Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Vitis_20cinerea_20x_20Vitis_20riparia_20[genbank_20GCA_5F001282645.1
_202015-09-10] 210,444 sequences; 539,624,286 total letters
Query= AAMG01000538.1
Length=248
Score E
Sequences producing significant alignments: (Bits) Value
seq74092 152 7e-35
seq153649 140 4e-31
seq106173 87.8 2e-15
seq43684 84.2 3e-14
seq37867 77.0 4e-12
>seq74092
Length=2799
Score = 152 bits (168), Expect = 7e-35
Identities = 181/243 (74%), Gaps = 12/243 (5%)
Strand=Plus/Minus
Query 6 CCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACC 65
||||||| ||||||||||| ||||| | ||||||||| ||||| ||| ||| | ||
Sbjct 2772 CCTTCCAGCACCGGGCAGGTGTCAGACTCTATACATCGTGTTACCA-CTTAGCAGAGTCC 2714
Query 66 TGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACG 125
|||||||||| |||||||||||| ||| || | | ||| | | | |||| |
Sbjct 2713 TGTGTTTTTAATAAACAGTCGCTACCCCCTGGTATGTGCCGCTTTCCTAA--TCAAAAGA 2656
Query 126 TCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCT 185
| || || | ||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 2655 T--------AGGAGAG-CACCCCTTCTCCCGAAGTTACGGGGTCATTTTGCCGAGTTCCT 2605
Query 186 TAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACG 245
| || |||| | | | |||| |||||| |||||| || ||||||||||||||| |
Sbjct 2604 TCGACATGGTTCTCTCAAGCGCCCTAGTATACTCTACTTGTTCACCTGTGTCGGTTTGGG 2545
Query 246 GTA 248
|||
Sbjct 2544 GTA 2542
>seq153649
Length=14578
Score = 140 bits (154), Expect = 4e-31
Identities = 171/231 (74%), Gaps = 12/231 (5%)
Strand=Plus/Plus
Query 6 CCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACC 65
||||||| ||||||||||| ||||| | ||||||||| ||||| ||| ||| | ||
Sbjct 14360 CCTTCCAGCACCGGGCAGGTGTCAGACTCTATACATCGTGTTACCA-CTTAGCAGAGTCC 14418
Query 66 TGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACG 125
|||||||||| |||||||||||| ||| || | | ||| | | | |||| |
Sbjct 14419 TGTGTTTTTAATAAACAGTCGCTACCCCCTGGTATGTGCCGCTTTCCTAA--TCAAAAGA 14476
Query 126 TCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCT 185
| || || | ||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 14477 T--------AGGAGAG-CACCCCTTCTCCCGAAGTTACGGGGTCATTTTGCCGAGTTCCT 14527
Query 186 TAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGT 236
|| | |||| | || | ||| ||||||||||||| ||||||||||
Sbjct 14528 TAGAGAGAGTTGTCTCGCGCCCCTAGGTATTCTCTACCTACCCACCTGTGT 14578
>seq106173
Length=7727
Score = 87.8 bits (96), Expect = 2e-15
Identities = 86/111 (77%), Gaps = 0/111 (0%)
Strand=Plus/Plus
Query 138 AGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTC 197
|| ||||||||||||| ||||||||| |||| |||||||||| ||||||| | ||||
Sbjct 2517 AGAGGCACCCCTTCTCTCGAAGTTACAGGGCTATTTTGCCGACTTCCTTAGGGAGAGTTG 2576
Query 198 ACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACGGTA 248
| | | | ||||||||||||| ||| |||||||||||| ||||
Sbjct 2577 TCTTGTGCCTCCAGGTATTCTCTACCTACCCAGCTGTGTCGGTTTCAGGTA 2627
>seq43684
Length=4082
Score = 84.2 bits (92), Expect = 3e-14
Identities = 85/111 (77%), Gaps = 0/111 (0%)
Strand=Plus/Plus
Query 138 AGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTC 197
|| ||||||||||||| ||||||||| |||| |||||||||| ||||||| | ||||
Sbjct 3434 AGAGGCACCCCTTCTCTCGAAGTTACAGGGCTATTTTGCCGACTTCCTTAGGGAGAGTTG 3493
Query 198 ACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACGGTA 248
| | | | ||||||||||||| ||| |||||| ||||| ||||
Sbjct 3494 TCTTGTGCCTCCAGGTATTCTCTACCTACCCAGCTGTGTTGGTTTCAGGTA 3544
>seq37867
Length=3445
Score = 77.0 bits (84), Expect = 4e-12
Identities = 75/97 (77%), Gaps = 0/97 (0%)
Strand=Plus/Plus
Query 146 CCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTCACCCGAAC 205
||||||||| ||||||||||| | |||||| | | ||| ||| | |||| | | ||
Sbjct 1608 CCCTTCTCCAGAAGTTACGGGACTATTTTGTCAAGTTCTTTAGAGAGAGTTGTCTCACAC 1667
Query 206 GCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTT 242
||| ||||||||||||| |||||| |||||||||
Sbjct 1668 CCCTAAGTATTCTCTACCCACCCACCTATGTCGGTTT 1704
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 692984343212
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |