTAAGTATTCTCTACCCACCCACCTATGTCGGTTT 1704 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 692984343212